Wall clock time and date at job start Tue Mar 31 2020 18:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35988 * 117.00171 * 2 1 4 4 C 1.38562 * 120.07446 * 0.02929 * 3 2 1 5 5 C 1.38247 * 120.00483 * 179.97438 * 4 3 2 6 6 C 1.38252 * 120.14211 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92538 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47642 * 89.99297 * 7 6 5 9 9 O 1.21288 * 119.99703 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00632 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64436 * 359.69684 * 10 8 7 12 12 C 1.55132 * 104.72532 * 155.81263 * 11 10 8 13 13 C 1.55163 * 101.48336 * 37.29548 * 12 11 10 14 14 O 1.42901 * 110.72060 * 82.69278 * 13 12 11 15 15 C 1.50696 * 110.87183 * 205.89880 * 13 12 11 16 16 H 1.08000 * 119.99826 * 113.61503 * 15 13 12 17 17 C 1.37876 * 120.00388 * 293.60774 * 15 13 12 18 18 N 1.31512 * 119.99531 * 0.02562 * 17 15 13 19 19 Si 1.86792 * 120.00469 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47008 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47309 * 119.99987 * 19 17 15 22 22 H 1.48494 * 109.47349 * 240.00321 * 19 17 15 23 23 C 1.47019 * 125.65613 * 179.97438 * 10 8 7 24 24 C 1.38245 * 120.14696 * 359.76128 * 6 5 4 25 25 C 1.38565 * 119.99806 * 0.51620 * 24 6 5 26 26 O 1.35991 * 120.07010 * 179.74110 * 25 24 6 27 27 C 1.42903 * 117.00364 * 359.72700 * 26 25 24 28 28 H 1.08999 * 109.47403 * 59.99403 * 1 2 3 29 29 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46619 * 299.99809 * 1 2 3 31 31 H 1.08004 * 119.99976 * 359.94972 * 4 3 2 32 32 H 1.07996 * 119.92892 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46743 * 209.99765 * 7 6 5 34 34 H 1.09004 * 109.47025 * 329.99654 * 7 6 5 35 35 H 1.09003 * 110.36963 * 274.74482 * 11 10 8 36 36 H 1.09007 * 110.36533 * 37.06553 * 11 10 8 37 37 H 1.08995 * 111.19108 * 279.19343 * 12 11 10 38 38 H 1.08999 * 110.94069 * 155.28517 * 12 11 10 39 39 H 0.96706 * 113.99419 * 66.48170 * 14 13 12 40 40 H 0.96996 * 120.00242 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.88344 * 300.44957 * 23 10 8 42 42 H 1.09006 * 109.87867 * 61.60660 * 23 10 8 43 43 H 1.08004 * 119.99970 * 180.28300 * 24 6 5 44 44 H 1.09002 * 109.47382 * 179.97438 * 27 26 25 45 45 H 1.09001 * 109.46938 * 59.99845 * 27 26 25 46 46 H 1.09004 * 109.46926 * 299.99967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 0.0006 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6798 0.0016 7 6 3.9838 5.0243 0.0028 8 6 4.2101 5.4716 1.4239 9 8 3.8542 4.7676 2.3452 10 7 4.8091 6.6533 1.6712 11 6 5.2961 7.5997 0.6512 12 6 5.3025 8.9780 1.3631 13 6 5.7582 8.5848 2.7933 14 8 7.1812 8.4710 2.8571 15 6 5.2587 9.5801 3.8086 16 1 4.5299 9.2791 4.5466 17 6 5.7322 10.8750 3.7955 18 7 6.6194 11.2415 2.8966 19 14 5.1137 12.1085 5.0544 20 1 4.1273 11.4508 5.9487 21 1 6.2562 12.6080 5.8609 22 1 4.4662 13.2472 4.3550 23 6 5.0901 7.2096 3.0027 24 6 4.0603 2.5233 0.0065 25 6 3.4360 1.2863 0.0002 26 8 4.1795 0.1476 -0.0003 27 6 5.6004 0.3006 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.2147 2.3196 0.0003 32 1 1.3343 4.5115 0.0012 33 1 4.9421 4.9467 -0.5108 34 1 3.3540 5.7508 -0.5108 35 1 6.3032 7.3297 0.3331 36 1 4.6196 7.6178 -0.2034 37 1 4.3056 9.4184 1.3780 38 1 6.0192 9.6540 0.8968 39 1 7.6487 9.3082 2.7315 40 1 6.9523 12.1525 2.8870 41 1 4.1599 7.3298 3.5581 42 1 5.7655 6.5483 3.5457 43 1 5.1387 2.5839 0.0115 44 1 6.0717 -0.6823 -0.0002 45 1 5.9065 0.8500 0.8901 46 1 5.9067 0.8508 -0.8899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:51 Heat of formation + Delta-G solvation = -149.735954 kcal Electronic energy + Delta-G solvation = -28924.761975 eV Core-core repulsion = 24779.522451 eV Total energy + Delta-G solvation = -4145.239523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66913 -40.93522 -39.40932 -39.10989 -37.85520 -36.08498 -34.14823 -33.25123 -31.44806 -31.31404 -30.14799 -29.23195 -28.08805 -27.60502 -26.44298 -23.99673 -23.18318 -22.60768 -21.48992 -20.25639 -19.35490 -19.19768 -18.09035 -18.04595 -17.76326 -17.01406 -16.97545 -16.84877 -16.37279 -16.14534 -15.97720 -15.72090 -15.42233 -15.25517 -15.09924 -14.72561 -14.36348 -13.87284 -13.83864 -13.53385 -13.30424 -13.24569 -13.15235 -13.09005 -12.97227 -12.67151 -12.65893 -12.40634 -12.27224 -12.14858 -12.08003 -12.03574 -11.97739 -11.86468 -11.28224 -10.89819 -10.62408 -10.12753 -9.68819 -9.59444 -8.77259 -8.26285 -6.39873 0.26828 0.40028 1.39667 1.44503 1.54133 1.66082 2.05971 2.34903 2.36416 2.39553 2.73216 2.99344 3.61242 3.70948 3.80334 3.94342 4.02659 4.06071 4.13731 4.28760 4.33516 4.36471 4.38200 4.41685 4.43340 4.46373 4.54350 4.58935 4.61642 4.68597 4.70469 4.74260 4.80004 4.93615 5.10352 5.20314 5.24860 5.28373 5.47740 5.54623 5.56916 5.69116 5.77058 6.06482 6.09569 6.59505 6.61056 6.68303 7.18890 7.31200 7.45159 8.80218 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002354 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.633288 B =11890.142130 C =12431.513265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.108 4.108 6 C -0.072 4.072 7 C -0.083 4.083 8 C 0.519 3.481 9 O -0.588 6.588 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.129 4.129 13 C 0.234 3.766 14 O -0.595 6.595 15 C -0.561 4.561 16 H 0.050 0.950 17 C 0.037 3.963 18 N -0.907 5.907 19 Si 0.959 3.041 20 H -0.277 1.277 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.129 3.871 24 C -0.163 4.163 25 C 0.077 3.923 26 O -0.330 6.330 27 C 0.019 3.981 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.383 0.617 40 H 0.273 0.727 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.143 0.857 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.657 -14.997 -13.100 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.034 3.966 4 C -0.189 4.189 5 C -0.126 4.126 6 C -0.073 4.073 7 C -0.122 4.122 8 C 0.310 3.690 9 O -0.469 6.469 10 N -0.345 5.345 11 C -0.018 4.018 12 C -0.168 4.168 13 C 0.194 3.806 14 O -0.406 6.406 15 C -0.600 4.600 16 H 0.068 0.932 17 C -0.164 4.164 18 N -0.547 5.547 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.199 1.199 23 C 0.006 3.994 24 C -0.182 4.182 25 C 0.032 3.968 26 O -0.244 6.244 27 C -0.075 4.075 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.079 0.921 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.161 0.839 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.892 -16.309 -12.604 22.072 hybrid contribution 0.131 1.697 1.121 2.038 sum -7.761 -14.613 -11.483 20.140 Atomic orbital electron populations 1.23348 0.76578 1.05507 1.02241 1.86114 1.23254 1.26057 1.89229 1.18505 0.89390 0.85925 1.02808 1.21279 1.01088 0.90711 1.05793 1.21008 0.93745 0.98098 0.99793 1.19201 0.93843 0.93506 1.00730 1.20647 1.04505 0.95177 0.91892 1.20989 0.76441 0.78963 0.92637 1.90677 1.53166 1.54696 1.48379 1.48731 1.58068 1.19261 1.08473 1.22602 1.00071 0.88032 0.91078 1.23140 1.01338 0.95197 0.97124 1.19605 0.78865 0.89221 0.92929 1.86083 1.20388 1.38229 1.95866 1.21778 1.25689 0.95998 1.16497 0.93193 1.25573 0.94515 0.99350 0.96974 1.69622 1.30254 1.19896 1.34895 0.85497 0.78197 0.78722 0.79117 1.20191 1.20475 1.19898 1.21751 0.98115 0.94732 0.84803 1.21058 1.00868 0.90552 1.05687 1.18445 0.88891 0.86355 1.03148 1.86102 1.20390 1.28583 1.89336 1.23307 0.77037 1.05316 1.01864 0.91238 0.86422 0.92133 0.82249 0.83894 0.85654 0.84901 0.90823 0.87425 0.92107 0.90523 0.76600 0.91740 0.92611 0.94360 0.83944 0.86116 0.93054 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.34 10.28 -79.55 -0.82 -9.16 16 3 C 0.08 2.12 6.70 22.57 0.15 2.27 16 4 C -0.17 -3.85 9.04 22.35 0.20 -3.65 16 5 C -0.11 -2.56 9.69 22.28 0.22 -2.34 16 6 C -0.07 -1.84 4.37 -19.86 -0.09 -1.92 16 7 C -0.08 -1.92 4.83 29.10 0.14 -1.78 16 8 C 0.52 18.03 7.84 87.66 0.69 18.72 16 9 O -0.59 -25.58 16.36 -3.05 -0.05 -25.63 16 10 N -0.61 -22.66 3.32 -811.34 -2.70 -25.36 16 11 C 0.10 3.25 6.69 86.93 0.58 3.83 16 12 C -0.13 -5.22 5.69 32.07 0.18 -5.04 16 13 C 0.23 11.18 0.85 -10.35 -0.01 11.17 16 14 O -0.60 -29.95 13.08 -148.98 -1.95 -31.90 16 15 C -0.56 -29.43 8.22 25.60 0.21 -29.22 16 16 H 0.05 2.69 7.53 -2.91 -0.02 2.67 16 17 C 0.04 1.87 5.28 84.65 0.45 2.31 16 18 N -0.91 -45.38 10.70 21.45 0.23 -45.15 16 19 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 C 0.13 5.89 6.22 86.73 0.54 6.43 16 24 C -0.16 -4.27 8.69 22.35 0.19 -4.08 16 25 C 0.08 2.17 6.70 22.57 0.15 2.32 16 26 O -0.33 -8.95 10.28 -79.59 -0.82 -9.76 16 27 C 0.02 0.35 9.81 113.37 1.11 1.46 16 28 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 31 H 0.16 2.58 6.30 -2.91 -0.02 2.56 16 32 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.13 2.27 8.09 -2.39 -0.02 2.25 16 34 H 0.13 2.27 7.80 -2.39 -0.02 2.25 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.11 2.43 7.48 -2.38 -0.02 2.41 16 37 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 38 H 0.08 3.22 7.77 -2.39 -0.02 3.20 16 39 H 0.38 19.39 6.98 -74.05 -0.52 18.87 16 40 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 41 H 0.06 2.66 7.63 -2.39 -0.02 2.64 16 42 H 0.04 1.86 8.07 -2.38 -0.02 1.84 16 43 H 0.14 3.26 6.30 -2.91 -0.02 3.24 16 44 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 0.97 7.65 -2.39 -0.02 0.96 16 46 H 0.07 1.03 7.68 -2.38 -0.02 1.01 16 Total: -1.00 -69.57 378.77 2.24 -67.32 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: 0.49 Total: 34.88 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.83 Total: 1.84 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -2.47 Total: -70.50 kcal Atomic # 8 Polarization: -72.82 SS G_CDS: -3.64 Total: -76.46 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -69.57 2.24 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.414 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds