Wall clock time and date at job start Tue Mar 31 2020 18:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99657 * 2 1 4 4 C 1.38755 * 120.05599 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94163 * 179.74891 * 4 3 2 6 6 C 1.38285 * 120.05549 * 0.54448 * 5 4 3 7 7 C 1.38247 * 120.11130 * 359.44969 * 6 5 4 8 8 C 1.50705 * 119.97192 * 180.29690 * 7 6 5 9 9 C 1.53002 * 109.46910 * 90.00107 * 8 7 6 10 10 H 1.09000 * 109.46943 * 304.99943 * 9 8 7 11 11 O 1.42903 * 109.46874 * 65.00169 * 9 8 7 12 12 C 1.50698 * 109.46667 * 184.99763 * 9 8 7 13 13 O 1.21282 * 120.00407 * 244.99786 * 12 9 8 14 14 N 1.34779 * 120.00114 * 65.00889 * 12 9 8 15 15 C 1.47432 * 125.64484 * 359.68100 * 14 12 9 16 16 C 1.55131 * 104.71844 * 155.82342 * 15 14 12 17 17 C 1.55156 * 101.48595 * 37.29492 * 16 15 14 18 18 O 1.42901 * 110.71939 * 82.69568 * 17 16 15 19 19 C 1.50696 * 110.87134 * 205.89613 * 17 16 15 20 20 H 1.08004 * 119.99991 * 113.61058 * 19 17 16 21 21 C 1.37878 * 120.00328 * 293.61364 * 19 17 16 22 22 N 1.31522 * 119.99545 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 120.00251 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47476 * 89.99946 * 23 21 19 25 25 H 1.48504 * 109.47160 * 209.99700 * 23 21 19 26 26 H 1.48500 * 109.47266 * 329.99364 * 23 21 19 27 27 C 1.47012 * 125.64990 * 179.97438 * 14 12 9 28 28 C 1.38162 * 120.05352 * 0.27883 * 7 6 5 29 29 H 1.08999 * 109.47109 * 60.00066 * 1 2 3 30 30 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47373 * 299.99522 * 1 2 3 32 32 H 1.08006 * 120.02644 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.97084 * 180.27743 * 5 4 3 34 34 H 1.08002 * 119.94679 * 179.73091 * 6 5 4 35 35 H 1.08997 * 109.47089 * 210.00460 * 8 7 6 36 36 H 1.08996 * 109.47083 * 330.00253 * 8 7 6 37 37 H 0.96694 * 113.99931 * 59.99978 * 11 9 8 38 38 H 1.09002 * 110.36730 * 274.75295 * 15 14 12 39 39 H 1.08999 * 110.36205 * 37.07579 * 15 14 12 40 40 H 1.09001 * 111.18948 * 279.19094 * 16 15 14 41 41 H 1.08998 * 110.90232 * 155.27507 * 16 15 14 42 42 H 0.96707 * 114.00187 * 66.47435 * 18 17 16 43 43 H 0.97003 * 119.99316 * 179.97438 * 22 21 19 44 44 H 1.09000 * 109.88475 * 300.43591 * 27 14 12 45 45 H 1.09003 * 109.88371 * 61.44482 * 27 14 12 46 46 H 1.08007 * 120.02848 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 0.0047 6 6 3.3017 3.6759 -0.0009 7 6 4.0558 2.5172 -0.0002 8 6 5.5607 2.5984 0.0004 9 6 6.0693 2.6262 1.4432 10 1 5.5897 3.4435 1.9818 11 8 5.7572 1.3866 2.0822 12 6 7.5623 2.8306 1.4455 13 8 8.2934 1.9575 1.8629 14 7 8.0853 3.9839 0.9841 15 6 7.3169 5.1207 0.4448 16 6 8.2396 6.3513 0.6465 17 6 9.6362 5.7414 0.3547 18 8 9.8865 5.7012 -1.0516 19 6 10.7181 6.5133 1.0650 20 1 11.2826 6.0462 1.8585 21 6 10.9875 7.8159 0.7019 22 7 10.3004 8.3845 -0.2647 23 14 12.3291 8.7724 1.5819 24 1 13.6222 8.5714 0.8798 25 1 11.9866 10.2174 1.5841 26 1 12.4452 8.2891 2.9812 27 6 9.5168 4.3142 0.9295 28 6 3.4310 1.2850 0.0002 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2126 2.3203 -0.0005 33 1 1.3338 4.5114 0.0088 34 1 3.7921 4.6382 -0.0012 35 1 5.9717 1.7292 -0.5131 36 1 5.8758 3.5065 -0.5134 37 1 6.1518 0.6139 1.6554 38 1 7.1085 4.9693 -0.6144 39 1 6.3880 5.2483 1.0006 40 1 8.1819 6.7237 1.6693 41 1 7.9999 7.1384 -0.0684 42 1 9.9698 6.5732 -1.4615 43 1 10.4897 9.3011 -0.5198 44 1 9.9434 4.2814 1.9321 45 1 10.0361 3.6071 0.2826 46 1 4.0206 0.3800 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592850380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:53 Heat of formation + Delta-G solvation = -167.855247 kcal Electronic energy + Delta-G solvation = -29222.304620 eV Core-core repulsion = 25076.279385 eV Total energy + Delta-G solvation = -4146.025235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54873 -40.92188 -39.37195 -38.61586 -37.28473 -36.20584 -34.14001 -33.71374 -31.81407 -31.35503 -30.30445 -29.42996 -28.11063 -27.06062 -25.50960 -23.71367 -23.45488 -21.91481 -21.65248 -20.63781 -19.27809 -18.83607 -18.46724 -17.68788 -17.18642 -16.96545 -16.96211 -16.81526 -16.60228 -16.08716 -16.00721 -15.90681 -15.27377 -14.95125 -14.71396 -14.56446 -14.19144 -13.88548 -13.84667 -13.63374 -13.38988 -13.30880 -13.22773 -12.88680 -12.87706 -12.71120 -12.60552 -12.44250 -12.36427 -12.26926 -12.07181 -11.97156 -11.73492 -11.69288 -11.28552 -10.73371 -10.57362 -10.13316 -9.74373 -9.65066 -9.09832 -8.26060 -6.39330 0.36565 0.55037 1.41165 1.44885 1.46401 1.52923 1.92524 2.39205 2.41420 2.81582 2.99508 3.20722 3.42209 3.81782 3.86407 3.88873 3.94992 3.98012 4.00842 4.22261 4.28037 4.33968 4.39598 4.41488 4.45563 4.50470 4.57144 4.61462 4.65637 4.74935 4.82583 4.89290 4.90941 5.13857 5.18104 5.21562 5.38993 5.46432 5.53862 5.54469 5.68527 5.77026 5.87047 6.05935 6.42841 6.50944 6.59778 6.64389 7.01978 7.31498 7.45872 8.80185 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002492 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.198372 B =11234.062121 C =11945.868267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.214 4.214 5 C -0.082 4.082 6 C -0.160 4.160 7 C -0.042 4.042 8 C -0.105 4.105 9 C 0.120 3.880 10 H 0.137 0.863 11 O -0.542 6.542 12 C 0.490 3.510 13 O -0.586 6.586 14 N -0.603 5.603 15 C 0.100 3.900 16 C -0.130 4.130 17 C 0.236 3.764 18 O -0.594 6.594 19 C -0.563 4.563 20 H 0.050 0.950 21 C 0.038 3.962 22 N -0.906 5.906 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.126 3.874 28 C -0.153 4.153 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.388 0.612 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.383 0.617 43 H 0.273 0.727 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 -7.808 -1.949 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.065 3.935 4 C -0.233 4.233 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.042 4.042 8 C -0.143 4.143 9 C 0.058 3.942 10 H 0.154 0.846 11 O -0.348 6.348 12 C 0.279 3.721 13 O -0.468 6.468 14 N -0.336 5.336 15 C -0.021 4.021 16 C -0.168 4.168 17 C 0.196 3.804 18 O -0.404 6.404 19 C -0.601 4.601 20 H 0.068 0.932 21 C -0.163 4.163 22 N -0.545 5.545 23 Si 0.783 3.217 24 H -0.205 1.205 25 H -0.201 1.201 26 H -0.201 1.201 27 C 0.003 3.997 28 C -0.172 4.172 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.238 0.762 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.235 0.765 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.663 -8.632 -1.298 23.356 hybrid contribution 1.409 0.859 -0.028 1.651 sum -20.254 -7.773 -1.326 21.735 Atomic orbital electron populations 1.23313 0.76571 1.05402 1.02201 1.86043 1.23409 1.27153 1.88859 1.19182 0.92429 0.84880 0.97042 1.21509 1.01036 0.92094 1.08612 1.21248 0.94522 0.97856 0.96325 1.21288 0.94398 0.98428 1.03690 1.19369 0.94183 0.92744 0.97874 1.21275 0.92263 1.05752 0.95025 1.21723 0.87446 0.89735 0.95313 0.84568 1.86571 1.74673 1.15717 1.57844 1.21961 0.92899 0.80379 0.76813 1.90662 1.63081 1.43659 1.49356 1.48735 1.08133 1.16318 1.60460 1.22740 0.95379 0.84532 0.99483 1.23163 0.95799 0.96369 1.01506 1.19559 0.92555 0.88799 0.79482 1.86080 1.94967 1.35974 1.23382 1.21750 1.20232 0.98370 1.19743 0.93170 1.25550 0.97624 0.97723 0.95403 1.69614 1.40809 1.14831 1.29249 0.85571 0.79396 0.77874 0.78840 1.20487 1.20084 1.20079 1.21823 0.81619 0.96933 0.99325 1.20377 0.91829 0.98389 1.06584 0.91637 0.86617 0.91830 0.83556 0.83218 0.83976 0.89713 0.87800 0.76172 0.89942 0.87858 0.92184 0.90168 0.76531 0.91720 0.92557 0.93753 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.83 10.50 -92.48 -0.97 -7.80 16 3 C 0.11 2.31 6.69 22.51 0.15 2.46 16 4 C -0.21 -3.62 9.04 22.37 0.20 -3.42 16 5 C -0.08 -1.31 10.04 22.25 0.22 -1.08 16 6 C -0.16 -2.88 9.70 22.28 0.22 -2.66 16 7 C -0.04 -0.86 4.97 -19.88 -0.10 -0.96 16 8 C -0.11 -2.25 4.92 29.85 0.15 -2.10 16 9 C 0.12 3.10 2.72 29.85 0.08 3.18 16 10 H 0.14 3.15 7.62 -2.39 -0.02 3.13 16 11 O -0.54 -14.68 12.49 -129.99 -1.62 -16.31 16 12 C 0.49 17.19 7.23 87.66 0.63 17.83 16 13 O -0.59 -25.22 16.65 15.95 0.27 -24.95 16 14 N -0.60 -22.04 3.32 -811.35 -2.70 -24.73 16 15 C 0.10 3.07 5.35 86.93 0.47 3.54 16 16 C -0.13 -5.15 5.69 32.06 0.18 -4.97 16 17 C 0.24 11.08 0.85 -10.35 -0.01 11.08 16 18 O -0.59 -29.16 13.09 -148.98 -1.95 -31.10 16 19 C -0.56 -29.18 8.22 25.60 0.21 -28.97 16 20 H 0.05 2.67 7.53 -2.91 -0.02 2.65 16 21 C 0.04 1.92 5.28 84.65 0.45 2.37 16 22 N -0.91 -44.76 10.71 21.45 0.23 -44.53 16 23 Si 0.96 40.69 29.54 68.60 2.03 42.72 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.13 5.64 6.21 86.73 0.54 6.18 16 28 C -0.15 -3.41 9.34 22.36 0.21 -3.20 16 29 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 32 H 0.15 1.71 6.30 -2.91 -0.02 1.69 16 33 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.08 1.80 8.08 -2.39 -0.02 1.78 16 36 H 0.10 2.11 5.39 -2.39 -0.01 2.10 16 37 H 0.39 9.00 8.79 -74.06 -0.65 8.35 16 38 H 0.08 2.34 7.11 -2.39 -0.02 2.32 16 39 H 0.10 2.36 7.33 -2.39 -0.02 2.34 16 40 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 41 H 0.08 3.28 7.78 -2.39 -0.02 3.26 16 42 H 0.38 19.01 6.98 -74.05 -0.52 18.49 16 43 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 44 H 0.06 2.65 7.63 -2.39 -0.02 2.63 16 45 H 0.04 2.09 8.07 -2.39 -0.02 2.07 16 46 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -65.34 376.28 -0.15 -65.49 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.14 Total: 40.64 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.71 Total: 0.58 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -2.47 Total: -69.27 kcal Atomic # 8 Polarization: -75.89 SS G_CDS: -4.28 Total: -80.16 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -65.34 -0.15 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592850380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.364 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds