Wall clock time and date at job start Tue Mar 31 2020 18:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99657 * 2 1 4 4 C 1.38755 * 120.05599 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94163 * 179.74891 * 4 3 2 6 6 C 1.38285 * 120.05549 * 0.54448 * 5 4 3 7 7 C 1.38247 * 120.11130 * 359.44969 * 6 5 4 8 8 C 1.50705 * 119.97192 * 180.29690 * 7 6 5 9 9 C 1.53002 * 109.46910 * 90.00107 * 8 7 6 10 10 H 1.09000 * 109.46943 * 304.99943 * 9 8 7 11 11 O 1.42903 * 109.46874 * 65.00169 * 9 8 7 12 12 C 1.50698 * 109.46667 * 184.99763 * 9 8 7 13 13 O 1.21282 * 120.00407 * 244.99786 * 12 9 8 14 14 N 1.34779 * 120.00114 * 65.00889 * 12 9 8 15 15 C 1.47432 * 125.64484 * 359.68100 * 14 12 9 16 16 C 1.55131 * 104.71844 * 155.82342 * 15 14 12 17 17 C 1.55156 * 101.48595 * 37.29492 * 16 15 14 18 18 O 1.42901 * 110.71939 * 82.69568 * 17 16 15 19 19 C 1.50696 * 110.87134 * 205.89613 * 17 16 15 20 20 H 1.08004 * 119.99991 * 113.61058 * 19 17 16 21 21 C 1.37878 * 120.00328 * 293.61364 * 19 17 16 22 22 N 1.31522 * 119.99545 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 120.00251 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47476 * 89.99946 * 23 21 19 25 25 H 1.48504 * 109.47160 * 209.99700 * 23 21 19 26 26 H 1.48500 * 109.47266 * 329.99364 * 23 21 19 27 27 C 1.47012 * 125.64990 * 179.97438 * 14 12 9 28 28 C 1.38162 * 120.05352 * 0.27883 * 7 6 5 29 29 H 1.08999 * 109.47109 * 60.00066 * 1 2 3 30 30 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47373 * 299.99522 * 1 2 3 32 32 H 1.08006 * 120.02644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97084 * 180.27743 * 5 4 3 34 34 H 1.08002 * 119.94679 * 179.73091 * 6 5 4 35 35 H 1.08997 * 109.47089 * 210.00460 * 8 7 6 36 36 H 1.08996 * 109.47083 * 330.00253 * 8 7 6 37 37 H 0.96694 * 113.99931 * 59.99978 * 11 9 8 38 38 H 1.09002 * 110.36730 * 274.75295 * 15 14 12 39 39 H 1.08999 * 110.36205 * 37.07579 * 15 14 12 40 40 H 1.09001 * 111.18948 * 279.19094 * 16 15 14 41 41 H 1.08998 * 110.90232 * 155.27507 * 16 15 14 42 42 H 0.96707 * 114.00187 * 66.47435 * 18 17 16 43 43 H 0.97003 * 119.99316 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.88475 * 300.43591 * 27 14 12 45 45 H 1.09003 * 109.88371 * 61.44482 * 27 14 12 46 46 H 1.08007 * 120.02848 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0047 6 6 3.3017 3.6759 -0.0009 7 6 4.0558 2.5172 -0.0002 8 6 5.5607 2.5984 0.0004 9 6 6.0693 2.6262 1.4432 10 1 5.5897 3.4435 1.9818 11 8 5.7572 1.3866 2.0822 12 6 7.5623 2.8306 1.4455 13 8 8.2934 1.9575 1.8629 14 7 8.0853 3.9839 0.9841 15 6 7.3169 5.1207 0.4448 16 6 8.2396 6.3513 0.6465 17 6 9.6362 5.7414 0.3547 18 8 9.8865 5.7012 -1.0516 19 6 10.7181 6.5133 1.0650 20 1 11.2826 6.0462 1.8585 21 6 10.9875 7.8159 0.7019 22 7 10.3004 8.3845 -0.2647 23 14 12.3291 8.7724 1.5819 24 1 13.6222 8.5714 0.8798 25 1 11.9866 10.2174 1.5841 26 1 12.4452 8.2891 2.9812 27 6 9.5168 4.3142 0.9295 28 6 3.4310 1.2850 0.0002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2126 2.3203 -0.0005 33 1 1.3338 4.5114 0.0088 34 1 3.7921 4.6382 -0.0012 35 1 5.9717 1.7292 -0.5131 36 1 5.8758 3.5065 -0.5134 37 1 6.1518 0.6139 1.6554 38 1 7.1085 4.9693 -0.6144 39 1 6.3880 5.2483 1.0006 40 1 8.1819 6.7237 1.6693 41 1 7.9999 7.1384 -0.0684 42 1 9.9698 6.5732 -1.4615 43 1 10.4897 9.3011 -0.5198 44 1 9.9434 4.2814 1.9321 45 1 10.0361 3.6071 0.2826 46 1 4.0206 0.3800 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592850380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:54 Heat of formation + Delta-G solvation = -146.702451 kcal Electronic energy + Delta-G solvation = -29221.387366 eV Core-core repulsion = 25076.279385 eV Total energy + Delta-G solvation = -4145.107981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47690 -39.84475 -38.08096 -37.48991 -36.10067 -34.50850 -32.77537 -32.20232 -30.83225 -30.07213 -28.95010 -28.08218 -27.49576 -25.48937 -24.19570 -22.71187 -22.29888 -21.10586 -19.99297 -19.16123 -18.02808 -17.49454 -17.05215 -16.55760 -16.33527 -16.08557 -15.96016 -15.59118 -15.07021 -14.81208 -14.70247 -14.27033 -14.12199 -13.86860 -13.65579 -13.36337 -13.05169 -12.84096 -12.37644 -12.25689 -12.20556 -11.95735 -11.94390 -11.72248 -11.46693 -11.39447 -11.36223 -11.30846 -11.01588 -10.94714 -10.74117 -10.60456 -10.51840 -10.18382 -9.50887 -9.31156 -8.88543 -8.70969 -8.35124 -8.28323 -8.12095 -6.35249 -4.42291 1.14027 1.30816 2.85936 3.03498 3.17161 3.24680 3.27510 3.37664 3.61626 4.22494 4.25976 4.54133 4.59332 4.76537 4.79547 4.83742 4.89148 4.92363 4.93045 5.03811 5.14993 5.20137 5.32063 5.36788 5.44754 5.59055 5.66503 5.77958 5.81463 5.87570 5.96056 6.11334 6.13354 6.27294 6.38110 6.46304 6.58595 6.60833 6.81175 6.87689 7.19715 7.22677 7.26850 7.52475 7.68266 7.93870 7.99081 8.46583 8.60227 9.26065 9.39143 10.72603 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002492 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.198372 B =11234.062121 C =11945.868267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.079 4.079 6 C -0.152 4.152 7 C -0.033 4.033 8 C -0.116 4.116 9 C 0.106 3.894 10 H 0.122 0.878 11 O -0.534 6.534 12 C 0.492 3.508 13 O -0.547 6.547 14 N -0.603 5.603 15 C 0.091 3.909 16 C -0.138 4.138 17 C 0.248 3.752 18 O -0.587 6.587 19 C -0.535 4.535 20 H 0.065 0.935 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.120 3.880 28 C -0.134 4.134 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.380 0.620 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.387 0.613 43 H 0.269 0.731 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.253 -8.608 -1.828 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.170 4.170 7 C -0.033 4.033 8 C -0.154 4.154 9 C 0.043 3.957 10 H 0.140 0.860 11 O -0.339 6.339 12 C 0.280 3.720 13 O -0.425 6.425 14 N -0.336 5.336 15 C -0.031 4.031 16 C -0.176 4.176 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.573 4.573 20 H 0.083 0.917 21 C -0.130 4.130 22 N -0.538 5.538 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.001 4.001 28 C -0.153 4.153 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.239 0.761 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.195 -9.430 -1.165 21.418 hybrid contribution 0.681 1.165 -0.057 1.350 sum -18.514 -8.265 -1.222 20.312 Atomic orbital electron populations 1.23033 0.78563 1.03820 1.01269 1.86073 1.21239 1.27074 1.88837 1.18985 0.92282 0.84077 0.96672 1.21201 0.99834 0.92506 1.09661 1.20897 0.94536 0.96940 0.97371 1.21021 0.93808 0.98165 1.04024 1.19422 0.94671 0.92383 0.96826 1.21390 0.91764 1.05438 0.96781 1.21724 0.91001 0.89385 0.93603 0.86038 1.86592 1.74812 1.15222 1.57226 1.21076 0.91192 0.81487 0.78285 1.90684 1.61618 1.42453 1.47789 1.48703 1.09471 1.15307 1.60160 1.22662 0.95163 0.87392 0.97874 1.23377 0.96785 0.95095 1.02371 1.19425 0.91333 0.88138 0.80305 1.86095 1.94729 1.36207 1.22707 1.21541 1.18965 0.97479 1.19314 0.91688 1.24990 0.96044 0.97228 0.94773 1.69570 1.40477 1.14601 1.29147 0.86393 0.81664 0.78719 0.80096 1.20357 1.21016 1.19703 1.22123 0.79352 0.97852 1.00799 1.20248 0.91167 0.98197 1.05664 0.92755 0.88340 0.92695 0.85748 0.85737 0.85542 0.89752 0.88319 0.77158 0.91453 0.92029 0.91295 0.89524 0.76126 0.92058 0.90962 0.91985 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.38 10.50 -19.44 -0.20 -3.59 16 3 C 0.12 1.40 6.69 -39.22 -0.26 1.14 16 4 C -0.21 -2.08 9.04 -39.43 -0.36 -2.44 16 5 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 6 C -0.15 -1.60 9.70 -39.56 -0.38 -1.98 16 7 C -0.03 -0.37 4.97 -104.64 -0.52 -0.89 16 8 C -0.12 -1.35 4.92 -27.88 -0.14 -1.49 16 9 C 0.11 1.46 2.72 -27.88 -0.08 1.38 16 10 H 0.12 1.59 7.62 -51.93 -0.40 1.20 16 11 O -0.53 -7.53 12.49 -55.09 -0.69 -8.22 16 12 C 0.49 8.81 7.23 -10.98 -0.08 8.73 16 13 O -0.55 -11.64 16.65 -14.30 -0.24 -11.88 16 14 N -0.60 -11.22 3.32 -170.38 -0.57 -11.79 16 15 C 0.09 1.51 5.35 -2.40 -0.01 1.50 16 16 C -0.14 -2.79 5.69 -24.46 -0.14 -2.93 16 17 C 0.25 5.77 0.85 -89.94 -0.08 5.69 16 18 O -0.59 -14.28 13.09 -35.23 -0.46 -14.74 16 19 C -0.53 -13.61 8.22 -34.44 -0.28 -13.90 16 20 H 0.06 1.67 7.53 -52.48 -0.40 1.28 16 21 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 22 N -0.90 -22.37 10.71 55.43 0.59 -21.78 16 23 Si 0.90 19.88 29.54 -169.99 -5.02 14.85 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.12 2.63 6.21 -3.07 -0.02 2.61 16 28 C -0.13 -1.56 9.34 -39.44 -0.37 -1.93 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.12 0.92 6.30 -52.48 -0.33 0.59 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.10 1.14 5.39 -51.93 -0.28 0.86 16 37 H 0.38 4.49 8.79 45.56 0.40 4.89 16 38 H 0.07 1.05 7.11 -51.93 -0.37 0.69 16 39 H 0.06 0.83 7.33 -51.93 -0.38 0.45 16 40 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.09 1.82 7.78 -51.93 -0.40 1.41 16 42 H 0.39 9.51 6.98 45.56 0.32 9.83 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.07 1.63 7.63 -51.93 -0.40 1.23 16 45 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 46 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -30.07 376.28 -8.24 -38.31 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -5.11 Total: 15.94 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.21 Total: -2.79 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.03 Total: -33.57 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -1.59 Total: -38.42 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.07 -8.24 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.392 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds