Wall clock time and date at job start Tue Mar 31 2020 19:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99736 * 2 1 4 4 C 1.53001 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47765 * 64.99830 * 4 3 2 6 6 C 1.46500 * 119.99872 * 270.00285 * 5 4 3 7 7 C 1.50698 * 109.47138 * 275.75857 * 6 5 4 8 8 H 1.08006 * 119.99842 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00060 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99960 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47077 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47277 * 119.99921 * 11 9 7 14 14 H 1.48501 * 109.47091 * 240.00178 * 11 9 7 15 15 C 1.34777 * 120.00266 * 89.99653 * 5 4 3 16 16 O 1.21592 * 119.99846 * 4.70386 * 15 5 4 17 17 C 1.47538 * 119.99924 * 184.70703 * 15 5 4 18 18 C 1.39906 * 120.31767 * 306.19613 * 17 15 5 19 19 C 1.37752 * 120.05729 * 179.97438 * 18 17 15 20 20 C 1.38633 * 120.43292 * 359.97438 * 19 18 17 21 21 C 1.38359 * 120.05564 * 359.97438 * 20 19 18 22 22 C 1.38770 * 120.15282 * 0.06846 * 21 20 19 23 23 O 1.36183 * 119.69293 * 179.80214 * 22 21 20 24 24 C 1.42923 * 115.92077 * 68.41661 * 23 22 21 25 25 C 1.52076 * 110.71975 * 275.56934 * 24 23 22 26 26 C 1.52070 * 112.36733 * 64.82984 * 25 24 23 27 27 O 1.36498 * 120.28771 * 180.02562 * 21 20 19 28 28 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47637 * 300.00354 * 1 2 3 30 30 H 1.09003 * 109.47183 * 60.00681 * 1 2 3 31 31 H 1.08992 * 109.47735 * 60.00064 * 3 2 1 32 32 H 1.09004 * 109.47362 * 299.99446 * 3 2 1 33 33 H 1.09000 * 109.47034 * 304.99282 * 4 3 2 34 34 H 1.09003 * 109.47220 * 184.99952 * 4 3 2 35 35 H 1.09004 * 109.47122 * 35.75722 * 6 5 4 36 36 H 1.09000 * 109.47033 * 155.75700 * 6 5 4 37 37 H 0.97006 * 120.00338 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.97418 * 359.96010 * 18 17 15 39 39 H 1.07994 * 119.78759 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.97468 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.21875 * 35.91579 * 24 23 22 42 42 H 1.09001 * 109.21989 * 155.30265 * 24 23 22 43 43 H 1.09000 * 108.94060 * 304.06535 * 25 24 23 44 44 H 1.08998 * 108.87167 * 185.54560 * 25 24 23 45 45 H 1.09000 * 109.21273 * 174.79115 * 26 25 24 46 46 H 1.09002 * 109.20908 * 55.42075 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.4519 -1.3105 -0.8112 8 1 6.1421 -0.5659 -0.4428 9 6 5.8025 -2.6438 -0.7942 10 7 4.9619 -3.5505 -1.2423 11 14 7.4715 -3.1624 -0.1347 12 1 8.2247 -1.9609 0.3061 13 1 7.2851 -4.0796 1.0182 14 1 8.2314 -3.8590 -1.2036 15 6 4.2616 1.3336 -2.3218 16 8 4.2369 2.5452 -2.2230 17 6 4.6044 0.7055 -3.6120 18 6 5.6312 -0.2419 -3.6856 19 6 5.9464 -0.8254 -4.8930 20 6 5.2514 -0.4811 -6.0420 21 6 4.2331 0.4537 -5.9820 22 6 3.9050 1.0504 -4.7729 23 8 2.9038 1.9723 -4.7253 24 6 1.5840 1.4736 -4.9535 25 6 1.2890 1.3940 -6.4432 26 6 2.1771 0.3863 -7.1561 27 8 3.5453 0.7958 -7.1103 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3193 -1.3639 -0.7528 36 1 4.0135 -1.2014 -2.3838 37 1 5.2086 -4.4886 -1.2307 38 1 6.1775 -0.5158 -2.7951 39 1 6.7402 -1.5559 -4.9448 40 1 5.5050 -0.9429 -6.9848 41 1 1.4956 0.4791 -4.5160 42 1 0.8621 2.1392 -4.4803 43 1 1.4436 2.3773 -6.8875 44 1 0.2468 1.1060 -6.5814 45 1 1.8621 0.3031 -8.1962 46 1 2.0771 -0.5854 -6.6722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593451808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:19 Heat of formation + Delta-G solvation = -119.527529 kcal Electronic energy + Delta-G solvation = -31027.776482 eV Core-core repulsion = 26883.846894 eV Total energy + Delta-G solvation = -4143.929588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71415 -39.11735 -37.51410 -37.23358 -36.76481 -34.89004 -32.79108 -32.64437 -30.99572 -29.34928 -28.72677 -27.09706 -26.46287 -25.95915 -23.85222 -22.88864 -22.16890 -21.66943 -21.44244 -19.04878 -17.91581 -17.09503 -16.68080 -16.53232 -16.20322 -15.86028 -15.52608 -15.21963 -15.17713 -15.05846 -14.69663 -14.50085 -14.33309 -13.92281 -13.69477 -13.53769 -13.09638 -13.03714 -12.37901 -12.20007 -11.87933 -11.84088 -11.76090 -11.63916 -11.49765 -11.27122 -10.95330 -10.91453 -10.84196 -10.79974 -10.52210 -10.29282 -10.18535 -9.84177 -9.70933 -9.40261 -9.03999 -8.59980 -8.32344 -8.09002 -7.68452 -6.17774 -4.24905 1.34525 1.51341 3.20196 3.29749 3.32356 3.37785 3.55201 3.69797 3.94711 4.14929 4.25559 4.34627 4.65593 4.75175 5.10316 5.11984 5.14138 5.28910 5.37180 5.38287 5.42815 5.46744 5.51589 5.59669 5.62512 5.64286 5.71176 5.71423 5.76712 5.82975 5.90643 5.94421 6.03939 6.14584 6.38536 6.53934 6.68465 6.84070 6.86566 7.05845 7.33288 7.35128 7.47421 7.59845 7.78604 7.83604 8.08252 8.36340 8.79408 9.00927 9.41099 10.88107 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.005643 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.764607 B = 4961.078975 C = 6741.365137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.583 5.583 6 C 0.234 3.766 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.883 5.883 11 Si 0.890 3.110 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.562 3.438 16 O -0.557 6.557 17 C -0.114 4.114 18 C -0.053 4.053 19 C -0.120 4.120 20 C -0.103 4.103 21 C 0.042 3.958 22 C 0.103 3.897 23 O -0.306 6.306 24 C 0.059 3.941 25 C -0.184 4.184 26 C 0.058 3.942 27 O -0.319 6.319 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.167 0.833 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 4.357 -6.519 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.312 5.312 6 C 0.115 3.885 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.520 5.520 11 Si 0.717 3.283 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.350 3.650 16 O -0.437 6.437 17 C -0.118 4.118 18 C -0.071 4.071 19 C -0.138 4.138 20 C -0.122 4.122 21 C -0.002 4.002 22 C 0.058 3.942 23 O -0.222 6.222 24 C -0.016 4.016 25 C -0.222 4.222 26 C -0.017 4.017 27 O -0.236 6.236 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.184 0.816 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.076 0.924 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.749 4.893 -6.591 11.288 hybrid contribution 0.298 -0.607 0.408 0.789 sum -7.451 4.286 -6.183 10.589 Atomic orbital electron populations 1.22674 0.82301 1.02329 0.99110 1.88070 1.18537 1.27443 1.95186 1.23034 0.95350 0.84885 0.99711 1.21333 0.90965 0.99749 0.88101 1.48085 1.63411 1.10006 1.09732 1.19608 0.97535 0.72657 0.98743 1.21531 1.01134 0.92465 1.42731 0.91954 1.24914 0.97226 0.96349 0.94971 1.69947 1.35290 1.01391 1.45380 0.86566 0.83958 0.78852 0.78907 1.19561 1.20859 1.20755 1.18003 0.77074 0.86204 0.83740 1.90699 1.54246 1.13919 1.84884 1.19923 1.00336 0.98916 0.92615 1.22087 0.94582 0.90600 0.99813 1.21033 1.00600 1.00576 0.91578 1.21139 0.96398 0.95321 0.99354 1.18879 0.97254 0.98527 0.85494 1.19013 0.92110 0.91897 0.91211 1.86396 1.13675 1.31300 1.90839 1.22596 0.83562 1.00420 0.95066 1.22462 1.00620 1.02096 0.97002 1.22602 0.80800 0.96679 1.01596 1.86357 1.23064 1.77758 1.36384 0.89910 0.94686 0.94806 0.93136 0.93528 0.89182 0.89317 0.93340 0.94292 0.92605 0.81573 0.84861 0.85151 0.92439 0.88350 0.90025 0.89563 0.88247 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.67 9.45 -35.23 -0.33 -7.01 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.12 2.30 5.87 -4.04 -0.02 2.27 16 5 N -0.58 -12.64 2.42 -176.29 -0.43 -13.07 16 6 C 0.23 5.58 4.53 -5.19 -0.02 5.56 16 7 C -0.54 -13.49 7.02 -34.44 -0.24 -13.73 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.88 -23.52 13.29 55.43 0.74 -22.79 16 11 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.56 12.64 6.86 -12.47 -0.09 12.55 16 16 O -0.56 -13.51 16.31 2.32 0.04 -13.47 16 17 C -0.11 -2.42 4.74 -104.88 -0.50 -2.92 16 18 C -0.05 -1.06 7.68 -39.13 -0.30 -1.36 16 19 C -0.12 -2.05 10.02 -39.61 -0.40 -2.44 16 20 C -0.10 -1.66 9.99 -39.39 -0.39 -2.06 16 21 C 0.04 0.74 5.73 -39.34 -0.23 0.52 16 22 C 0.10 2.03 5.72 -38.78 -0.22 1.81 16 23 O -0.31 -5.91 9.37 -41.00 -0.38 -6.30 16 24 C 0.06 0.85 6.52 36.69 0.24 1.09 16 25 C -0.18 -2.12 5.92 -27.67 -0.16 -2.28 16 26 C 0.06 0.71 6.51 36.68 0.24 0.95 16 27 O -0.32 -5.12 10.16 -36.82 -0.37 -5.50 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.69 8.07 -51.93 -0.42 1.27 16 34 H 0.09 1.61 7.36 -51.93 -0.38 1.23 16 35 H 0.05 1.26 7.03 -51.93 -0.37 0.89 16 36 H 0.04 0.98 5.65 -51.93 -0.29 0.69 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.17 3.60 5.39 -52.49 -0.28 3.31 16 39 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 40 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 42 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -31.26 376.60 -7.70 -38.96 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.76 Total: 4.54 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.85 Total: 4.20 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.31 Total: -35.85 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.05 Total: -32.27 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.26 -7.70 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593451808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.571 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds