Wall clock time and date at job start Tue Mar 31 2020 18:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99529 * 2 1 4 4 C 1.38797 * 120.02590 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.04825 * 180.02562 * 4 3 2 6 6 C 1.38189 * 120.11553 * 0.02738 * 5 4 3 7 7 C 1.38757 * 120.05209 * 359.97045 * 6 5 4 8 8 O 1.35893 * 120.02478 * 179.97438 * 7 6 5 9 9 C 1.42891 * 117.00521 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.47727 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47453 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00071 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99926 * 179.97438 * 11 10 9 14 14 C 1.47016 * 125.65127 * 359.97029 * 13 11 10 15 15 C 1.54317 * 107.27544 * 178.98694 * 14 13 11 16 16 C 1.55161 * 102.94040 * 337.81168 * 15 14 13 17 17 O 1.42903 * 111.00309 * 277.38547 * 16 15 14 18 18 C 1.50696 * 111.00179 * 153.57607 * 16 15 14 19 19 H 1.08003 * 119.99607 * 243.51886 * 18 16 15 20 20 C 1.37879 * 120.00584 * 63.24935 * 18 16 15 21 21 N 1.31521 * 119.99465 * 354.29255 * 20 18 16 22 22 Si 1.86794 * 120.00270 * 174.29525 * 20 18 16 23 23 H 1.48502 * 109.46911 * 94.98366 * 22 20 18 24 24 H 1.48502 * 109.47227 * 214.97830 * 22 20 18 25 25 H 1.48496 * 109.47481 * 334.98199 * 22 20 18 26 26 C 1.47426 * 125.64631 * 180.02562 * 13 11 10 27 27 C 1.38606 * 120.02645 * 180.27695 * 3 2 1 28 28 H 1.08992 * 109.47700 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.47152 * 60.00644 * 1 2 3 30 30 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.97587 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.94178 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.97870 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47511 * 59.99570 * 9 8 7 35 35 H 1.09004 * 109.47271 * 299.99794 * 9 8 7 36 36 H 1.08998 * 109.47023 * 59.99214 * 10 9 8 37 37 H 1.09004 * 109.46341 * 299.99671 * 10 9 8 38 38 H 1.09007 * 109.87765 * 59.56967 * 14 13 11 39 39 H 1.09001 * 110.01372 * 298.48159 * 14 13 11 40 40 H 1.09001 * 110.72598 * 219.44849 * 15 14 13 41 41 H 1.08996 * 110.71948 * 96.17114 * 15 14 13 42 42 H 0.96701 * 114.00052 * 295.42104 * 17 16 15 43 43 H 0.97000 * 119.99793 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.37052 * 85.24270 * 26 13 11 45 45 H 1.09004 * 110.36714 * 322.91737 * 26 13 11 46 46 H 1.08006 * 120.05432 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9170 3.6065 -0.0011 6 6 3.2968 3.6823 -0.0016 7 6 4.0565 2.5212 -0.0011 8 8 5.4134 2.5963 -0.0022 9 6 5.9908 3.9033 -0.0033 10 6 7.5164 3.7871 -0.0051 11 6 8.1253 5.1655 -0.0057 12 8 7.4096 6.1447 -0.0052 13 7 9.4653 5.3103 -0.0067 14 6 10.4456 4.2146 -0.0067 15 6 11.8491 4.8555 -0.0341 16 6 11.5756 6.2663 -0.6190 17 8 11.5089 6.2252 -2.0458 18 6 12.6170 7.2533 -0.1581 19 1 12.3299 8.0935 0.4567 20 6 13.9371 7.0806 -0.5166 21 7 14.3060 5.9973 -1.1647 22 14 15.2014 8.3851 -0.0818 23 1 15.8689 8.0217 1.1940 24 1 16.2151 8.4720 -1.1635 25 1 14.5254 9.6986 0.0697 26 6 10.1908 6.5937 -0.0068 27 6 3.4300 1.2842 -0.0058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2119 2.3187 -0.0005 32 1 1.3274 4.5114 -0.0019 33 1 3.7844 4.6460 -0.0016 34 1 5.6683 4.4439 0.8866 35 1 5.6670 4.4429 -0.8934 36 1 7.8386 3.2467 -0.8952 37 1 7.8406 3.2475 0.8848 38 1 10.3051 3.5917 -0.8901 39 1 10.3309 3.6115 0.8940 40 1 12.5180 4.2915 -0.6842 41 1 12.2594 4.9285 0.9731 42 1 12.3406 5.9757 -2.4714 43 1 15.2348 5.8756 -1.4167 44 1 10.3046 6.9653 1.0115 45 1 9.6673 7.3254 -0.6223 46 1 4.0196 0.3793 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592854894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:10 Heat of formation + Delta-G solvation = -133.477910 kcal Electronic energy + Delta-G solvation = -27962.500727 eV Core-core repulsion = 23817.966205 eV Total energy + Delta-G solvation = -4144.534522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.67270 -39.72668 -39.12860 -37.38897 -36.61383 -34.37112 -32.29491 -32.26611 -30.96862 -29.83593 -29.40180 -28.34227 -27.62893 -25.59871 -24.10350 -22.92140 -22.23715 -21.49767 -19.78968 -19.12805 -18.65446 -17.31287 -17.00236 -16.64219 -16.49294 -16.25872 -16.07885 -16.02321 -15.22918 -14.99828 -14.95490 -14.74038 -14.16080 -13.87395 -13.82970 -13.35506 -13.13854 -12.95719 -12.60747 -12.45538 -12.27095 -12.18012 -11.99716 -11.79321 -11.59018 -11.43480 -11.33041 -11.30123 -10.97008 -10.91173 -10.77407 -10.64539 -10.51937 -10.08554 -9.56397 -9.39040 -8.77160 -8.74088 -8.35410 -8.26247 -8.08221 -6.33069 -4.41192 1.13756 1.19086 2.52988 2.94130 3.15856 3.16708 3.25300 3.30273 3.51984 3.73536 4.23467 4.48247 4.64338 4.73390 4.77318 4.77439 4.89406 4.90668 4.92929 4.98793 5.02422 5.10013 5.27403 5.34478 5.49642 5.61302 5.63083 5.70037 5.74869 5.82920 5.97115 5.98393 6.03187 6.21098 6.23081 6.28006 6.37526 6.58365 6.84377 6.90523 7.03266 7.23405 7.25114 7.32054 7.68790 7.94789 8.03545 8.49153 8.61534 9.25661 9.31789 10.73629 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.042252 B = 0.001759 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.534281 B =15914.021468 C =16298.382366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.162 3.838 4 C -0.248 4.248 5 C -0.040 4.040 6 C -0.242 4.242 7 C 0.175 3.825 8 O -0.313 6.313 9 C 0.077 3.923 10 C -0.135 4.135 11 C 0.529 3.471 12 O -0.558 6.558 13 N -0.603 5.603 14 C 0.095 3.905 15 C -0.135 4.135 16 C 0.247 3.753 17 O -0.582 6.582 18 C -0.537 4.537 19 H 0.065 0.935 20 C 0.073 3.927 21 N -0.893 5.893 22 Si 0.902 3.098 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.120 3.880 27 C -0.190 4.190 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.380 0.620 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.080 -11.117 2.716 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.116 3.884 4 C -0.267 4.267 5 C -0.059 4.059 6 C -0.261 4.261 7 C 0.129 3.871 8 O -0.226 6.226 9 C 0.002 3.998 10 C -0.175 4.175 11 C 0.317 3.683 12 O -0.439 6.439 13 N -0.335 5.335 14 C -0.027 4.027 15 C -0.174 4.174 16 C 0.206 3.794 17 O -0.390 6.390 18 C -0.576 4.576 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.532 5.532 22 Si 0.729 3.271 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.196 1.196 26 C -0.001 4.001 27 C -0.209 4.209 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.230 0.770 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.752 -10.872 2.754 24.473 hybrid contribution 1.153 0.705 0.139 1.359 sum -20.599 -10.168 2.892 23.153 Atomic orbital electron populations 1.23071 0.78147 1.03965 1.01502 1.86060 1.21527 1.26823 1.88496 1.18546 0.91342 0.84173 0.94329 1.21117 0.99996 0.92238 1.13388 1.20719 0.93764 0.97119 0.94257 1.21318 0.94922 0.98081 1.11797 1.18531 0.82391 0.93123 0.93071 1.85969 1.17032 1.31700 1.87946 1.22504 0.92412 0.81683 1.03222 1.21433 0.93720 0.96463 1.05926 1.19725 0.81287 0.90319 0.77012 1.90677 1.60106 1.41068 1.52004 1.48582 1.04371 1.09964 1.70603 1.22258 0.90984 0.89572 0.99923 1.23188 0.92068 0.99564 1.02533 1.19611 0.89352 0.91143 0.79272 1.86142 1.39681 1.92671 1.20550 1.21437 0.91963 1.10785 1.33385 0.91667 1.24989 0.98408 0.95426 0.94143 1.69764 1.18220 1.25500 1.39735 0.86414 0.80646 0.81915 0.78090 1.20557 1.20933 1.19622 1.22393 0.92751 0.84625 1.00327 1.19410 0.91422 0.96841 1.13224 0.92529 0.92525 0.88183 0.85465 0.85416 0.84766 0.90845 0.90788 0.87847 0.87990 0.92189 0.92626 0.89341 0.91293 0.77021 0.92218 0.90907 0.91040 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.50 -19.43 -0.20 -3.28 16 3 C 0.16 1.73 6.68 -39.24 -0.26 1.47 16 4 C -0.25 -2.31 9.04 -39.40 -0.36 -2.66 16 5 C -0.04 -0.39 10.03 -39.63 -0.40 -0.78 16 6 C -0.24 -2.73 9.04 -39.41 -0.36 -3.08 16 7 C 0.18 2.17 6.68 -39.24 -0.26 1.90 16 8 O -0.31 -4.05 10.13 -19.41 -0.20 -4.25 16 9 C 0.08 0.99 4.03 37.16 0.15 1.14 16 10 C -0.14 -1.80 5.26 -27.88 -0.15 -1.95 16 11 C 0.53 9.41 7.85 -10.99 -0.09 9.32 16 12 O -0.56 -11.53 16.24 5.55 0.09 -11.44 16 13 N -0.60 -11.47 3.33 -170.53 -0.57 -12.04 16 14 C 0.10 1.64 6.49 -3.07 -0.02 1.62 16 15 C -0.13 -2.79 5.37 -24.90 -0.13 -2.93 16 16 C 0.25 5.77 0.88 -89.63 -0.08 5.69 16 17 O -0.58 -14.37 13.17 -35.23 -0.46 -14.84 16 18 C -0.54 -13.65 8.25 -34.44 -0.28 -13.94 16 19 H 0.07 1.66 7.79 -52.48 -0.41 1.25 16 20 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 21 N -0.89 -22.38 10.76 55.43 0.60 -21.78 16 22 Si 0.90 19.81 29.54 -169.99 -5.02 14.78 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.12 2.62 6.08 -2.53 -0.02 2.60 16 27 C -0.19 -2.23 9.93 -39.29 -0.39 -2.62 16 28 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 1.45 6.29 -52.49 -0.33 1.12 16 34 H 0.07 0.94 7.62 -51.93 -0.40 0.54 16 35 H 0.07 0.97 7.62 -51.93 -0.40 0.58 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.93 7.52 -51.93 -0.39 1.53 16 41 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 42 H 0.38 9.35 7.57 45.56 0.34 9.70 16 43 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 44 H 0.07 1.53 8.03 -51.93 -0.42 1.12 16 45 H 0.07 1.65 8.04 -51.93 -0.42 1.24 16 46 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -29.21 380.93 -7.82 -37.03 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.05 Total: 11.40 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.74 Total: -1.33 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.03 Total: -33.81 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.77 Total: -33.81 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.21 -7.82 -37.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.450 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds