Wall clock time and date at job start Tue Mar 31 2020 18:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38749 * 120.05570 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94051 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05778 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11154 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.97282 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.47037 * 159.99887 * 8 7 6 10 10 O 1.42899 * 109.46657 * 40.00391 * 8 7 6 11 11 C 1.42903 * 113.99659 * 150.00091 * 10 8 7 12 12 C 1.50695 * 109.47344 * 280.00146 * 8 7 6 13 13 O 1.21279 * 120.00453 * 114.99453 * 12 8 7 14 14 N 1.34782 * 119.99928 * 295.00374 * 12 8 7 15 15 C 1.47019 * 125.64799 * 359.68494 * 14 12 8 16 16 C 1.54331 * 107.26453 * 178.85634 * 15 14 12 17 17 C 1.55155 * 103.02095 * 338.13934 * 16 15 14 18 18 O 1.42895 * 111.00603 * 277.23364 * 17 16 15 19 19 C 1.50705 * 111.03721 * 153.39733 * 17 16 15 20 20 H 1.08000 * 119.99905 * 247.78597 * 19 17 16 21 21 C 1.37874 * 119.99872 * 67.78596 * 19 17 16 22 22 N 1.31513 * 120.00105 * 0.02562 * 21 19 17 23 23 Si 1.86805 * 119.99846 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46865 * 60.00387 * 23 21 19 25 25 H 1.48499 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.46833 * 300.00182 * 23 21 19 27 27 C 1.47424 * 125.64722 * 180.02562 * 14 12 8 28 28 C 1.38172 * 120.05419 * 359.68061 * 7 6 5 29 29 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.03283 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.96622 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.94205 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47113 * 60.00174 * 11 10 8 36 36 H 1.09004 * 109.46966 * 179.97438 * 11 10 8 37 37 H 1.08991 * 109.47352 * 299.99100 * 11 10 8 38 38 H 1.08998 * 109.88285 * 298.40189 * 15 14 12 39 39 H 1.08996 * 109.88277 * 59.56303 * 15 14 12 40 40 H 1.09007 * 110.84924 * 219.67289 * 16 15 14 41 41 H 1.09003 * 110.51861 * 96.45267 * 16 15 14 42 42 H 0.96702 * 114.00567 * 292.19788 * 18 17 16 43 43 H 0.97003 * 120.00230 * 180.02562 * 22 21 19 44 44 H 1.08999 * 110.36455 * 322.92470 * 27 14 12 45 45 H 1.09001 * 110.36924 * 85.13960 * 27 14 12 46 46 H 1.08007 * 120.02613 * 180.29824 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5173 -0.0021 8 6 5.5608 2.5984 -0.0045 9 1 5.9760 1.6539 0.3469 10 8 5.9821 3.6550 0.8604 11 6 7.2564 3.4350 1.4686 12 6 6.0470 2.8711 -1.4045 13 8 6.6119 3.9139 -1.6580 14 7 5.8540 1.9561 -2.3751 15 6 5.1931 0.6537 -2.2058 16 6 5.1766 -0.0346 -3.5870 17 6 5.3310 1.1543 -4.5719 18 8 4.0717 1.7836 -4.8166 19 6 5.9685 0.7083 -5.8626 20 1 6.9602 1.0491 -6.1211 21 6 5.2857 -0.1348 -6.7134 22 7 4.0779 -0.5494 -6.3989 23 14 6.0756 -0.6871 -8.3136 24 1 7.3340 -1.4180 -8.0180 25 1 5.1427 -1.5835 -9.0425 26 1 6.3782 0.5007 -9.1519 27 6 6.2768 2.0924 -3.7808 28 6 3.4310 1.2849 0.0056 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2127 2.3204 0.0005 33 1 1.3338 4.5114 0.0008 34 1 3.7921 4.6383 -0.0024 35 1 8.0158 3.3316 0.6937 36 1 7.5043 4.2815 2.1091 37 1 7.2212 2.5246 2.0668 38 1 5.7498 0.0454 -1.4929 39 1 4.1718 0.7992 -1.8539 40 1 4.2311 -0.5515 -3.7516 41 1 6.0157 -0.7242 -3.6803 42 1 3.4465 1.2343 -5.3090 43 1 3.5976 -1.1428 -6.9973 44 1 6.1557 3.1228 -4.1151 45 1 7.3132 1.7757 -3.8977 46 1 4.0207 0.3800 0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597801348.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:03 Heat of formation + Delta-G solvation = -146.062619 kcal Electronic energy + Delta-G solvation = -30548.840653 eV Core-core repulsion = 26403.760418 eV Total energy + Delta-G solvation = -4145.080236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80011 -40.75381 -39.52580 -38.48011 -37.86804 -36.14584 -34.13701 -33.31818 -31.73325 -31.25486 -30.04038 -28.75871 -28.03129 -27.42993 -26.26663 -24.04795 -23.55840 -22.51132 -21.59333 -20.49310 -19.29896 -19.12735 -18.23238 -17.89212 -17.15128 -17.02623 -16.94384 -16.72455 -16.58250 -16.29814 -16.19510 -15.98088 -15.28895 -14.91528 -14.77998 -14.71271 -14.42229 -13.99652 -13.90277 -13.78845 -13.49581 -13.37409 -13.21655 -13.02325 -12.81920 -12.59509 -12.55768 -12.48769 -12.36506 -12.27990 -12.03805 -11.87923 -11.74379 -11.65461 -11.31836 -10.67543 -10.54041 -10.15040 -9.84407 -9.59669 -9.13614 -8.24604 -6.39652 0.17411 0.44977 1.42806 1.44324 1.45992 1.52935 1.86370 2.32423 2.40322 2.59944 2.90284 3.00278 3.47319 3.56046 3.75328 3.81736 3.91108 4.01298 4.11072 4.28418 4.31769 4.32874 4.35795 4.45282 4.46509 4.51204 4.52995 4.58818 4.61881 4.67634 4.78455 4.80522 4.86680 4.94702 5.14844 5.22583 5.25115 5.40666 5.43517 5.48327 5.50833 5.70450 5.77041 5.94285 6.05232 6.44917 6.53774 6.63748 7.03997 7.31662 7.45378 8.81626 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010948 B = 0.004385 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.825882 B = 6384.190926 C = 8187.306327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.118 3.882 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.061 4.061 8 C 0.132 3.868 9 H 0.121 0.879 10 O -0.371 6.371 11 C 0.022 3.978 12 C 0.501 3.499 13 O -0.578 6.578 14 N -0.600 5.600 15 C 0.092 3.908 16 C -0.128 4.128 17 C 0.238 3.762 18 O -0.595 6.595 19 C -0.563 4.563 20 H 0.057 0.943 21 C 0.038 3.962 22 N -0.909 5.909 23 Si 0.961 3.039 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.123 3.877 28 C -0.143 4.143 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.032 0.968 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.380 0.620 43 H 0.273 0.727 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.701 -1.112 16.924 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.072 3.928 4 C -0.216 4.216 5 C -0.101 4.101 6 C -0.159 4.159 7 C -0.062 4.062 8 C 0.071 3.929 9 H 0.138 0.862 10 O -0.288 6.288 11 C -0.074 4.074 12 C 0.289 3.711 13 O -0.458 6.458 14 N -0.333 5.333 15 C -0.030 4.030 16 C -0.167 4.167 17 C 0.198 3.802 18 O -0.406 6.406 19 C -0.601 4.601 20 H 0.075 0.925 21 C -0.164 4.164 22 N -0.549 5.549 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.205 1.205 27 C 0.000 4.000 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.136 0.864 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.292 -0.170 17.181 17.979 hybrid contribution 0.224 -0.594 -1.672 1.789 sum -5.068 -0.764 15.510 16.334 Atomic orbital electron populations 1.23359 0.76402 1.05628 1.02257 1.86055 1.23491 1.26314 1.88600 1.18969 0.92062 0.85119 0.96625 1.21585 1.01445 0.91742 1.06867 1.21207 0.93740 0.98444 0.96751 1.21000 0.94681 0.98058 1.02200 1.19061 0.92112 0.93736 1.01270 1.20606 0.92487 0.93340 0.86465 0.86186 1.87956 1.37415 1.43179 1.60234 1.23111 0.83305 1.03935 0.97013 1.21402 0.79182 0.82653 0.87814 1.90637 1.45188 1.26727 1.83289 1.48657 1.56637 1.18728 1.09266 1.22699 0.98118 0.82832 0.99324 1.22992 1.02132 0.98647 0.92908 1.19732 0.81434 0.87358 0.91708 1.86098 1.27693 1.47851 1.78909 1.21677 1.02917 1.29908 1.05633 0.92456 1.25606 0.95303 0.94643 1.00800 1.69622 1.12283 1.34440 1.38517 0.85565 0.78547 0.77999 0.79222 1.19436 1.20385 1.20460 1.22206 0.98073 0.99504 0.80180 1.20292 0.92488 0.97558 1.05834 0.92299 0.90983 0.86357 0.82670 0.83160 0.86509 0.94879 0.87292 0.91138 0.89158 0.90178 0.91136 0.91418 0.76819 0.91769 0.93891 0.90576 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.99 10.50 -92.47 -0.97 -8.96 16 3 C 0.12 3.08 6.69 22.50 0.15 3.23 16 4 C -0.20 -4.60 9.04 22.37 0.20 -4.40 16 5 C -0.08 -2.07 10.04 22.25 0.22 -1.85 16 6 C -0.14 -4.24 9.35 22.28 0.21 -4.04 16 7 C -0.06 -1.84 4.51 -19.88 -0.09 -1.93 16 8 C 0.13 4.05 2.20 29.10 0.06 4.12 16 9 H 0.12 2.89 7.64 -2.39 -0.02 2.87 16 10 O -0.37 -11.21 9.21 -129.99 -1.20 -12.41 16 11 C 0.02 0.49 10.81 113.37 1.23 1.71 16 12 C 0.50 19.90 7.17 87.65 0.63 20.53 16 13 O -0.58 -27.23 16.76 15.96 0.27 -26.96 16 14 N -0.60 -24.38 3.32 -811.76 -2.70 -27.07 16 15 C 0.09 3.27 5.29 86.73 0.46 3.73 16 16 C -0.13 -5.48 5.64 31.78 0.18 -5.30 16 17 C 0.24 11.76 0.89 -10.14 -0.01 11.75 16 18 O -0.60 -31.82 13.18 -148.98 -1.96 -33.78 16 19 C -0.56 -29.65 8.25 25.60 0.21 -29.44 16 20 H 0.06 3.01 7.77 -2.91 -0.02 2.99 16 21 C 0.04 1.92 5.30 84.65 0.45 2.36 16 22 N -0.91 -46.56 10.79 21.45 0.23 -46.33 16 23 Si 0.96 40.95 29.54 68.60 2.03 42.97 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.12 5.75 6.08 86.86 0.53 6.28 16 28 C -0.14 -3.93 6.65 22.37 0.15 -3.78 16 29 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 31 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.16 2.61 6.30 -2.91 -0.02 2.60 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.12 3.72 7.77 -2.91 -0.02 3.70 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 38 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 39 H 0.08 2.83 4.60 -2.39 -0.01 2.82 16 40 H 0.07 3.19 7.85 -2.38 -0.02 3.17 16 41 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 42 H 0.38 20.46 6.93 -74.06 -0.51 19.95 16 43 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 44 H 0.04 2.20 8.04 -2.39 -0.02 2.18 16 45 H 0.08 3.41 8.02 -2.39 -0.02 3.39 16 46 H 0.15 3.53 7.00 -2.91 -0.02 3.51 16 Total: -1.00 -67.93 374.57 1.88 -66.06 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: 0.49 Total: 42.11 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.69 Total: 4.37 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -2.47 Total: -73.41 kcal Atomic # 8 Polarization: -78.24 SS G_CDS: -3.86 Total: -82.11 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.97 kcal Total: -67.93 1.88 -66.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801348.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.006 kcal (2) G-P(sol) polarization free energy of solvation -67.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds