Wall clock time and date at job start Tue Mar 31 2020 19:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42910 * 114.00019 * 2 1 4 4 C 1.52996 * 109.46980 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47593 * 65.00046 * 4 3 2 6 6 C 1.35904 * 117.00240 * 180.02562 * 5 4 3 7 7 C 1.38855 * 119.98333 * 359.97438 * 6 5 4 8 8 C 1.38247 * 120.23643 * 180.02562 * 7 6 5 9 9 C 1.38011 * 120.20666 * 0.02562 * 8 7 6 10 10 C 1.39557 * 119.96829 * 359.97438 * 9 8 7 11 11 C 1.47857 * 120.12284 * 179.97438 * 10 9 8 12 12 O 1.21547 * 120.00225 * 207.05532 * 11 10 9 13 13 N 1.34781 * 119.99592 * 27.05426 * 11 10 9 14 14 C 1.47433 * 125.64760 * 355.95147 * 13 11 10 15 15 C 1.54904 * 104.82811 * 155.91342 * 14 13 11 16 16 C 1.55159 * 101.58563 * 37.01245 * 15 14 13 17 17 O 1.42894 * 110.72312 * 83.03531 * 16 15 14 18 18 C 1.50701 * 110.72291 * 206.13591 * 16 15 14 19 19 H 1.08008 * 119.99652 * 357.13279 * 18 16 15 20 20 C 1.37877 * 120.00116 * 176.86212 * 18 16 15 21 21 N 1.31505 * 120.00050 * 354.43776 * 20 18 16 22 22 Si 1.86796 * 119.99838 * 174.44417 * 20 18 16 23 23 H 1.48504 * 109.47398 * 94.99043 * 22 20 18 24 24 H 1.48506 * 109.47017 * 214.99283 * 22 20 18 25 25 H 1.48504 * 109.47389 * 334.98889 * 22 20 18 26 26 C 1.47320 * 125.61596 * 176.18716 * 13 11 10 27 27 C 1.38455 * 119.98656 * 180.27971 * 6 5 4 28 28 H 1.09000 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47080 * 300.00157 * 1 2 3 30 30 H 1.09001 * 109.47248 * 60.00160 * 1 2 3 31 31 H 1.08994 * 109.46447 * 59.99617 * 3 2 1 32 32 H 1.09001 * 109.46715 * 299.99991 * 3 2 1 33 33 H 1.08997 * 109.47114 * 304.99569 * 4 3 2 34 34 H 1.09001 * 109.46654 * 185.00024 * 4 3 2 35 35 H 1.07995 * 119.88293 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.89725 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.01493 * 179.97438 * 9 8 7 38 38 H 1.09000 * 110.36436 * 37.07618 * 14 13 11 39 39 H 1.09001 * 110.36369 * 274.74942 * 14 13 11 40 40 H 1.08999 * 111.00790 * 278.93170 * 15 14 13 41 41 H 1.09007 * 111.03451 * 155.09671 * 15 14 13 42 42 H 0.96699 * 114.00091 * 182.44348 * 17 16 15 43 43 H 0.96995 * 120.00431 * 180.02562 * 21 20 18 44 44 H 1.08995 * 110.06383 * 61.67170 * 26 13 11 45 45 H 1.09007 * 109.84324 * 300.40994 * 26 13 11 46 46 H 1.08004 * 120.10138 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3020 0.3978 -1.3836 7 6 6.1820 0.7949 -0.3856 8 6 7.5432 0.6129 -0.5449 9 6 8.0364 0.0356 -1.6973 10 6 7.1597 -0.3667 -2.7058 11 6 7.6844 -0.9850 -3.9422 12 8 7.0601 -0.8914 -4.9808 13 7 8.8551 -1.6524 -3.9173 14 6 9.7521 -1.7709 -2.7533 15 6 10.5651 -3.0644 -3.0093 16 6 10.7700 -3.0046 -4.5462 17 8 11.8830 -2.1713 -4.8758 18 6 10.9558 -4.3883 -5.1136 19 1 10.9803 -5.2434 -4.4543 20 6 11.0890 -4.5630 -6.4747 21 7 10.9448 -3.5385 -7.2865 22 14 11.4740 -6.2552 -7.1658 23 1 10.2103 -6.9280 -7.5606 24 1 12.3531 -6.1161 -8.3546 25 1 12.1647 -7.0669 -6.1317 26 6 9.4520 -2.3801 -5.0507 27 6 5.7865 -0.1775 -2.5460 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.8018 1.2476 0.5181 36 1 8.2227 0.9234 0.2351 37 1 9.1003 -0.1048 -1.8186 38 1 9.1719 -1.8630 -1.8352 39 1 10.4175 -0.9093 -2.6979 40 1 9.9933 -3.9479 -2.7254 41 1 11.5211 -3.0356 -2.4863 42 1 12.0310 -2.0704 -5.8261 43 1 11.0381 -3.6614 -8.2440 44 1 9.6579 -1.6917 -5.8703 45 1 8.7737 -3.1653 -5.3848 46 1 5.1034 -0.4827 -3.3249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842615.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:55 Heat of formation + Delta-G solvation = -149.007348 kcal Electronic energy + Delta-G solvation = -28641.245851 eV Core-core repulsion = 24496.037922 eV Total energy + Delta-G solvation = -4145.207929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67616 -40.74142 -39.19879 -38.76285 -37.89366 -36.18319 -34.24553 -32.48724 -32.37581 -31.46244 -30.55810 -29.39155 -27.35487 -27.18766 -25.49001 -24.22401 -23.53540 -22.74809 -21.48625 -20.85215 -19.28413 -19.07002 -17.83740 -17.76989 -17.45403 -17.26449 -16.86786 -16.64858 -16.48158 -16.28373 -16.16421 -15.99817 -15.54194 -14.91370 -14.80510 -14.70542 -14.67174 -14.23088 -13.87560 -13.67012 -13.57249 -13.43306 -13.15369 -12.96516 -12.84158 -12.77166 -12.37533 -12.35619 -12.31317 -12.19678 -12.12303 -11.89543 -11.79322 -11.14017 -11.07605 -10.69319 -10.67137 -10.29295 -10.11550 -9.62171 -9.26199 -8.27558 -6.43553 -0.18228 0.38451 1.39854 1.42410 1.52856 1.69145 1.89181 2.27638 2.37910 2.76076 2.81342 2.98362 3.43816 3.74298 3.77699 3.93567 3.98960 4.07896 4.13657 4.17242 4.23436 4.29063 4.34450 4.37299 4.44374 4.51303 4.52721 4.55830 4.60657 4.67979 4.72123 4.85696 4.87469 5.00648 5.10177 5.18326 5.20729 5.30497 5.35927 5.37370 5.49607 5.66813 5.72846 6.03364 6.18110 6.41473 6.54366 6.64846 7.04363 7.25415 7.31517 8.78027 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020075 B = 0.002307 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.406500 B =12132.959087 C =12839.170997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.049 3.951 5 O -0.330 6.330 6 C 0.120 3.880 7 C -0.175 4.175 8 C -0.071 4.071 9 C -0.138 4.138 10 C -0.099 4.099 11 C 0.552 3.448 12 O -0.598 6.598 13 N -0.607 5.607 14 C 0.098 3.902 15 C -0.113 4.113 16 C 0.234 3.766 17 O -0.583 6.583 18 C -0.557 4.557 19 H 0.069 0.931 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.963 3.037 23 H -0.282 1.282 24 H -0.280 1.280 25 H -0.263 1.263 26 C 0.122 3.878 27 C -0.125 4.125 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.170 0.830 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.375 0.625 43 H 0.270 0.730 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 11.983 21.839 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.025 4.025 5 O -0.245 6.245 6 C 0.075 3.925 7 C -0.194 4.194 8 C -0.088 4.088 9 C -0.156 4.156 10 C -0.103 4.103 11 C 0.343 3.657 12 O -0.481 6.481 13 N -0.338 5.338 14 C -0.023 4.023 15 C -0.151 4.151 16 C 0.193 3.807 17 O -0.391 6.391 18 C -0.596 4.596 19 H 0.087 0.913 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.208 1.208 24 H -0.206 1.206 25 H -0.187 1.187 26 C -0.001 4.001 27 C -0.145 4.145 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.188 0.812 36 H 0.194 0.806 37 H 0.172 0.828 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.223 0.777 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.391 11.939 21.643 28.112 hybrid contribution -0.279 -0.818 -2.160 2.327 sum -13.671 11.121 19.483 26.270 Atomic orbital electron populations 1.22905 0.79438 1.03622 1.01050 1.87932 1.21571 1.28793 1.95671 1.22796 0.91069 0.85188 1.02870 1.23259 0.94447 0.99601 0.85167 1.86136 1.19531 1.77502 1.41320 1.18786 0.83449 0.96300 0.94004 1.21820 0.93955 1.03900 0.99694 1.21372 0.95174 0.95333 0.96936 1.22015 1.00986 0.99481 0.93164 1.19466 0.93941 1.02648 0.94202 1.18684 0.79795 0.78290 0.88903 1.90710 1.59926 1.62645 1.34776 1.48828 1.19725 1.50116 1.15139 1.22937 0.91996 0.98835 0.88556 1.22801 1.00748 0.97011 0.94532 1.19701 0.80961 0.87765 0.92247 1.86088 1.51664 1.71694 1.29648 1.21849 1.51406 0.93525 0.92777 0.91330 1.25840 0.93512 1.00935 0.97423 1.69861 1.49104 1.32238 1.04253 0.85458 0.77973 0.79641 0.78052 1.20803 1.20581 1.18713 1.22649 0.96617 0.93161 0.87684 1.20287 0.94035 1.02690 0.97520 0.89338 0.92014 0.93647 0.87686 0.92345 0.89963 0.87391 0.81229 0.80586 0.82810 0.87224 0.89483 0.89949 0.88381 0.77663 0.92123 0.94834 0.95005 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.97 10.67 -144.35 -1.54 -9.51 16 3 C 0.06 0.71 6.32 71.98 0.45 1.17 16 4 C 0.05 0.67 5.12 71.98 0.37 1.03 16 5 O -0.33 -8.02 10.10 -87.84 -0.89 -8.91 16 6 C 0.12 3.04 6.68 22.47 0.15 3.19 16 7 C -0.18 -3.00 9.03 22.42 0.20 -2.80 16 8 C -0.07 -1.18 10.03 22.22 0.22 -0.95 16 9 C -0.14 -3.37 7.93 22.53 0.18 -3.19 16 10 C -0.10 -3.38 5.71 -20.10 -0.11 -3.50 16 11 C 0.55 24.46 7.65 86.79 0.66 25.12 16 12 O -0.60 -31.92 16.98 -3.86 -0.07 -31.99 16 13 N -0.61 -26.21 3.33 -814.40 -2.71 -28.92 16 14 C 0.10 3.21 5.01 86.85 0.44 3.65 16 15 C -0.11 -4.27 6.23 31.99 0.20 -4.07 16 16 C 0.23 11.38 0.85 -10.35 -0.01 11.37 16 17 O -0.58 -29.18 13.08 -148.98 -1.95 -31.13 16 18 C -0.56 -29.47 8.11 25.60 0.21 -29.26 16 19 H 0.07 3.52 7.78 -2.91 -0.02 3.49 16 20 C 0.02 1.27 5.25 84.66 0.44 1.71 16 21 N -0.92 -50.81 10.98 21.45 0.24 -50.57 16 22 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 26 C 0.12 6.29 5.24 86.67 0.45 6.75 16 27 C -0.13 -4.17 9.53 22.63 0.22 -3.95 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 34 H 0.11 0.78 7.66 -2.39 -0.02 0.76 16 35 H 0.17 1.49 6.28 -2.91 -0.02 1.47 16 36 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.15 3.40 4.53 -2.91 -0.01 3.39 16 38 H 0.11 2.83 6.12 -2.39 -0.01 2.82 16 39 H 0.09 2.59 7.31 -2.39 -0.02 2.57 16 40 H 0.08 3.02 8.04 -2.39 -0.02 3.00 16 41 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 42 H 0.37 19.68 7.49 -74.06 -0.55 19.13 16 43 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.03 1.92 7.92 -2.39 -0.02 1.90 16 45 H 0.03 1.83 7.81 -2.38 -0.02 1.81 16 46 H 0.11 4.16 7.88 -2.91 -0.02 4.14 16 Total: -1.00 -76.34 377.38 0.88 -75.46 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.45 Total: 33.09 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 5.32 Total: 7.83 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.48 Total: -79.50 kcal Atomic # 8 Polarization: -77.10 SS G_CDS: -4.44 Total: -81.54 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -76.34 0.88 -75.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842615.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.546 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds