Wall clock time and date at job start Tue Mar 31 2020 18:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 116.99933 * 2 1 4 4 C 1.38784 * 120.02955 * 0.25580 * 3 2 1 5 5 C 1.38166 * 120.05714 * 180.29511 * 4 3 2 6 6 C 1.38176 * 120.10985 * 359.72450 * 5 4 3 7 7 C 1.38776 * 120.05622 * 359.97438 * 6 5 4 8 8 O 1.35896 * 120.03141 * 179.97438 * 7 6 5 9 9 C 1.42899 * 116.99699 * 0.02562 * 8 7 6 10 10 C 1.38630 * 120.03007 * 180.02562 * 3 2 1 11 11 C 1.50704 * 120.05259 * 359.97438 * 10 3 2 12 12 C 1.50698 * 109.47241 * 269.72634 * 11 10 3 13 13 O 1.21287 * 120.00158 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99818 * 180.02562 * 12 11 10 15 15 C 1.47016 * 125.65194 * 0.02562 * 14 12 11 16 16 C 1.54317 * 107.27544 * 178.89694 * 15 14 12 17 17 C 1.55161 * 102.94040 * 337.81168 * 16 15 14 18 18 O 1.42903 * 111.00309 * 277.38547 * 17 16 15 19 19 C 1.50696 * 111.00179 * 153.57607 * 17 16 15 20 20 H 1.08003 * 119.99607 * 243.51886 * 19 17 16 21 21 C 1.37879 * 120.00584 * 63.24935 * 19 17 16 22 22 N 1.31521 * 119.99465 * 354.29255 * 21 19 17 23 23 Si 1.86794 * 120.00270 * 174.29525 * 21 19 17 24 24 H 1.48502 * 109.46911 * 94.98366 * 23 21 19 25 25 H 1.48502 * 109.47227 * 214.97830 * 23 21 19 26 26 H 1.48496 * 109.47481 * 334.98199 * 23 21 19 27 27 C 1.47426 * 125.64565 * 179.97438 * 14 12 11 28 28 H 1.09006 * 109.46796 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47446 * 299.99541 * 1 2 3 30 30 H 1.09000 * 109.47299 * 59.99884 * 1 2 3 31 31 H 1.07997 * 119.96816 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.94909 * 179.70634 * 5 4 3 33 33 H 1.08003 * 119.97792 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47672 * 300.00517 * 9 8 7 35 35 H 1.09007 * 109.46892 * 60.00724 * 9 8 7 36 36 H 1.09002 * 109.47052 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.46554 * 149.72472 * 11 10 3 38 38 H 1.08992 * 109.47000 * 29.72730 * 11 10 3 39 39 H 1.09007 * 109.87765 * 59.47967 * 15 14 12 40 40 H 1.09005 * 109.88215 * 298.31861 * 15 14 12 41 41 H 1.09001 * 110.72598 * 219.44849 * 16 15 14 42 42 H 1.08996 * 110.71948 * 96.17114 * 16 15 14 43 43 H 0.96701 * 114.00052 * 295.42104 * 18 17 16 44 44 H 0.97000 * 119.99793 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.37052 * 85.33270 * 27 14 12 46 46 H 1.09004 * 110.36714 * 323.00737 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2906 2.3751 0.0054 5 6 1.9172 3.6065 -0.0008 6 6 3.2969 3.6822 -0.0066 7 6 4.0567 2.5209 -0.0056 8 8 5.4136 2.5959 -0.0118 9 6 5.9910 3.9030 -0.0185 10 6 3.4303 1.2841 -0.0005 11 6 4.2529 0.0214 -0.0005 12 6 4.5333 -0.3955 1.4202 13 8 4.1068 0.2672 2.3421 14 7 5.2582 -1.5047 1.6664 15 6 5.8336 -2.3958 0.6485 16 6 6.5982 -3.5098 1.3940 17 6 6.8862 -2.8680 2.7770 18 8 8.0461 -2.0350 2.7235 19 6 7.0314 -3.9236 3.8425 20 1 6.3287 -3.9643 4.6617 21 6 8.0581 -4.8410 3.7689 22 7 8.8424 -4.8667 2.7134 23 14 8.3349 -6.0474 5.1679 24 1 7.6442 -7.3261 4.8628 25 1 9.7903 -6.2965 5.3260 26 1 7.7903 -5.4788 6.4269 27 6 5.6061 -2.0250 3.0012 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2122 2.3185 0.0100 32 1 1.3278 4.5114 -0.0014 33 1 3.7845 4.6459 -0.0118 34 1 5.6639 4.4402 -0.9087 35 1 5.6718 4.4458 0.8712 36 1 7.0779 3.8201 -0.0226 37 1 5.1946 0.2014 -0.5191 38 1 3.7033 -0.7702 -0.5097 39 1 6.5200 -1.8370 0.0121 40 1 5.0376 -2.8323 0.0451 41 1 7.5284 -3.7502 0.8792 42 1 5.9759 -4.3980 1.5031 43 1 8.8654 -2.5132 2.5358 44 1 9.5645 -5.5123 2.6614 45 1 4.8016 -2.6519 3.3857 46 1 5.8087 -1.2030 3.6878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:25 Heat of formation + Delta-G solvation = -149.955794 kcal Electronic energy + Delta-G solvation = -29805.804816 eV Core-core repulsion = 25660.555760 eV Total energy + Delta-G solvation = -4145.249056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76356 -40.74985 -39.95457 -38.88139 -37.31811 -36.04951 -34.21103 -33.97362 -31.56050 -30.47589 -30.15002 -28.89968 -28.67976 -27.47645 -26.63661 -24.02948 -22.79678 -22.73465 -21.54823 -20.28961 -19.40752 -19.11148 -18.16063 -17.92203 -17.29508 -17.05154 -16.86972 -16.79805 -16.57307 -16.39431 -16.16890 -15.83484 -15.71005 -15.26369 -14.84772 -14.32656 -14.21410 -13.96434 -13.78151 -13.64488 -13.37501 -13.29239 -13.23852 -13.16105 -12.96245 -12.63651 -12.59651 -12.46048 -12.37291 -12.29733 -12.26805 -11.84862 -11.68300 -11.63101 -11.24388 -10.92280 -10.66927 -10.12940 -9.54176 -9.32856 -9.07649 -8.23053 -6.37942 0.33147 0.46984 1.41641 1.45344 1.55069 1.70441 2.01371 2.11701 2.41111 2.77386 2.77911 3.00887 3.64644 3.70839 3.90091 3.92701 4.03427 4.07379 4.12490 4.25591 4.36132 4.37630 4.39413 4.41532 4.43622 4.45952 4.49002 4.58048 4.62524 4.69588 4.71954 4.73800 4.89652 4.97341 5.18537 5.25937 5.33184 5.33689 5.46017 5.46356 5.56444 5.57271 5.78077 6.08431 6.38280 6.46131 6.63575 6.68741 7.22136 7.32429 7.38076 8.82255 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.003010 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.063477 B = 9299.773129 C =10198.320142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.162 3.838 4 C -0.249 4.249 5 C -0.039 4.039 6 C -0.250 4.250 7 C 0.159 3.841 8 O -0.337 6.337 9 C 0.020 3.980 10 C -0.165 4.165 11 C -0.065 4.065 12 C 0.527 3.473 13 O -0.589 6.589 14 N -0.613 5.613 15 C 0.105 3.895 16 C -0.122 4.122 17 C 0.235 3.765 18 O -0.591 6.591 19 C -0.564 4.564 20 H 0.053 0.947 21 C 0.038 3.962 22 N -0.903 5.903 23 Si 0.960 3.040 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.278 1.278 27 C 0.127 3.873 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.163 0.837 33 H 0.153 0.847 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.377 0.623 44 H 0.271 0.729 45 H 0.069 0.931 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.063 13.928 -12.269 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.116 3.884 4 C -0.267 4.267 5 C -0.057 4.057 6 C -0.268 4.268 7 C 0.113 3.887 8 O -0.250 6.250 9 C -0.074 4.074 10 C -0.167 4.167 11 C -0.104 4.104 12 C 0.318 3.682 13 O -0.471 6.471 14 N -0.346 5.346 15 C -0.017 4.017 16 C -0.161 4.161 17 C 0.195 3.805 18 O -0.400 6.400 19 C -0.602 4.602 20 H 0.071 0.929 21 C -0.164 4.164 22 N -0.542 5.542 23 Si 0.785 3.215 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.203 1.203 27 C 0.004 3.996 28 H 0.133 0.867 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.173 0.827 32 H 0.181 0.819 33 H 0.171 0.829 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.393 14.362 -11.776 22.898 hybrid contribution 0.707 -0.971 0.952 1.532 sum -12.686 13.391 -10.825 21.388 Atomic orbital electron populations 1.23363 0.76088 1.05487 1.02488 1.86029 1.23757 1.26835 1.88141 1.18608 0.90667 0.85439 0.93694 1.21412 1.01224 0.91592 1.12496 1.21108 0.93547 0.98076 0.92980 1.21409 0.95471 0.97364 1.12590 1.18680 0.82880 0.93380 0.93762 1.86049 1.17429 1.33390 1.88140 1.23349 0.99849 0.81659 1.02513 1.17997 0.91265 0.92943 1.14510 1.20118 1.01498 0.96480 0.92296 1.20832 0.76615 0.78399 0.92365 1.90595 1.53969 1.54371 1.48131 1.48678 1.51869 1.25390 1.08653 1.22233 0.97455 0.91385 0.90674 1.22941 0.99751 0.96061 0.97360 1.19748 0.81767 0.86252 0.92709 1.86144 1.19090 1.39846 1.94880 1.21646 1.14185 1.14307 1.10096 0.92884 1.25596 0.94984 0.98032 0.97751 1.69832 1.18866 1.37295 1.28183 0.85527 0.77516 0.78911 0.79528 1.19794 1.20366 1.20266 1.22086 0.96548 0.96309 0.84643 0.86728 0.92161 0.90484 0.82729 0.81925 0.82921 0.90290 0.92173 0.87057 0.87537 0.86822 0.91089 0.89568 0.90414 0.91965 0.77425 0.91938 0.91330 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.12 9.53 -92.33 -0.88 -10.00 16 3 C 0.16 4.64 6.66 22.49 0.15 4.79 16 4 C -0.25 -5.46 9.04 22.38 0.20 -5.25 16 5 C -0.04 -0.76 10.04 22.24 0.22 -0.54 16 6 C -0.25 -5.66 9.04 22.38 0.20 -5.46 16 7 C 0.16 4.73 6.66 22.49 0.15 4.88 16 8 O -0.34 -10.00 9.54 -92.38 -0.88 -10.88 16 9 C 0.02 0.38 9.81 113.37 1.11 1.50 16 10 C -0.17 -5.36 4.40 -19.67 -0.09 -5.45 16 11 C -0.06 -2.17 4.58 29.10 0.13 -2.03 16 12 C 0.53 22.54 7.84 87.66 0.69 23.22 16 13 O -0.59 -29.46 16.29 -3.05 -0.05 -29.51 16 14 N -0.61 -26.52 3.33 -811.81 -2.70 -29.22 16 15 C 0.10 3.91 6.49 86.73 0.56 4.47 16 16 C -0.12 -5.42 5.37 31.78 0.17 -5.24 16 17 C 0.24 11.92 0.88 -10.15 -0.01 11.91 16 18 O -0.59 -31.47 13.17 -148.98 -1.96 -33.43 16 19 C -0.56 -30.48 8.25 25.60 0.21 -30.27 16 20 H 0.05 2.90 7.79 -2.91 -0.02 2.88 16 21 C 0.04 1.97 5.26 84.65 0.45 2.42 16 22 N -0.90 -46.54 10.76 21.45 0.23 -46.31 16 23 Si 0.96 41.75 29.54 68.60 2.03 43.77 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.13 6.22 6.08 86.85 0.53 6.74 16 28 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 30 H 0.08 0.90 7.67 -2.39 -0.02 0.89 16 31 H 0.16 2.39 6.29 -2.91 -0.02 2.37 16 32 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.15 2.52 6.29 -2.91 -0.02 2.51 16 34 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 35 H 0.06 1.06 7.66 -2.38 -0.02 1.04 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.11 3.37 7.53 -2.39 -0.02 3.35 16 38 H 0.11 3.39 7.52 -2.39 -0.02 3.37 16 39 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.08 3.56 7.52 -2.39 -0.02 3.54 16 42 H 0.06 2.77 8.03 -2.39 -0.02 2.76 16 43 H 0.38 19.77 7.57 -74.06 -0.56 19.21 16 44 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 45 H 0.07 3.29 8.03 -2.39 -0.02 3.27 16 46 H 0.04 2.18 8.04 -2.39 -0.02 2.16 16 Total: -1.00 -71.90 377.88 2.02 -69.87 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.44 Total: 38.58 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.80 Total: 7.12 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -2.47 Total: -75.52 kcal Atomic # 8 Polarization: -80.05 SS G_CDS: -3.77 Total: -83.83 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -71.90 2.02 -69.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.082 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds