Wall clock time and date at job start Tue Mar 31 2020 19:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99736 * 2 1 4 4 C 1.53001 * 109.46789 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47765 * 64.99830 * 4 3 2 6 6 C 1.46500 * 119.99872 * 270.00285 * 5 4 3 7 7 C 1.50698 * 109.47138 * 275.75857 * 6 5 4 8 8 H 1.08006 * 119.99842 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00060 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00057 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99960 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47077 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47277 * 119.99921 * 11 9 7 14 14 H 1.48501 * 109.47091 * 240.00178 * 11 9 7 15 15 C 1.34777 * 120.00266 * 89.99653 * 5 4 3 16 16 O 1.21592 * 119.99846 * 4.70386 * 15 5 4 17 17 C 1.47538 * 119.99924 * 184.70703 * 15 5 4 18 18 C 1.39906 * 120.31767 * 306.19613 * 17 15 5 19 19 C 1.37752 * 120.05729 * 179.97438 * 18 17 15 20 20 C 1.38633 * 120.43292 * 359.97438 * 19 18 17 21 21 C 1.38359 * 120.05564 * 359.97438 * 20 19 18 22 22 C 1.38770 * 120.15282 * 0.06846 * 21 20 19 23 23 O 1.36183 * 119.69293 * 179.80214 * 22 21 20 24 24 C 1.42923 * 115.92077 * 68.41661 * 23 22 21 25 25 C 1.52076 * 110.71975 * 275.56934 * 24 23 22 26 26 C 1.52070 * 112.36733 * 64.82984 * 25 24 23 27 27 O 1.36498 * 120.28771 * 180.02562 * 21 20 19 28 28 H 1.09004 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47637 * 300.00354 * 1 2 3 30 30 H 1.09003 * 109.47183 * 60.00681 * 1 2 3 31 31 H 1.08992 * 109.47735 * 60.00064 * 3 2 1 32 32 H 1.09004 * 109.47362 * 299.99446 * 3 2 1 33 33 H 1.09000 * 109.47034 * 304.99282 * 4 3 2 34 34 H 1.09003 * 109.47220 * 184.99952 * 4 3 2 35 35 H 1.09004 * 109.47122 * 35.75722 * 6 5 4 36 36 H 1.09000 * 109.47033 * 155.75700 * 6 5 4 37 37 H 0.97006 * 120.00338 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.97418 * 359.96010 * 18 17 15 39 39 H 1.07994 * 119.78759 * 179.97438 * 19 18 17 40 40 H 1.08000 * 119.97468 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.21875 * 35.91579 * 24 23 22 42 42 H 1.09001 * 109.21989 * 155.30265 * 24 23 22 43 43 H 1.09000 * 108.94060 * 304.06535 * 25 24 23 44 44 H 1.08998 * 108.87167 * 185.54560 * 25 24 23 45 45 H 1.09000 * 109.21273 * 174.79115 * 26 25 24 46 46 H 1.09002 * 109.20908 * 55.42075 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8921 -1.3426 7 6 5.4519 -1.3105 -0.8112 8 1 6.1421 -0.5659 -0.4428 9 6 5.8025 -2.6438 -0.7942 10 7 4.9619 -3.5505 -1.2423 11 14 7.4715 -3.1624 -0.1347 12 1 8.2247 -1.9609 0.3061 13 1 7.2851 -4.0796 1.0182 14 1 8.2314 -3.8590 -1.2036 15 6 4.2616 1.3336 -2.3218 16 8 4.2369 2.5452 -2.2230 17 6 4.6044 0.7055 -3.6120 18 6 5.6312 -0.2419 -3.6856 19 6 5.9464 -0.8254 -4.8930 20 6 5.2514 -0.4811 -6.0420 21 6 4.2331 0.4537 -5.9820 22 6 3.9050 1.0504 -4.7729 23 8 2.9038 1.9723 -4.7253 24 6 1.5840 1.4736 -4.9535 25 6 1.2890 1.3940 -6.4432 26 6 2.1771 0.3863 -7.1561 27 8 3.5453 0.7958 -7.1103 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9785 2.1765 0.0889 35 1 3.3193 -1.3639 -0.7528 36 1 4.0135 -1.2014 -2.3838 37 1 5.2086 -4.4886 -1.2307 38 1 6.1775 -0.5158 -2.7951 39 1 6.7402 -1.5559 -4.9448 40 1 5.5050 -0.9429 -6.9848 41 1 1.4956 0.4791 -4.5160 42 1 0.8621 2.1392 -4.4803 43 1 1.4436 2.3773 -6.8875 44 1 0.2468 1.1060 -6.5814 45 1 1.8621 0.3031 -8.1962 46 1 2.0771 -0.5854 -6.6722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593451808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:18 Heat of formation + Delta-G solvation = -138.595849 kcal Electronic energy + Delta-G solvation = -31028.603346 eV Core-core repulsion = 26883.846894 eV Total energy + Delta-G solvation = -4144.756452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08192 -40.69723 -38.83065 -38.55857 -38.14792 -36.65840 -34.57226 -33.87016 -32.46457 -30.84142 -30.08642 -28.92445 -27.59292 -27.17240 -25.36970 -24.72838 -23.53860 -22.99814 -22.64421 -20.54587 -19.28566 -18.70144 -18.31343 -18.09228 -17.64734 -17.22689 -16.98534 -16.69548 -16.42339 -16.36419 -16.21482 -15.93464 -15.80944 -15.17039 -15.09087 -14.82066 -14.61247 -14.21054 -14.17412 -13.68687 -13.35020 -13.25715 -13.17835 -13.05655 -12.87748 -12.76413 -12.68979 -12.53385 -12.14849 -12.12059 -11.92618 -11.88735 -11.63031 -11.40068 -11.22296 -10.75104 -10.62022 -10.49971 -9.81181 -9.49364 -9.44820 -8.14298 -6.27961 -0.09256 0.13175 1.43396 1.47699 1.57335 1.70910 2.14550 2.37317 2.43963 2.53082 2.85614 2.91716 3.15243 3.58620 3.67681 3.77423 4.06133 4.09278 4.13736 4.18084 4.22803 4.31064 4.34753 4.35892 4.40193 4.44407 4.49609 4.52429 4.56085 4.63883 4.73301 4.81154 4.83698 4.87455 5.01079 5.04537 5.17096 5.27252 5.35243 5.44956 5.61835 5.70704 5.84922 6.09883 6.11470 6.25655 6.51668 6.56062 6.83543 7.23729 7.42496 8.91591 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.005643 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.764607 B = 4961.078975 C = 6741.365137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.058 3.942 4 C 0.114 3.886 5 N -0.584 5.584 6 C 0.258 3.742 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.032 3.968 10 N -0.911 5.911 11 Si 0.950 3.050 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.560 3.440 16 O -0.584 6.584 17 C -0.146 4.146 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.090 4.090 21 C 0.044 3.956 22 C 0.091 3.909 23 O -0.334 6.334 24 C 0.048 3.952 25 C -0.176 4.176 26 C 0.049 3.951 27 O -0.329 6.329 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 3.859 -7.980 12.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.020 4.020 4 C -0.009 4.009 5 N -0.313 5.313 6 C 0.138 3.862 7 C -0.581 4.581 8 H 0.071 0.929 9 C -0.170 4.170 10 N -0.550 5.550 11 Si 0.776 3.224 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.349 3.651 16 O -0.466 6.466 17 C -0.149 4.149 18 C -0.089 4.089 19 C -0.134 4.134 20 C -0.109 4.109 21 C 0.000 4.000 22 C 0.046 3.954 23 O -0.251 6.251 24 C -0.026 4.026 25 C -0.214 4.214 26 C -0.025 4.025 27 O -0.246 6.246 28 H 0.108 0.892 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.176 0.824 40 H 0.186 0.814 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.099 0.901 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.324 4.396 -8.043 12.381 hybrid contribution 0.347 -0.424 0.818 0.984 sum -7.976 3.972 -7.226 11.472 Atomic orbital electron populations 1.22881 0.79968 1.03366 1.00654 1.88017 1.21206 1.28085 1.95466 1.22904 0.93445 0.84832 1.00792 1.21535 0.93055 0.99519 0.86782 1.48092 1.63262 1.09226 1.10678 1.19151 0.96235 0.73667 0.97150 1.21582 1.01322 0.92559 1.42628 0.92859 1.25536 1.00204 0.96197 0.95017 1.70038 1.36912 1.01725 1.46311 0.85629 0.80190 0.78250 0.78365 1.19595 1.20821 1.19773 1.18290 0.76487 0.85946 0.84397 1.90654 1.55709 1.14847 1.85431 1.19965 1.01895 1.00503 0.92545 1.21923 0.95003 0.91583 1.00399 1.21293 1.00977 1.00349 0.90791 1.21491 0.94832 0.94200 1.00350 1.19025 0.97641 0.98116 0.85241 1.19197 0.92438 0.92178 0.91625 1.86325 1.15222 1.32191 1.91353 1.22909 0.81858 1.00062 0.97734 1.22433 1.02653 1.02063 0.94210 1.22974 0.78908 0.96657 1.03977 1.86329 1.24957 1.78095 1.35201 0.89224 0.92300 0.93999 0.89692 0.94546 0.89570 0.88950 0.95805 0.95742 0.92360 0.83787 0.82379 0.81422 0.93578 0.86905 0.90109 0.85732 0.84521 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.72 9.45 -148.98 -1.41 -16.12 16 3 C 0.06 1.92 6.28 71.98 0.45 2.37 16 4 C 0.11 4.43 5.87 86.38 0.51 4.94 16 5 N -0.58 -26.50 2.42 -829.91 -2.01 -28.51 16 6 C 0.26 12.86 4.53 85.63 0.39 13.25 16 7 C -0.54 -27.91 7.02 25.60 0.18 -27.73 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.03 1.63 5.46 84.66 0.46 2.09 16 10 N -0.91 -49.12 13.29 21.45 0.28 -48.83 16 11 Si 0.95 40.68 29.54 68.60 2.03 42.70 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 14 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 15 C 0.56 26.37 6.86 86.70 0.59 26.96 16 16 O -0.58 -29.53 16.31 -1.17 -0.02 -29.55 16 17 C -0.15 -6.40 4.74 -20.03 -0.09 -6.49 16 18 C -0.07 -2.92 7.68 22.56 0.17 -2.74 16 19 C -0.12 -3.88 10.02 22.25 0.22 -3.66 16 20 C -0.09 -2.73 9.99 22.39 0.22 -2.51 16 21 C 0.04 1.50 5.73 22.43 0.13 1.63 16 22 C 0.09 3.65 5.72 22.79 0.13 3.78 16 23 O -0.33 -13.13 9.37 -75.88 -0.71 -13.84 16 24 C 0.05 1.39 6.52 71.68 0.47 1.86 16 25 C -0.18 -3.63 5.92 29.98 0.18 -3.45 16 26 C 0.05 1.06 6.51 71.68 0.47 1.53 16 27 O -0.33 -9.87 10.16 -84.50 -0.86 -10.72 16 28 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 3.36 8.07 -2.39 -0.02 3.34 16 34 H 0.09 3.47 7.36 -2.39 -0.02 3.46 16 35 H 0.02 1.30 7.03 -2.38 -0.02 1.28 16 36 H 0.02 1.29 5.65 -2.39 -0.01 1.28 16 37 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 38 H 0.14 6.53 5.39 -2.91 -0.02 6.51 16 39 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.05 1.39 7.93 -2.39 -0.02 1.37 16 42 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.12 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 Total: -1.00 -69.85 376.60 4.02 -65.83 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.99 Total: 25.27 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.73 Total: 13.78 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -1.73 Total: -77.34 kcal Atomic # 8 Polarization: -67.24 SS G_CDS: -3.00 Total: -70.24 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -69.85 4.02 -65.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593451808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.762 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds