Wall clock time and date at job start Tue Mar 31 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35904 * 117.00108 * 2 1 4 4 C 1.38754 * 120.05493 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94804 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05324 * 359.97211 * 5 4 3 7 7 C 1.38254 * 120.11204 * 0.30184 * 6 5 4 8 8 C 1.50700 * 119.96963 * 179.70599 * 7 6 5 9 9 C 1.52996 * 109.47449 * 89.99985 * 8 7 6 10 10 H 1.09002 * 109.46978 * 54.99270 * 9 8 7 11 11 O 1.42904 * 109.47133 * 294.99054 * 9 8 7 12 12 C 1.50696 * 109.47261 * 174.99416 * 9 8 7 13 13 O 1.21277 * 120.00374 * 108.36992 * 12 9 8 14 14 N 1.34781 * 119.99876 * 288.37320 * 12 9 8 15 15 C 1.47420 * 125.65099 * 184.05825 * 14 12 9 16 16 C 1.55133 * 104.72402 * 155.81635 * 15 14 12 17 17 C 1.55159 * 101.48315 * 37.30048 * 16 15 14 18 18 O 1.42900 * 110.72205 * 82.69389 * 17 16 15 19 19 C 1.50696 * 110.86706 * 205.89856 * 17 16 15 20 20 H 1.08004 * 120.00521 * 20.04021 * 19 17 16 21 21 C 1.37878 * 119.99816 * 200.03312 * 19 17 16 22 22 N 1.31522 * 120.00017 * 175.36717 * 21 19 17 23 23 Si 1.86803 * 120.00122 * 355.37228 * 21 19 17 24 24 H 1.48498 * 109.47390 * 87.96173 * 23 21 19 25 25 H 1.48500 * 109.47266 * 207.96248 * 23 21 19 26 26 H 1.48507 * 109.46918 * 327.96115 * 23 21 19 27 27 C 1.47028 * 125.64550 * 4.36917 * 14 12 9 28 28 C 1.38170 * 120.05103 * 359.44488 * 7 6 5 29 29 H 1.09000 * 109.47292 * 299.99480 * 1 2 3 30 30 H 1.08996 * 109.47550 * 59.99670 * 1 2 3 31 31 H 1.09001 * 109.47195 * 179.97438 * 1 2 3 32 32 H 1.08006 * 120.02805 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.97513 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94389 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46521 * 209.99667 * 8 7 6 36 36 H 1.08999 * 109.46891 * 329.99383 * 8 7 6 37 37 H 0.96694 * 113.99801 * 300.00301 * 11 9 8 38 38 H 1.09003 * 110.37013 * 274.74643 * 15 14 12 39 39 H 1.09007 * 110.36834 * 37.06957 * 15 14 12 40 40 H 1.08997 * 111.19234 * 279.19285 * 16 15 14 41 41 H 1.09002 * 110.90137 * 155.27614 * 16 15 14 42 42 H 0.96696 * 113.99890 * 61.25627 * 18 17 16 43 43 H 0.97003 * 119.99384 * 180.02562 * 22 21 19 44 44 H 1.08995 * 109.88093 * 300.43405 * 27 14 12 45 45 H 1.08998 * 109.88705 * 61.44905 * 27 14 12 46 46 H 1.07997 * 120.02434 * 180.25482 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 4.0559 2.5171 -0.0067 8 6 5.5607 2.5983 -0.0140 9 6 6.0771 2.6226 1.4260 10 1 5.6910 1.7575 1.9651 11 8 5.6372 3.8203 2.0697 12 6 7.5835 2.5798 1.4203 13 8 8.2194 3.5674 1.7219 14 7 8.2240 1.4438 1.0799 15 6 9.6833 1.2372 1.1130 16 6 9.8612 -0.2973 1.2551 17 6 8.7040 -0.8260 0.3669 18 8 9.0896 -0.8421 -1.0091 19 6 8.2688 -2.1981 0.8128 20 1 8.5041 -2.5420 1.8092 21 6 7.5702 -3.0144 -0.0513 22 7 7.2698 -4.2445 0.3044 23 14 7.0505 -2.3734 -1.7272 24 1 8.1395 -2.6124 -2.7081 25 1 5.8223 -3.0816 -2.1689 26 1 6.7766 -0.9166 -1.6368 27 6 7.5834 0.2074 0.6079 28 6 3.4310 1.2848 -0.0009 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0005 33 1 1.3339 4.5114 0.0000 34 1 3.7921 4.6382 -0.0005 35 1 5.9689 1.7302 -0.5317 36 1 5.8730 3.5077 -0.5274 37 1 5.9441 4.6317 1.6427 38 1 10.1375 1.5900 0.1870 39 1 10.1197 1.7503 1.9701 40 1 9.7353 -0.6144 2.2903 41 1 10.8287 -0.6143 0.8658 42 1 9.8441 -1.4161 -1.1994 43 1 6.7786 -4.8188 -0.3037 44 1 6.8928 -0.1644 1.3647 45 1 7.0468 0.3992 -0.3213 46 1 4.0206 0.3800 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:48 Heat of formation + Delta-G solvation = -164.305453 kcal Electronic energy + Delta-G solvation = -30064.941429 eV Core-core repulsion = 25919.070125 eV Total energy + Delta-G solvation = -4145.871304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62761 -40.99678 -39.61208 -38.70746 -37.35244 -36.33318 -34.45853 -33.87810 -32.11444 -31.42890 -30.44081 -29.43906 -28.10919 -27.04421 -25.85069 -23.81756 -23.39327 -22.00870 -21.65734 -20.83259 -19.35550 -19.04094 -18.51484 -17.84021 -17.22526 -17.12861 -16.93545 -16.81404 -16.69346 -16.41376 -16.37570 -15.73887 -15.33406 -15.05998 -14.74753 -14.56080 -14.52131 -14.24529 -14.16164 -13.72772 -13.63629 -13.52980 -13.26135 -13.01945 -12.88540 -12.76449 -12.54486 -12.47791 -12.35672 -12.12518 -12.09296 -11.99516 -11.81894 -11.73140 -11.21344 -10.81617 -10.64961 -10.33709 -9.80390 -9.67444 -9.14825 -8.34978 -6.49795 0.29831 0.49953 1.38724 1.47080 1.51889 1.69288 1.89725 2.37588 2.40691 2.76144 2.97332 3.17736 3.30462 3.47246 3.75317 3.81179 3.86340 3.92831 3.99083 4.09624 4.20533 4.22326 4.25897 4.33239 4.37549 4.41508 4.49212 4.55436 4.59645 4.70109 4.74781 4.80158 4.85829 4.94276 5.07424 5.14673 5.19792 5.31767 5.33705 5.47767 5.48663 5.63089 5.84057 6.06713 6.37463 6.47600 6.57563 6.60151 6.94816 7.00604 7.30209 8.77673 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.004932 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.545649 B = 5675.839167 C = 8025.369416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.347 6.347 3 C 0.111 3.889 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.142 4.142 7 C -0.042 4.042 8 C -0.107 4.107 9 C 0.115 3.885 10 H 0.117 0.883 11 O -0.537 6.537 12 C 0.499 3.501 13 O -0.573 6.573 14 N -0.608 5.608 15 C 0.109 3.891 16 C -0.139 4.139 17 C 0.217 3.783 18 O -0.565 6.565 19 C -0.547 4.547 20 H 0.048 0.952 21 C 0.033 3.967 22 N -0.932 5.932 23 Si 0.989 3.011 24 H -0.278 1.278 25 H -0.337 1.337 26 H -0.253 1.253 27 C 0.106 3.894 28 C -0.178 4.178 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.387 0.613 43 H 0.267 0.733 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.947 15.155 -3.148 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.261 6.261 3 C 0.066 3.934 4 C -0.229 4.229 5 C -0.096 4.096 6 C -0.160 4.160 7 C -0.042 4.042 8 C -0.145 4.145 9 C 0.052 3.948 10 H 0.134 0.866 11 O -0.343 6.343 12 C 0.288 3.712 13 O -0.454 6.454 14 N -0.342 5.342 15 C -0.013 4.013 16 C -0.177 4.177 17 C 0.177 3.823 18 O -0.375 6.375 19 C -0.585 4.585 20 H 0.066 0.934 21 C -0.168 4.168 22 N -0.569 5.569 23 Si 0.821 3.179 24 H -0.205 1.205 25 H -0.269 1.269 26 H -0.178 1.178 27 C -0.016 4.016 28 C -0.196 4.196 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.242 0.758 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.237 0.763 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.421 15.390 -2.630 18.771 hybrid contribution 0.327 -0.774 -0.798 1.159 sum -10.094 14.616 -3.428 18.090 Atomic orbital electron populations 1.23332 0.76356 1.05347 1.02471 1.86087 1.23716 1.27488 1.88807 1.19181 0.92192 0.85104 0.96963 1.21518 1.01095 0.91824 1.08452 1.21298 0.94484 0.97788 0.95996 1.21195 0.94197 0.97995 1.02661 1.19386 0.94398 0.92566 0.97896 1.21270 0.92372 1.05385 0.95437 1.21614 0.87620 0.90730 0.94851 0.86588 1.86589 1.75150 1.15449 1.57117 1.21560 0.91807 0.81518 0.76332 1.90644 1.69055 1.34640 1.51034 1.48767 1.08916 1.12621 1.63897 1.22345 0.80251 0.96673 1.02024 1.23339 1.00252 0.93019 1.01074 1.19865 0.91067 0.91890 0.79491 1.86095 1.53557 1.70440 1.27385 1.21417 1.37379 0.98860 1.00799 0.93407 1.25793 0.94142 0.94266 1.02582 1.70070 1.39915 1.08222 1.38712 0.85078 0.75207 0.78463 0.79106 1.20474 1.26926 1.17828 1.22694 0.96741 0.83023 0.99145 1.20467 0.92477 0.98440 1.08252 0.91365 0.91269 0.87037 0.83130 0.82528 0.83708 0.89994 0.87781 0.75806 0.90560 0.90723 0.91151 0.88102 0.76283 0.92432 0.90782 0.90839 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.35 -9.72 10.50 -92.47 -0.97 -10.69 16 3 C 0.11 3.05 6.69 22.50 0.15 3.20 16 4 C -0.21 -4.37 9.04 22.37 0.20 -4.17 16 5 C -0.08 -1.43 10.04 22.25 0.22 -1.21 16 6 C -0.14 -2.96 9.40 22.28 0.21 -2.75 16 7 C -0.04 -1.10 4.97 -19.88 -0.10 -1.19 16 8 C -0.11 -2.75 4.94 29.85 0.15 -2.60 16 9 C 0.11 3.29 2.77 29.85 0.08 3.37 16 10 H 0.12 3.56 7.88 -2.39 -0.02 3.54 16 11 O -0.54 -14.29 12.54 -130.20 -1.63 -15.92 16 12 C 0.50 16.81 7.17 87.66 0.63 17.43 16 13 O -0.57 -21.66 16.59 15.76 0.26 -21.40 16 14 N -0.61 -21.06 3.32 -811.33 -2.70 -23.76 16 15 C 0.11 3.48 6.89 86.93 0.60 4.08 16 16 C -0.14 -4.66 6.26 32.07 0.20 -4.46 16 17 C 0.22 8.72 0.68 -10.35 -0.01 8.72 16 18 O -0.57 -21.38 8.79 -148.98 -1.31 -22.69 16 19 C -0.55 -27.68 8.71 25.60 0.22 -27.45 16 20 H 0.05 2.71 7.98 -2.91 -0.02 2.69 16 21 C 0.03 1.77 5.47 84.65 0.46 2.23 16 22 N -0.93 -54.75 13.96 21.45 0.30 -54.45 16 23 Si 0.99 45.53 24.97 68.60 1.71 47.24 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.34 -16.44 7.11 99.48 0.71 -15.73 16 26 H -0.25 -10.95 5.06 99.48 0.50 -10.45 16 27 C 0.11 4.04 4.84 86.73 0.42 4.46 16 28 C -0.18 -5.37 9.64 22.36 0.22 -5.16 16 29 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 30 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.15 2.23 6.30 -2.91 -0.02 2.21 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.08 2.38 5.38 -2.38 -0.01 2.36 16 36 H 0.10 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.39 8.05 8.72 -74.06 -0.65 7.41 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.31 8.08 -2.38 -0.02 2.29 16 40 H 0.07 2.50 7.99 -2.39 -0.02 2.48 16 41 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.39 12.49 9.05 -74.06 -0.67 11.81 16 43 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.07 2.95 7.64 -2.39 -0.02 2.93 16 45 H 0.07 2.80 4.14 -2.39 -0.01 2.79 16 46 H 0.11 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.26 370.72 -0.06 -70.32 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: -0.49 Total: 35.42 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.77 Total: -4.07 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.40 Total: -78.21 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -3.65 Total: -70.70 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.71 Total: 47.24 kcal Total: -70.26 -0.06 -70.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.985 kcal (2) G-P(sol) polarization free energy of solvation -70.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds