Wall clock time and date at job start Tue Mar 31 2020 18:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35988 * 117.00171 * 2 1 4 4 C 1.38562 * 120.07446 * 0.02929 * 3 2 1 5 5 C 1.38247 * 120.00483 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14211 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92538 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47642 * 89.99297 * 7 6 5 9 9 O 1.21288 * 119.99703 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00632 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64436 * 359.69684 * 10 8 7 12 12 C 1.55132 * 104.72532 * 155.81263 * 11 10 8 13 13 C 1.55163 * 101.48336 * 37.29548 * 12 11 10 14 14 O 1.42901 * 110.72060 * 82.69278 * 13 12 11 15 15 C 1.50696 * 110.87183 * 205.89880 * 13 12 11 16 16 H 1.08000 * 119.99826 * 113.61503 * 15 13 12 17 17 C 1.37876 * 120.00388 * 293.60774 * 15 13 12 18 18 N 1.31512 * 119.99531 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00469 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47008 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47309 * 119.99987 * 19 17 15 22 22 H 1.48494 * 109.47349 * 240.00321 * 19 17 15 23 23 C 1.47019 * 125.65613 * 179.97438 * 10 8 7 24 24 C 1.38245 * 120.14696 * 359.76128 * 6 5 4 25 25 C 1.38565 * 119.99806 * 0.51620 * 24 6 5 26 26 O 1.35991 * 120.07010 * 179.74110 * 25 24 6 27 27 C 1.42903 * 117.00364 * 359.72700 * 26 25 24 28 28 H 1.08999 * 109.47403 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46619 * 299.99809 * 1 2 3 31 31 H 1.08004 * 119.99976 * 359.94972 * 4 3 2 32 32 H 1.07996 * 119.92892 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46743 * 209.99765 * 7 6 5 34 34 H 1.09004 * 109.47025 * 329.99654 * 7 6 5 35 35 H 1.09003 * 110.36963 * 274.74482 * 11 10 8 36 36 H 1.09007 * 110.36533 * 37.06553 * 11 10 8 37 37 H 1.08995 * 111.19108 * 279.19343 * 12 11 10 38 38 H 1.08999 * 110.94069 * 155.28517 * 12 11 10 39 39 H 0.96706 * 113.99419 * 66.48170 * 14 13 12 40 40 H 0.96996 * 120.00242 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.88344 * 300.44957 * 23 10 8 42 42 H 1.09006 * 109.87867 * 61.60660 * 23 10 8 43 43 H 1.08004 * 119.99970 * 180.28300 * 24 6 5 44 44 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 45 45 H 1.09001 * 109.46938 * 59.99845 * 27 26 25 46 46 H 1.09004 * 109.46926 * 299.99967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 0.0006 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6798 0.0016 7 6 3.9838 5.0243 0.0028 8 6 4.2101 5.4716 1.4239 9 8 3.8542 4.7676 2.3452 10 7 4.8091 6.6533 1.6712 11 6 5.2961 7.5997 0.6512 12 6 5.3025 8.9780 1.3631 13 6 5.7582 8.5848 2.7933 14 8 7.1812 8.4710 2.8571 15 6 5.2587 9.5801 3.8086 16 1 4.5299 9.2791 4.5466 17 6 5.7322 10.8750 3.7955 18 7 6.6194 11.2415 2.8966 19 14 5.1137 12.1085 5.0544 20 1 4.1273 11.4508 5.9487 21 1 6.2562 12.6080 5.8609 22 1 4.4662 13.2472 4.3550 23 6 5.0901 7.2096 3.0027 24 6 4.0603 2.5233 0.0065 25 6 3.4360 1.2863 0.0002 26 8 4.1795 0.1476 -0.0003 27 6 5.6004 0.3006 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2147 2.3196 0.0003 32 1 1.3343 4.5115 0.0012 33 1 4.9421 4.9467 -0.5108 34 1 3.3540 5.7508 -0.5108 35 1 6.3032 7.3297 0.3331 36 1 4.6196 7.6178 -0.2034 37 1 4.3056 9.4184 1.3780 38 1 6.0192 9.6540 0.8968 39 1 7.6487 9.3082 2.7315 40 1 6.9523 12.1525 2.8870 41 1 4.1599 7.3298 3.5581 42 1 5.7655 6.5483 3.5457 43 1 5.1387 2.5839 0.0115 44 1 6.0717 -0.6823 -0.0002 45 1 5.9065 0.8500 0.8901 46 1 5.9067 0.8508 -0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:52 Heat of formation + Delta-G solvation = -128.503885 kcal Electronic energy + Delta-G solvation = -28923.841283 eV Core-core repulsion = 24779.522451 eV Total energy + Delta-G solvation = -4144.318832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69817 -39.50097 -38.52335 -37.62562 -36.70091 -34.34443 -32.20444 -32.16524 -30.40518 -29.86349 -28.69972 -28.06733 -27.37378 -26.42400 -24.83718 -22.51654 -22.26605 -21.53071 -19.77242 -18.87555 -18.37797 -17.33892 -17.12475 -16.84900 -16.59414 -16.13093 -15.40695 -15.35301 -15.01872 -14.99637 -14.85194 -14.57741 -14.21692 -14.01141 -13.83047 -13.29463 -13.03593 -12.72057 -12.49297 -12.21286 -12.18709 -12.01795 -11.80856 -11.50790 -11.43470 -11.39311 -11.30577 -11.24726 -11.18544 -10.96158 -10.92755 -10.64404 -10.49645 -10.16210 -9.50178 -9.35791 -8.74502 -8.70037 -8.25231 -8.03035 -7.81188 -6.33884 -4.40861 1.23099 1.37828 3.05186 3.14724 3.16046 3.18781 3.25360 3.29939 3.42954 3.79930 4.23647 4.61033 4.67540 4.84580 4.91836 4.95845 4.97942 5.02185 5.04990 5.08457 5.16857 5.27116 5.33729 5.38475 5.42281 5.50196 5.51828 5.67463 5.74559 5.88307 5.97296 6.03367 6.17868 6.20805 6.43151 6.53677 6.60304 6.66754 6.86798 6.93674 6.94119 7.25763 7.29913 7.48985 7.69791 7.96548 8.09648 8.60154 8.64281 9.27675 9.41307 10.74031 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002354 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.633288 B =11890.142130 C =12431.513265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.094 3.906 4 C -0.170 4.170 5 C -0.101 4.101 6 C -0.054 4.054 7 C -0.096 4.096 8 C 0.522 3.478 9 O -0.546 6.546 10 N -0.610 5.610 11 C 0.095 3.905 12 C -0.137 4.137 13 C 0.247 3.753 14 O -0.587 6.587 15 C -0.533 4.533 16 H 0.065 0.935 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.123 3.877 24 C -0.155 4.155 25 C 0.099 3.901 26 O -0.309 6.309 27 C 0.026 3.974 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.386 0.614 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.133 0.867 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -15.162 -11.279 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.049 3.951 4 C -0.189 4.189 5 C -0.119 4.119 6 C -0.055 4.055 7 C -0.136 4.136 8 C 0.309 3.691 9 O -0.424 6.424 10 N -0.343 5.343 11 C -0.028 4.028 12 C -0.176 4.176 13 C 0.207 3.793 14 O -0.397 6.397 15 C -0.572 4.572 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.174 4.174 25 C 0.054 3.946 26 O -0.223 6.223 27 C -0.069 4.069 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.151 0.849 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.033 -16.473 -10.751 20.890 hybrid contribution -0.122 1.822 0.507 1.896 sum -7.156 -14.650 -10.244 19.255 Atomic orbital electron populations 1.23037 0.78832 1.03730 1.01221 1.86146 1.20807 1.26089 1.89271 1.18192 0.89080 0.85101 1.02774 1.20974 0.99758 0.91391 1.06782 1.20692 0.93692 0.97157 1.00358 1.19023 0.93269 0.93319 0.99905 1.20617 1.02477 0.94918 0.95561 1.20033 0.78045 0.80156 0.90821 1.90695 1.51633 1.53647 1.46411 1.48665 1.57657 1.18389 1.09586 1.22546 0.98172 0.91126 0.90938 1.23352 1.02327 0.93116 0.98797 1.19447 0.79573 0.88948 0.91358 1.86098 1.19538 1.38462 1.95651 1.21587 1.25163 0.94769 1.15655 0.91662 1.24993 0.94361 0.98226 0.95510 1.69576 1.30305 1.19450 1.34497 0.86344 0.78842 0.80603 0.81110 1.19569 1.20729 1.20806 1.22072 0.99503 0.95440 0.82873 1.20876 1.00207 0.90558 1.05766 1.18129 0.88183 0.85924 1.02389 1.86137 1.18625 1.28294 1.89224 1.23068 0.78710 1.03703 1.01465 0.92829 0.88410 0.92711 0.84836 0.85598 0.88277 0.88012 0.91846 0.92102 0.91411 0.89657 0.76182 0.92133 0.91087 0.92181 0.84892 0.88315 0.92508 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.99 10.28 -34.20 -0.35 -4.34 16 3 C 0.09 1.29 6.70 -39.12 -0.26 1.02 16 4 C -0.17 -2.07 9.04 -39.46 -0.36 -2.42 16 5 C -0.10 -1.29 9.69 -39.57 -0.38 -1.68 16 6 C -0.05 -0.75 4.37 -104.61 -0.46 -1.20 16 7 C -0.10 -1.26 4.83 -29.04 -0.14 -1.40 16 8 C 0.52 9.46 7.84 -10.99 -0.09 9.37 16 9 O -0.55 -11.87 16.36 5.55 0.09 -11.78 16 10 N -0.61 -11.67 3.32 -170.38 -0.57 -12.23 16 11 C 0.09 1.62 6.69 -2.41 -0.02 1.60 16 12 C -0.14 -2.84 5.69 -24.46 -0.14 -2.98 16 13 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 14 O -0.59 -14.58 13.08 -35.23 -0.46 -15.04 16 15 C -0.53 -13.73 8.22 -34.44 -0.28 -14.01 16 16 H 0.07 1.70 7.53 -52.49 -0.40 1.30 16 17 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 18 N -0.90 -22.62 10.70 55.43 0.59 -22.02 16 19 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.12 2.74 6.22 -3.07 -0.02 2.72 16 24 C -0.16 -2.11 8.69 -39.46 -0.34 -2.45 16 25 C 0.10 1.41 6.70 -39.12 -0.26 1.15 16 26 O -0.31 -4.20 10.28 -34.21 -0.35 -4.56 16 27 C 0.03 0.24 9.81 101.05 0.99 1.24 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 31 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.10 1.11 8.09 -51.93 -0.42 0.69 16 34 H 0.10 1.12 7.80 -51.93 -0.40 0.71 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 37 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 38 H 0.08 1.83 7.77 -51.93 -0.40 1.43 16 39 H 0.39 9.67 6.98 45.56 0.32 9.98 16 40 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 41 H 0.07 1.62 7.63 -51.93 -0.40 1.23 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.13 1.59 6.30 -52.48 -0.33 1.26 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 46 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 LS Contribution 378.77 15.07 5.71 5.71 Total: -1.00 -31.34 378.77 -7.30 -38.64 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.01 Total: 11.03 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.94 Total: -0.37 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.03 Total: -34.26 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.07 Total: -35.72 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.34 -7.30 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.859 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds