Wall clock time and date at job start Tue Mar 31 2020 18:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38749 * 120.05570 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94051 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05778 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11154 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97282 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47037 * 159.99887 * 8 7 6 10 10 O 1.42899 * 109.46657 * 40.00391 * 8 7 6 11 11 C 1.42903 * 113.99659 * 150.00091 * 10 8 7 12 12 C 1.50695 * 109.47344 * 280.00146 * 8 7 6 13 13 O 1.21279 * 120.00453 * 114.99453 * 12 8 7 14 14 N 1.34782 * 119.99928 * 295.00374 * 12 8 7 15 15 C 1.47019 * 125.64799 * 359.68494 * 14 12 8 16 16 C 1.54331 * 107.26453 * 178.85634 * 15 14 12 17 17 C 1.55155 * 103.02095 * 338.13934 * 16 15 14 18 18 O 1.42895 * 111.00603 * 277.23364 * 17 16 15 19 19 C 1.50705 * 111.03721 * 153.39733 * 17 16 15 20 20 H 1.08000 * 119.99905 * 247.78597 * 19 17 16 21 21 C 1.37874 * 119.99872 * 67.78596 * 19 17 16 22 22 N 1.31513 * 120.00105 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99846 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46865 * 60.00387 * 23 21 19 25 25 H 1.48499 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46833 * 300.00182 * 23 21 19 27 27 C 1.47424 * 125.64722 * 180.02562 * 14 12 8 28 28 C 1.38172 * 120.05419 * 359.68061 * 7 6 5 29 29 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.03283 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.96622 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.94205 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47113 * 60.00174 * 11 10 8 36 36 H 1.09004 * 109.46966 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.47352 * 299.99100 * 11 10 8 38 38 H 1.08998 * 109.88285 * 298.40189 * 15 14 12 39 39 H 1.08996 * 109.88277 * 59.56303 * 15 14 12 40 40 H 1.09007 * 110.84924 * 219.67289 * 16 15 14 41 41 H 1.09003 * 110.51861 * 96.45267 * 16 15 14 42 42 H 0.96702 * 114.00567 * 292.19788 * 18 17 16 43 43 H 0.97003 * 120.00230 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36455 * 322.92470 * 27 14 12 45 45 H 1.09001 * 110.36924 * 85.13960 * 27 14 12 46 46 H 1.08007 * 120.02613 * 180.29824 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0021 8 6 5.5608 2.5984 -0.0045 9 1 5.9760 1.6539 0.3469 10 8 5.9821 3.6550 0.8604 11 6 7.2564 3.4350 1.4686 12 6 6.0470 2.8711 -1.4045 13 8 6.6119 3.9139 -1.6580 14 7 5.8540 1.9561 -2.3751 15 6 5.1931 0.6537 -2.2058 16 6 5.1766 -0.0346 -3.5870 17 6 5.3310 1.1543 -4.5719 18 8 4.0717 1.7836 -4.8166 19 6 5.9685 0.7083 -5.8626 20 1 6.9602 1.0491 -6.1211 21 6 5.2857 -0.1348 -6.7134 22 7 4.0779 -0.5494 -6.3989 23 14 6.0756 -0.6871 -8.3136 24 1 7.3340 -1.4180 -8.0180 25 1 5.1427 -1.5835 -9.0425 26 1 6.3782 0.5007 -9.1519 27 6 6.2768 2.0924 -3.7808 28 6 3.4310 1.2849 0.0056 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0005 33 1 1.3338 4.5114 0.0008 34 1 3.7921 4.6383 -0.0024 35 1 8.0158 3.3316 0.6937 36 1 7.5043 4.2815 2.1091 37 1 7.2212 2.5246 2.0668 38 1 5.7498 0.0454 -1.4929 39 1 4.1718 0.7992 -1.8539 40 1 4.2311 -0.5515 -3.7516 41 1 6.0157 -0.7242 -3.6803 42 1 3.4465 1.2343 -5.3090 43 1 3.5976 -1.1428 -6.9973 44 1 6.1557 3.1228 -4.1151 45 1 7.3132 1.7757 -3.8977 46 1 4.0207 0.3800 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597801348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:04 Heat of formation + Delta-G solvation = -125.194730 kcal Electronic energy + Delta-G solvation = -30547.935754 eV Core-core repulsion = 26403.760418 eV Total energy + Delta-G solvation = -4144.175336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54319 -39.53052 -38.05067 -37.21324 -36.55302 -34.33400 -32.17451 -32.10331 -30.54020 -29.74609 -28.36120 -27.59861 -27.20719 -26.06181 -24.67974 -22.69987 -22.29652 -21.34819 -19.78407 -18.99385 -18.13996 -17.33096 -16.83158 -16.64162 -16.07750 -15.78554 -15.66279 -15.58454 -14.98799 -14.89966 -14.82356 -14.30306 -13.89740 -13.75901 -13.49118 -13.34306 -12.99764 -12.80364 -12.60603 -12.23276 -12.04590 -11.88578 -11.75959 -11.47844 -11.40357 -11.32930 -11.25844 -11.11068 -10.91009 -10.68944 -10.61918 -10.52393 -10.38623 -10.03898 -9.45573 -9.24694 -8.72149 -8.58378 -8.22573 -8.15812 -7.90096 -6.29909 -4.37883 1.23883 1.51515 2.89481 3.20922 3.21289 3.25898 3.28825 3.41320 3.66635 4.04541 4.25940 4.66513 4.76238 4.86537 4.94277 5.01098 5.03856 5.06223 5.10297 5.31539 5.37935 5.40545 5.44963 5.49812 5.56006 5.63394 5.67808 5.74567 5.87731 5.94802 6.06626 6.27743 6.28989 6.44618 6.47286 6.54104 6.65255 6.72619 6.88357 6.92944 7.06646 7.30712 7.33264 7.38629 7.73272 7.98851 8.11577 8.59597 8.64958 9.31174 9.49442 10.77646 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.004385 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.825882 B = 6384.190926 C = 8187.306327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.126 3.874 4 C -0.199 4.199 5 C -0.083 4.083 6 C -0.118 4.118 7 C -0.047 4.047 8 C 0.122 3.878 9 H 0.091 0.909 10 O -0.353 6.353 11 C 0.030 3.970 12 C 0.506 3.494 13 O -0.538 6.538 14 N -0.598 5.598 15 C 0.084 3.916 16 C -0.138 4.138 17 C 0.251 3.749 18 O -0.583 6.583 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.904 3.096 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.119 3.881 28 C -0.133 4.133 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.385 0.615 43 H 0.270 0.730 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 0.265 15.622 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.081 3.919 4 C -0.218 4.218 5 C -0.101 4.101 6 C -0.136 4.136 7 C -0.048 4.048 8 C 0.060 3.940 9 H 0.109 0.891 10 O -0.270 6.270 11 C -0.066 4.066 12 C 0.292 3.708 13 O -0.416 6.416 14 N -0.331 5.331 15 C -0.038 4.038 16 C -0.177 4.177 17 C 0.210 3.790 18 O -0.393 6.393 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.129 4.129 22 N -0.537 5.537 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.003 4.003 28 C -0.152 4.152 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.237 0.763 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.440 1.223 15.851 16.507 hybrid contribution 0.031 -1.053 -1.273 1.652 sum -4.410 0.170 14.579 15.232 Atomic orbital electron populations 1.23044 0.78464 1.03891 1.01270 1.86073 1.21301 1.26680 1.88794 1.18768 0.91889 0.84295 0.96995 1.21248 0.99961 0.92425 1.08163 1.20906 0.94357 0.97055 0.97794 1.20906 0.93493 0.98472 1.00754 1.19024 0.92411 0.93183 1.00166 1.20659 0.92023 0.92083 0.89215 0.89140 1.87962 1.35901 1.42676 1.60496 1.22861 0.85150 1.01568 0.97068 1.20512 0.80247 0.83611 0.86407 1.90668 1.43439 1.25166 1.82318 1.48603 1.56508 1.17777 1.10247 1.22654 0.97130 0.83615 1.00404 1.23201 1.02909 0.99698 0.91863 1.19544 0.82116 0.86030 0.91262 1.86109 1.26991 1.47265 1.78914 1.21448 1.02789 1.29022 1.04197 0.91716 1.24980 0.94830 0.94788 0.98311 1.69558 1.11763 1.34571 1.37792 0.86463 0.79098 0.78624 0.82722 1.20050 1.21098 1.19980 1.22413 0.97947 1.01492 0.78408 1.20154 0.91800 0.97611 1.05609 0.92467 0.92886 0.88282 0.85468 0.85593 0.85211 0.93480 0.89176 0.93979 0.93120 0.90691 0.89827 0.91495 0.76321 0.92026 0.91106 0.91112 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.16 10.50 -19.44 -0.20 -4.36 16 3 C 0.13 1.77 6.69 -39.22 -0.26 1.51 16 4 C -0.20 -2.54 9.04 -39.43 -0.36 -2.90 16 5 C -0.08 -1.09 10.04 -39.60 -0.40 -1.49 16 6 C -0.12 -1.80 9.35 -39.56 -0.37 -2.17 16 7 C -0.05 -0.73 4.51 -104.64 -0.47 -1.20 16 8 C 0.12 1.93 2.20 -29.03 -0.06 1.87 16 9 H 0.09 1.21 7.64 -51.93 -0.40 0.81 16 10 O -0.35 -5.48 9.21 -55.09 -0.51 -5.99 16 11 C 0.03 0.35 10.81 101.05 1.09 1.45 16 12 C 0.51 10.04 7.17 -10.99 -0.08 9.96 16 13 O -0.54 -12.35 16.76 -14.30 -0.24 -12.59 16 14 N -0.60 -12.19 3.32 -170.51 -0.57 -12.76 16 15 C 0.08 1.56 5.29 -3.06 -0.02 1.55 16 16 C -0.14 -2.98 5.64 -24.89 -0.14 -3.12 16 17 C 0.25 6.12 0.89 -89.61 -0.08 6.04 16 18 O -0.58 -15.22 13.18 -35.23 -0.46 -15.69 16 19 C -0.54 -13.94 8.25 -34.44 -0.28 -14.22 16 20 H 0.06 1.67 7.77 -52.49 -0.41 1.26 16 21 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 22 N -0.90 -23.04 10.79 55.43 0.60 -22.44 16 23 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.12 2.71 6.08 -2.52 -0.02 2.70 16 28 C -0.13 -1.94 6.65 -39.43 -0.26 -2.21 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 33 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 2.02 7.77 -52.48 -0.41 1.61 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.08 1.38 4.60 -51.93 -0.24 1.14 16 40 H 0.08 1.90 7.85 -51.92 -0.41 1.50 16 41 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 42 H 0.38 10.13 6.93 45.56 0.32 10.44 16 43 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 44 H 0.07 1.73 8.04 -51.93 -0.42 1.32 16 45 H 0.07 1.55 8.02 -51.93 -0.42 1.13 16 46 H 0.13 1.79 7.00 -52.48 -0.37 1.42 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -30.98 374.57 -7.52 -38.51 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.95 Total: 13.84 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.81 Total: 0.78 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.03 Total: -35.20 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.42 Total: -38.63 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.98 -7.52 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.689 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds