Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99529 * 2 1 4 4 C 1.38797 * 120.02590 * 359.97438 * 3 2 1 5 5 C 1.38157 * 120.04825 * 180.02562 * 4 3 2 6 6 C 1.38189 * 120.11553 * 0.02738 * 5 4 3 7 7 C 1.38757 * 120.05209 * 359.97045 * 6 5 4 8 8 O 1.35893 * 120.02478 * 179.97438 * 7 6 5 9 9 C 1.42891 * 117.00521 * 0.02562 * 8 7 6 10 10 C 1.53005 * 109.47727 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47453 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00071 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99926 * 179.97438 * 11 10 9 14 14 C 1.47016 * 125.65127 * 359.97029 * 13 11 10 15 15 C 1.54317 * 107.27544 * 178.98694 * 14 13 11 16 16 C 1.55161 * 102.94040 * 337.81168 * 15 14 13 17 17 O 1.42903 * 111.00309 * 277.38547 * 16 15 14 18 18 C 1.50696 * 111.00179 * 153.57607 * 16 15 14 19 19 H 1.08003 * 119.99607 * 243.51886 * 18 16 15 20 20 C 1.37879 * 120.00584 * 63.24935 * 18 16 15 21 21 N 1.31521 * 119.99465 * 354.29255 * 20 18 16 22 22 Si 1.86794 * 120.00270 * 174.29525 * 20 18 16 23 23 H 1.48502 * 109.46911 * 94.98366 * 22 20 18 24 24 H 1.48502 * 109.47227 * 214.97830 * 22 20 18 25 25 H 1.48496 * 109.47481 * 334.98199 * 22 20 18 26 26 C 1.47426 * 125.64631 * 180.02562 * 13 11 10 27 27 C 1.38606 * 120.02645 * 180.27695 * 3 2 1 28 28 H 1.08992 * 109.47700 * 299.99920 * 1 2 3 29 29 H 1.09000 * 109.47152 * 60.00644 * 1 2 3 30 30 H 1.09000 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.97587 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.94178 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.97870 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47511 * 59.99570 * 9 8 7 35 35 H 1.09004 * 109.47271 * 299.99794 * 9 8 7 36 36 H 1.08998 * 109.47023 * 59.99214 * 10 9 8 37 37 H 1.09004 * 109.46341 * 299.99671 * 10 9 8 38 38 H 1.09007 * 109.87765 * 59.56967 * 14 13 11 39 39 H 1.09001 * 110.01372 * 298.48159 * 14 13 11 40 40 H 1.09001 * 110.72598 * 219.44849 * 15 14 13 41 41 H 1.08996 * 110.71948 * 96.17114 * 15 14 13 42 42 H 0.96701 * 114.00052 * 295.42104 * 17 16 15 43 43 H 0.97000 * 119.99793 * 180.02562 * 21 20 18 44 44 H 1.08997 * 110.37052 * 85.24270 * 26 13 11 45 45 H 1.09004 * 110.36714 * 322.91737 * 26 13 11 46 46 H 1.08006 * 120.05432 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3753 -0.0005 5 6 1.9170 3.6065 -0.0011 6 6 3.2968 3.6823 -0.0016 7 6 4.0565 2.5212 -0.0011 8 8 5.4134 2.5963 -0.0022 9 6 5.9908 3.9033 -0.0033 10 6 7.5164 3.7871 -0.0051 11 6 8.1253 5.1655 -0.0057 12 8 7.4096 6.1447 -0.0052 13 7 9.4653 5.3103 -0.0067 14 6 10.4456 4.2146 -0.0067 15 6 11.8491 4.8555 -0.0341 16 6 11.5756 6.2663 -0.6190 17 8 11.5089 6.2252 -2.0458 18 6 12.6170 7.2533 -0.1581 19 1 12.3299 8.0935 0.4567 20 6 13.9371 7.0806 -0.5166 21 7 14.3060 5.9973 -1.1647 22 14 15.2014 8.3851 -0.0818 23 1 15.8689 8.0217 1.1940 24 1 16.2151 8.4720 -1.1635 25 1 14.5254 9.6986 0.0697 26 6 10.1908 6.5937 -0.0068 27 6 3.4300 1.2842 -0.0058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2119 2.3187 -0.0005 32 1 1.3274 4.5114 -0.0019 33 1 3.7844 4.6460 -0.0016 34 1 5.6683 4.4439 0.8866 35 1 5.6670 4.4429 -0.8934 36 1 7.8386 3.2467 -0.8952 37 1 7.8406 3.2475 0.8848 38 1 10.3051 3.5917 -0.8901 39 1 10.3309 3.6115 0.8940 40 1 12.5180 4.2915 -0.6842 41 1 12.2594 4.9285 0.9731 42 1 12.3406 5.9757 -2.4714 43 1 15.2348 5.8756 -1.4167 44 1 10.3046 6.9653 1.0115 45 1 9.6673 7.3254 -0.6223 46 1 4.0196 0.3793 -0.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592854894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = -152.709518 kcal Electronic energy + Delta-G solvation = -27963.334672 eV Core-core repulsion = 23817.966205 eV Total energy + Delta-G solvation = -4145.368467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52184 -41.07213 -40.05064 -38.99258 -37.43259 -36.10473 -34.21177 -33.38805 -31.87327 -31.28915 -30.31753 -29.93423 -28.18716 -27.23640 -25.36906 -23.89392 -23.49625 -22.40353 -21.54318 -20.25571 -19.78873 -19.11205 -18.20880 -17.57727 -17.45424 -17.21951 -17.01065 -16.91310 -16.72350 -16.53459 -16.30031 -15.83666 -15.61361 -15.28359 -14.82375 -14.59734 -14.32184 -14.01428 -13.91484 -13.64670 -13.56814 -13.27110 -13.19584 -13.01951 -13.01843 -12.97500 -12.64527 -12.47088 -12.36208 -12.27492 -12.12105 -11.84927 -11.73901 -11.61733 -11.25433 -11.01638 -10.67918 -10.13234 -9.61079 -9.55154 -9.14940 -8.23891 -6.38335 0.34619 0.38596 1.41284 1.45703 1.52568 1.55372 1.59061 2.16799 2.40238 2.67738 2.72259 3.00661 3.50800 3.72179 3.80988 3.88110 3.89677 4.03800 4.05841 4.12119 4.17271 4.30943 4.37315 4.38931 4.41519 4.42660 4.53051 4.59833 4.64829 4.68662 4.74799 4.76253 4.89653 4.91391 5.18580 5.21287 5.25563 5.26068 5.44261 5.46214 5.50851 5.58076 5.78424 6.07418 6.26789 6.42363 6.57199 6.65477 7.05797 7.31917 7.37224 8.81206 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.042252 B = 0.001759 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.534281 B =15914.021468 C =16298.382366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.156 3.844 4 C -0.244 4.244 5 C -0.041 4.041 6 C -0.256 4.256 7 C 0.155 3.845 8 O -0.319 6.319 9 C 0.083 3.917 10 C -0.123 4.123 11 C 0.526 3.474 12 O -0.592 6.592 13 N -0.608 5.608 14 C 0.102 3.898 15 C -0.126 4.126 16 C 0.232 3.768 17 O -0.592 6.592 18 C -0.564 4.564 19 H 0.054 0.946 20 C 0.039 3.961 21 N -0.903 5.903 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.280 1.280 25 H -0.277 1.277 26 C 0.126 3.874 27 C -0.207 4.207 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.503 -12.375 3.238 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.110 3.890 4 C -0.262 4.262 5 C -0.059 4.059 6 C -0.274 4.274 7 C 0.109 3.891 8 O -0.233 6.233 9 C 0.008 3.992 10 C -0.162 4.162 11 C 0.316 3.684 12 O -0.474 6.474 13 N -0.340 5.340 14 C -0.020 4.020 15 C -0.164 4.164 16 C 0.192 3.808 17 O -0.400 6.400 18 C -0.602 4.602 19 H 0.073 0.927 20 C -0.163 4.163 21 N -0.542 5.542 22 Si 0.783 3.217 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.202 1.202 26 C 0.003 3.997 27 C -0.227 4.227 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.173 0.827 32 H 0.172 0.828 33 H 0.151 0.849 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.226 0.774 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.189 -12.162 3.280 26.390 hybrid contribution 1.487 1.080 -0.042 1.839 sum -21.702 -11.082 3.238 24.582 Atomic orbital electron populations 1.23400 0.75933 1.05742 1.02579 1.86044 1.23855 1.26510 1.88282 1.18691 0.91190 0.85122 0.93986 1.21446 1.01408 0.91495 1.11870 1.21065 0.93274 0.98415 0.93117 1.21444 0.95876 0.97668 1.12456 1.18716 0.82161 0.93808 0.94396 1.85923 1.17674 1.31326 1.88389 1.22356 0.92206 0.81827 1.02818 1.21364 0.93603 0.93445 1.07825 1.20480 0.80500 0.91764 0.75646 1.90661 1.60687 1.42766 1.53294 1.48637 1.05133 1.09200 1.71038 1.22292 0.88169 0.88959 1.02563 1.22959 0.94156 0.97921 1.01408 1.19784 0.89835 0.92570 0.78623 1.86130 1.39488 1.92830 1.21551 1.21667 0.93118 1.11353 1.34057 0.92732 1.25570 0.99667 0.96976 0.94105 1.69823 1.18597 1.26120 1.39664 0.85565 0.78582 0.79533 0.78038 1.19908 1.20559 1.20207 1.22134 0.92144 0.85736 0.99663 1.19541 0.92329 0.96637 1.14143 0.91363 0.91420 0.86255 0.82657 0.82838 0.84931 0.91075 0.91568 0.86253 0.85497 0.90552 0.88941 0.90550 0.91977 0.77379 0.91983 0.90824 0.93436 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.00 10.50 -92.43 -0.97 -6.97 16 3 C 0.16 3.14 6.68 22.49 0.15 3.29 16 4 C -0.24 -3.97 9.04 22.38 0.20 -3.77 16 5 C -0.04 -0.70 10.03 22.24 0.22 -0.48 16 6 C -0.26 -5.58 9.04 22.38 0.20 -5.38 16 7 C 0.15 3.78 6.68 22.49 0.15 3.93 16 8 O -0.32 -8.05 10.13 -92.35 -0.94 -8.99 16 9 C 0.08 2.08 4.03 71.98 0.29 2.37 16 10 C -0.12 -3.02 5.26 29.85 0.16 -2.87 16 11 C 0.53 18.23 7.85 87.66 0.69 18.91 16 12 O -0.59 -24.56 16.24 -3.04 -0.05 -24.61 16 13 N -0.61 -22.57 3.33 -811.82 -2.70 -25.27 16 14 C 0.10 3.30 6.49 86.73 0.56 3.86 16 15 C -0.13 -5.14 5.37 31.78 0.17 -4.97 16 16 C 0.23 10.98 0.88 -10.15 -0.01 10.98 16 17 O -0.59 -29.68 13.17 -148.98 -1.96 -31.65 16 18 C -0.56 -29.09 8.25 25.60 0.21 -28.88 16 19 H 0.05 2.84 7.79 -2.91 -0.02 2.82 16 20 C 0.04 1.94 5.26 84.65 0.45 2.38 16 21 N -0.90 -45.18 10.76 21.45 0.23 -44.95 16 22 Si 0.96 40.60 29.54 68.60 2.03 42.62 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.13 5.55 6.08 86.85 0.53 6.08 16 27 C -0.21 -4.81 9.93 22.46 0.22 -4.59 16 28 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 29 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.16 1.57 6.29 -2.91 -0.02 1.55 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 33 H 0.13 2.85 6.29 -2.91 -0.02 2.83 16 34 H 0.07 1.79 7.62 -2.39 -0.02 1.77 16 35 H 0.07 1.73 7.62 -2.39 -0.02 1.71 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 38 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 3.29 7.52 -2.39 -0.02 3.27 16 41 H 0.06 2.58 8.03 -2.39 -0.02 2.56 16 42 H 0.38 18.89 7.57 -74.06 -0.56 18.33 16 43 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 44 H 0.07 3.17 8.03 -2.39 -0.02 3.15 16 45 H 0.05 2.28 8.04 -2.39 -0.02 2.26 16 46 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -63.61 380.93 1.39 -62.22 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.44 Total: 35.46 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 5.31 Total: 2.12 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -2.47 Total: -70.21 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -3.92 Total: -72.21 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -63.61 1.39 -62.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592854894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.485 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds