Wall clock time and date at job start Tue Mar 31 2020 18:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35899 * 116.99807 * 2 1 4 4 C 1.38750 * 120.05696 * 359.97438 * 3 2 1 5 5 C 1.38116 * 119.94455 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05648 * 359.97111 * 5 4 3 7 7 C 1.38242 * 120.11113 * 0.05223 * 6 5 4 8 8 C 1.50698 * 119.97391 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47243 * 89.99612 * 8 7 6 10 10 H 1.08998 * 109.47310 * 55.34240 * 9 8 7 11 11 O 1.42907 * 109.47033 * 295.34186 * 9 8 7 12 12 C 1.50699 * 109.46965 * 175.34320 * 9 8 7 13 13 O 1.21284 * 120.00191 * 112.37284 * 12 9 8 14 14 N 1.34777 * 120.00080 * 292.36662 * 12 9 8 15 15 C 1.47016 * 125.65030 * 175.04714 * 14 12 9 16 16 C 1.54326 * 107.27471 * 178.99825 * 15 14 12 17 17 C 1.55154 * 102.93932 * 337.80754 * 16 15 14 18 18 O 1.42908 * 111.00337 * 277.38794 * 17 16 15 19 19 C 1.50698 * 111.00499 * 153.57598 * 17 16 15 20 20 H 1.07999 * 119.99725 * 244.57912 * 19 17 16 21 21 C 1.37878 * 119.99893 * 64.30647 * 19 17 16 22 22 N 1.31513 * 119.99973 * 0.27433 * 21 19 17 23 23 Si 1.86796 * 119.99963 * 180.27633 * 21 19 17 24 24 H 1.48503 * 109.47298 * 89.99683 * 23 21 19 25 25 H 1.48501 * 109.47238 * 209.99842 * 23 21 19 26 26 H 1.48501 * 109.47046 * 329.99807 * 23 21 19 27 27 C 1.47466 * 125.62527 * 355.07392 * 14 12 9 28 28 C 1.38171 * 120.05290 * 0.24465 * 7 6 5 29 29 H 1.09001 * 109.47260 * 60.00428 * 1 2 3 30 30 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47358 * 299.99808 * 1 2 3 32 32 H 1.07999 * 120.02688 * 359.95410 * 4 3 2 33 33 H 1.08006 * 119.97662 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.94194 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46871 * 329.99723 * 8 7 6 36 36 H 1.08998 * 109.47357 * 209.99801 * 8 7 6 37 37 H 0.96695 * 113.99947 * 299.99454 * 11 9 8 38 38 H 1.09001 * 109.88531 * 59.57737 * 15 14 12 39 39 H 1.09002 * 110.01276 * 298.48935 * 15 14 12 40 40 H 1.08996 * 110.71994 * 219.44139 * 16 15 14 41 41 H 1.08998 * 110.72058 * 96.16583 * 16 15 14 42 42 H 0.96698 * 113.99925 * 295.41988 * 18 17 16 43 43 H 0.97000 * 120.00086 * 179.97438 * 22 21 19 44 44 H 1.08993 * 110.35217 * 85.23570 * 27 14 12 45 45 H 1.08996 * 110.40768 * 322.88782 * 27 14 12 46 46 H 1.08004 * 120.02493 * 179.72883 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 0.0017 7 6 4.0560 2.5171 0.0017 8 6 5.5608 2.5982 0.0030 9 6 6.0689 2.6250 1.4459 10 1 5.6847 1.7576 1.9826 11 8 5.6185 3.8200 2.0873 12 6 7.5755 2.5906 1.4486 13 8 8.2035 3.5581 1.8234 14 7 8.2251 1.4847 1.0345 15 6 9.6818 1.3508 0.8885 16 6 9.9644 -0.0907 0.4153 17 6 8.6936 -0.8592 0.8646 18 8 8.7829 -1.2370 2.2399 19 6 8.4536 -2.0636 -0.0089 20 1 7.5707 -2.1136 -0.6289 21 6 9.3640 -3.0990 -0.0207 22 7 10.4391 -3.0380 0.7344 23 14 9.0704 -4.5884 -1.1091 24 1 9.6890 -4.3589 -2.4396 25 1 9.6789 -5.7884 -0.4807 26 1 7.6100 -4.8020 -1.2725 27 6 7.5917 0.2089 0.6526 28 6 3.4311 1.2848 -0.0050 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2128 2.3203 -0.0017 33 1 1.3339 4.5114 0.0000 34 1 3.7921 4.6381 0.0025 35 1 5.8761 3.5067 -0.5103 36 1 5.9719 1.7293 -0.5109 37 1 5.9233 4.6333 1.6624 38 1 10.1685 1.5282 1.8475 39 1 10.0496 2.0624 0.1492 40 1 10.8511 -0.4910 0.9066 41 1 10.0735 -0.1264 -0.6686 42 1 9.4913 -1.8673 2.4294 43 1 11.0794 -3.7666 0.7263 44 1 7.2858 0.2357 -0.3932 45 1 6.7351 0.0027 1.2942 46 1 4.0206 0.3799 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:44 Heat of formation + Delta-G solvation = -168.248487 kcal Electronic energy + Delta-G solvation = -29593.323284 eV Core-core repulsion = 25447.280997 eV Total energy + Delta-G solvation = -4146.042287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53585 -40.92582 -39.37124 -38.61752 -37.28089 -36.07016 -34.15103 -33.79995 -31.93671 -31.35631 -30.25488 -29.36913 -28.05955 -26.99042 -25.78533 -23.62635 -23.30028 -21.96267 -21.67301 -20.67503 -19.19892 -18.90995 -18.35926 -17.78930 -17.17887 -16.93329 -16.88749 -16.79973 -16.60043 -16.34423 -15.94905 -15.72520 -15.25356 -14.98075 -14.73053 -14.48835 -14.21582 -14.05638 -13.96390 -13.69119 -13.48872 -13.22010 -13.03406 -12.92938 -12.76432 -12.69310 -12.59102 -12.44764 -12.42326 -12.24987 -12.05898 -11.88384 -11.78208 -11.69535 -11.26966 -10.73705 -10.58265 -10.13378 -9.73364 -9.64749 -9.09805 -8.21697 -6.36451 0.35249 0.55096 1.44135 1.45130 1.48942 1.56803 1.94556 2.41325 2.42108 2.81380 3.04059 3.22213 3.40236 3.78326 3.82012 3.87161 3.94844 3.99004 4.12388 4.23668 4.26878 4.29641 4.32479 4.41262 4.46125 4.47328 4.59038 4.61688 4.64370 4.74205 4.79748 4.83803 4.90643 5.13335 5.15970 5.26107 5.38349 5.43674 5.51120 5.52728 5.68734 5.79527 5.87768 6.06352 6.44085 6.51630 6.61378 6.69882 7.01080 7.33813 7.42039 8.84499 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010108 B = 0.003763 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.431464 B = 7438.598039 C = 9737.907361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.146 4.146 7 C -0.041 4.041 8 C -0.101 4.101 9 C 0.118 3.882 10 H 0.117 0.883 11 O -0.540 6.540 12 C 0.495 3.505 13 O -0.581 6.581 14 N -0.602 5.602 15 C 0.112 3.888 16 C -0.127 4.127 17 C 0.231 3.769 18 O -0.595 6.595 19 C -0.555 4.555 20 H 0.067 0.933 21 C 0.034 3.966 22 N -0.912 5.912 23 Si 0.958 3.042 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.270 1.270 27 C 0.118 3.882 28 C -0.170 4.170 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.391 0.609 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.379 0.621 43 H 0.269 0.731 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 10.135 -4.790 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.065 3.935 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.164 4.164 7 C -0.041 4.041 8 C -0.139 4.139 9 C 0.055 3.945 10 H 0.135 0.865 11 O -0.346 6.346 12 C 0.284 3.716 13 O -0.462 6.462 14 N -0.335 5.335 15 C -0.011 4.011 16 C -0.166 4.166 17 C 0.191 3.809 18 O -0.404 6.404 19 C -0.593 4.593 20 H 0.085 0.915 21 C -0.167 4.167 22 N -0.552 5.552 23 Si 0.784 3.216 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.195 1.195 27 C -0.004 4.004 28 C -0.189 4.189 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.229 0.771 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.267 10.418 -4.069 20.573 hybrid contribution 1.040 -1.151 -0.670 1.690 sum -16.227 9.267 -4.739 19.278 Atomic orbital electron populations 1.23317 0.76521 1.05349 1.02290 1.86071 1.23499 1.27284 1.88816 1.19175 0.92343 0.84961 0.96979 1.21502 1.01039 0.91993 1.08599 1.21264 0.94542 0.97789 0.96346 1.21191 0.94191 0.98174 1.02805 1.19378 0.94380 0.92600 0.97787 1.21210 0.92215 1.05738 0.94745 1.21624 0.86919 0.90645 0.95327 0.86533 1.86585 1.74649 1.15587 1.57749 1.21747 0.92044 0.81366 0.76459 1.90642 1.69752 1.36399 1.49427 1.48697 1.08165 1.12682 1.63963 1.21953 0.80786 0.98406 0.99961 1.23017 1.00955 0.91969 1.00686 1.19844 0.90126 0.90889 0.80014 1.86097 1.59097 1.66680 1.28480 1.21716 1.08169 1.03684 1.25735 0.91451 1.25628 0.94235 1.00605 0.96201 1.69740 1.11534 1.33798 1.40099 0.85549 0.78438 0.78748 0.78839 1.20005 1.21214 1.19505 1.22522 0.96422 0.81003 1.00432 1.20486 0.92227 0.98548 1.07650 0.91428 0.86854 0.91696 0.83412 0.83016 0.84146 0.88080 0.88980 0.75896 0.93635 0.91151 0.91546 0.91341 0.77126 0.92118 0.88618 0.90798 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.21 10.50 -92.41 -0.97 -9.18 16 3 C 0.11 2.67 6.69 22.50 0.15 2.82 16 4 C -0.21 -4.01 9.04 22.36 0.20 -3.81 16 5 C -0.08 -1.41 10.04 22.25 0.22 -1.18 16 6 C -0.15 -2.83 9.39 22.28 0.21 -2.62 16 7 C -0.04 -0.95 4.96 -19.88 -0.10 -1.05 16 8 C -0.10 -2.34 4.94 29.85 0.15 -2.19 16 9 C 0.12 3.34 2.75 29.85 0.08 3.42 16 10 H 0.12 3.51 7.42 -2.39 -0.02 3.49 16 11 O -0.54 -14.65 12.49 -130.06 -1.62 -16.27 16 12 C 0.49 17.64 7.18 87.66 0.63 18.27 16 13 O -0.58 -23.93 16.65 15.88 0.26 -23.67 16 14 N -0.60 -22.49 3.33 -811.69 -2.70 -25.19 16 15 C 0.11 4.35 6.87 86.73 0.60 4.95 16 16 C -0.13 -5.47 5.50 31.78 0.17 -5.29 16 17 C 0.23 10.57 0.88 -10.15 -0.01 10.57 16 18 O -0.59 -29.77 13.17 -148.98 -1.96 -31.73 16 19 C -0.55 -27.14 8.25 25.60 0.21 -26.93 16 20 H 0.07 3.20 7.78 -2.91 -0.02 3.18 16 21 C 0.03 1.69 5.29 84.66 0.45 2.14 16 22 N -0.91 -46.18 10.76 21.45 0.23 -45.95 16 23 Si 0.96 39.74 29.54 68.60 2.03 41.76 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 C 0.12 4.48 4.85 86.85 0.42 4.90 16 28 C -0.17 -4.42 9.64 22.37 0.22 -4.21 16 29 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.10 1.97 8.09 -2.38 -0.02 1.95 16 36 H 0.09 2.21 5.92 -2.39 -0.01 2.19 16 37 H 0.39 8.29 8.76 -74.06 -0.65 7.64 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 40 H 0.07 3.08 7.68 -2.39 -0.02 3.06 16 41 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 42 H 0.38 19.50 7.26 -74.06 -0.54 18.96 16 43 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 44 H 0.10 3.26 7.01 -2.39 -0.02 3.24 16 45 H 0.07 2.74 7.29 -2.39 -0.02 2.73 16 46 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -63.26 377.59 -0.19 -63.45 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: -0.17 Total: 45.63 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.72 Total: 1.16 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -2.47 Total: -71.15 kcal Atomic # 8 Polarization: -76.56 SS G_CDS: -4.29 Total: -80.85 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Total: -63.26 -0.19 -63.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.801 kcal (2) G-P(sol) polarization free energy of solvation -63.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds