Wall clock time and date at job start Tue Mar 31 2020 18:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99807 * 2 1 4 4 C 1.38750 * 120.05696 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94455 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05648 * 359.97111 * 5 4 3 7 7 C 1.38242 * 120.11113 * 0.05223 * 6 5 4 8 8 C 1.50698 * 119.97391 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47243 * 89.99612 * 8 7 6 10 10 H 1.08998 * 109.47310 * 55.34240 * 9 8 7 11 11 O 1.42907 * 109.47033 * 295.34186 * 9 8 7 12 12 C 1.50699 * 109.46965 * 175.34320 * 9 8 7 13 13 O 1.21284 * 120.00191 * 112.37284 * 12 9 8 14 14 N 1.34777 * 120.00080 * 292.36662 * 12 9 8 15 15 C 1.47016 * 125.65030 * 175.04714 * 14 12 9 16 16 C 1.54326 * 107.27471 * 178.99825 * 15 14 12 17 17 C 1.55154 * 102.93932 * 337.80754 * 16 15 14 18 18 O 1.42908 * 111.00337 * 277.38794 * 17 16 15 19 19 C 1.50698 * 111.00499 * 153.57598 * 17 16 15 20 20 H 1.07999 * 119.99725 * 244.57912 * 19 17 16 21 21 C 1.37878 * 119.99893 * 64.30647 * 19 17 16 22 22 N 1.31513 * 119.99973 * 0.27433 * 21 19 17 23 23 Si 1.86796 * 119.99963 * 180.27633 * 21 19 17 24 24 H 1.48503 * 109.47298 * 89.99683 * 23 21 19 25 25 H 1.48501 * 109.47238 * 209.99842 * 23 21 19 26 26 H 1.48501 * 109.47046 * 329.99807 * 23 21 19 27 27 C 1.47466 * 125.62527 * 355.07392 * 14 12 9 28 28 C 1.38171 * 120.05290 * 0.24465 * 7 6 5 29 29 H 1.09001 * 109.47260 * 60.00428 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99808 * 1 2 3 32 32 H 1.07999 * 120.02688 * 359.95410 * 4 3 2 33 33 H 1.08006 * 119.97662 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.94194 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46871 * 329.99723 * 8 7 6 36 36 H 1.08998 * 109.47357 * 209.99801 * 8 7 6 37 37 H 0.96695 * 113.99947 * 299.99454 * 11 9 8 38 38 H 1.09001 * 109.88531 * 59.57737 * 15 14 12 39 39 H 1.09002 * 110.01276 * 298.48935 * 15 14 12 40 40 H 1.08996 * 110.71994 * 219.44139 * 16 15 14 41 41 H 1.08998 * 110.72058 * 96.16583 * 16 15 14 42 42 H 0.96698 * 113.99925 * 295.41988 * 18 17 16 43 43 H 0.97000 * 120.00086 * 179.97438 * 22 21 19 44 44 H 1.08993 * 110.35217 * 85.23570 * 27 14 12 45 45 H 1.08996 * 110.40768 * 322.88782 * 27 14 12 46 46 H 1.08004 * 120.02493 * 179.72883 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 0.0017 7 6 4.0560 2.5171 0.0017 8 6 5.5608 2.5982 0.0030 9 6 6.0689 2.6250 1.4459 10 1 5.6847 1.7576 1.9826 11 8 5.6185 3.8200 2.0873 12 6 7.5755 2.5906 1.4486 13 8 8.2035 3.5581 1.8234 14 7 8.2251 1.4847 1.0345 15 6 9.6818 1.3508 0.8885 16 6 9.9644 -0.0907 0.4153 17 6 8.6936 -0.8592 0.8646 18 8 8.7829 -1.2370 2.2399 19 6 8.4536 -2.0636 -0.0089 20 1 7.5707 -2.1136 -0.6289 21 6 9.3640 -3.0990 -0.0207 22 7 10.4391 -3.0380 0.7344 23 14 9.0704 -4.5884 -1.1091 24 1 9.6890 -4.3589 -2.4396 25 1 9.6789 -5.7884 -0.4807 26 1 7.6100 -4.8020 -1.2725 27 6 7.5917 0.2089 0.6526 28 6 3.4311 1.2848 -0.0050 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 -0.0017 33 1 1.3339 4.5114 0.0000 34 1 3.7921 4.6381 0.0025 35 1 5.8761 3.5067 -0.5103 36 1 5.9719 1.7293 -0.5109 37 1 5.9233 4.6333 1.6624 38 1 10.1685 1.5282 1.8475 39 1 10.0496 2.0624 0.1492 40 1 10.8511 -0.4910 0.9066 41 1 10.0735 -0.1264 -0.6686 42 1 9.4913 -1.8673 2.4294 43 1 11.0794 -3.7666 0.7263 44 1 7.2858 0.2357 -0.3932 45 1 6.7351 0.0027 1.2942 46 1 4.0206 0.3799 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:45 Heat of formation + Delta-G solvation = -147.654675 kcal Electronic energy + Delta-G solvation = -29592.430270 eV Core-core repulsion = 25447.280997 eV Total energy + Delta-G solvation = -4145.149272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39345 -39.78983 -38.03444 -37.43326 -36.06567 -34.34685 -32.79951 -32.24163 -30.68896 -30.28503 -28.73078 -28.08708 -27.36376 -25.28163 -24.54842 -22.61778 -21.98456 -21.06945 -19.92680 -19.24852 -18.00254 -17.42743 -16.91502 -16.54619 -16.26137 -16.05604 -15.87063 -15.38114 -15.04914 -14.91142 -14.73645 -14.19128 -14.12744 -13.71628 -13.50310 -13.30994 -12.95746 -12.81076 -12.56351 -12.35178 -12.14971 -12.04681 -11.72800 -11.63044 -11.55996 -11.38284 -11.24307 -11.17826 -10.91855 -10.86722 -10.72243 -10.61818 -10.52189 -10.08025 -9.57240 -9.29461 -8.81279 -8.73410 -8.27282 -8.25944 -8.08696 -6.34484 -4.43391 1.20820 1.39663 2.88309 3.14382 3.16042 3.24476 3.27145 3.40497 3.69503 4.20970 4.32800 4.60826 4.66200 4.83921 4.88973 4.91907 4.93794 4.95614 5.01079 5.11736 5.25515 5.27892 5.37000 5.47103 5.51819 5.68901 5.75123 5.81925 5.91214 5.94998 5.98283 6.20206 6.22788 6.23892 6.33452 6.47735 6.54212 6.67439 6.84009 6.89918 7.23795 7.29083 7.30309 7.56835 7.67463 7.90765 8.01164 8.48459 8.58714 9.25173 9.36004 10.73090 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.003763 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.431464 B = 7438.598039 C = 9737.907361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.140 4.140 7 C -0.033 4.033 8 C -0.112 4.112 9 C 0.105 3.895 10 H 0.124 0.876 11 O -0.534 6.534 12 C 0.496 3.504 13 O -0.553 6.553 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.139 4.139 17 C 0.250 3.750 18 O -0.584 6.584 19 C -0.539 4.539 20 H 0.066 0.934 21 C 0.074 3.926 22 N -0.894 5.894 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.107 3.893 28 C -0.146 4.146 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.378 0.622 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.269 0.731 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 9.024 -3.754 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.082 3.918 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.158 4.158 7 C -0.033 4.033 8 C -0.150 4.150 9 C 0.042 3.958 10 H 0.142 0.858 11 O -0.338 6.338 12 C 0.283 3.717 13 O -0.432 6.432 14 N -0.334 5.334 15 C -0.015 4.015 16 C -0.177 4.177 17 C 0.209 3.791 18 O -0.393 6.393 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.129 4.129 22 N -0.533 5.533 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.015 4.015 28 C -0.165 4.165 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.226 0.774 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.236 0.764 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.242 9.293 -3.025 18.106 hybrid contribution 0.468 -0.821 -1.027 1.396 sum -14.774 8.472 -4.052 17.506 Atomic orbital electron populations 1.23035 0.78611 1.03890 1.01135 1.86111 1.21182 1.26929 1.88696 1.18972 0.92259 0.84121 0.96423 1.21188 0.99802 0.92506 1.09724 1.20870 0.94561 0.96832 0.97755 1.20901 0.93583 0.97925 1.03418 1.19394 0.94627 0.92356 0.96931 1.21314 0.91934 1.05095 0.96639 1.21750 0.89795 0.90562 0.93714 0.85834 1.86607 1.74871 1.15108 1.57220 1.21066 0.90644 0.82281 0.77685 1.90660 1.68729 1.35542 1.48307 1.48669 1.08554 1.12454 1.63686 1.22068 0.80074 0.99171 1.00219 1.23223 1.02299 0.91158 1.01048 1.19565 0.88196 0.90209 0.81093 1.86100 1.59289 1.66819 1.27111 1.21433 1.08080 1.02773 1.25406 0.91591 1.24983 0.94341 0.98431 0.95140 1.69651 1.11085 1.33282 1.39306 0.86421 0.78725 0.81626 0.80255 1.20453 1.21013 1.19610 1.22624 0.97629 0.82032 0.99202 1.20399 0.91503 0.98479 1.06069 0.92812 0.88280 0.92750 0.85784 0.85962 0.85989 0.89773 0.88513 0.77396 0.92360 0.92888 0.89648 0.91357 0.76417 0.92069 0.90527 0.91127 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.88 10.50 -19.42 -0.20 -4.08 16 3 C 0.13 1.60 6.69 -39.22 -0.26 1.33 16 4 C -0.21 -2.26 9.04 -39.44 -0.36 -2.62 16 5 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 6 C -0.14 -1.54 9.39 -39.56 -0.37 -1.91 16 7 C -0.03 -0.40 4.96 -104.65 -0.52 -0.92 16 8 C -0.11 -1.37 4.94 -27.88 -0.14 -1.51 16 9 C 0.10 1.54 2.75 -27.88 -0.08 1.46 16 10 H 0.12 1.89 7.42 -51.93 -0.39 1.50 16 11 O -0.53 -7.70 12.49 -55.02 -0.69 -8.38 16 12 C 0.50 9.05 7.18 -10.99 -0.08 8.97 16 13 O -0.55 -11.60 16.65 -14.24 -0.24 -11.84 16 14 N -0.60 -11.38 3.33 -170.49 -0.57 -11.94 16 15 C 0.11 2.10 6.87 -3.07 -0.02 2.07 16 16 C -0.14 -2.95 5.50 -24.90 -0.14 -3.08 16 17 C 0.25 5.68 0.88 -89.62 -0.08 5.60 16 18 O -0.58 -14.34 13.17 -35.23 -0.46 -14.80 16 19 C -0.54 -13.18 8.25 -34.44 -0.28 -13.46 16 20 H 0.07 1.58 7.78 -52.49 -0.41 1.17 16 21 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 22 N -0.89 -22.40 10.76 55.43 0.60 -21.81 16 23 Si 0.90 19.46 29.54 -169.99 -5.02 14.44 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 C 0.11 2.05 4.85 -2.50 -0.01 2.04 16 28 C -0.15 -1.91 9.64 -39.43 -0.38 -2.29 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.12 1.02 6.30 -52.49 -0.33 0.69 16 33 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.08 0.92 8.09 -51.92 -0.42 0.50 16 36 H 0.10 1.21 5.92 -51.93 -0.31 0.91 16 37 H 0.38 4.40 8.76 45.56 0.40 4.80 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.93 7.68 -51.93 -0.40 1.53 16 41 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.38 9.62 7.26 45.56 0.33 9.95 16 43 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 44 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.07 1.32 7.29 -51.93 -0.38 0.94 16 46 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -29.77 377.59 -8.26 -38.03 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -5.15 Total: 17.31 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.22 Total: -2.61 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.03 Total: -33.75 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -1.59 Total: -39.11 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.77 -8.26 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.625 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds