Wall clock time and date at job start Tue Mar 31 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00110 * 2 1 4 4 C 1.38751 * 120.05736 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94077 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05547 * 359.74390 * 5 4 3 7 7 C 1.38242 * 120.11392 * 0.51570 * 6 5 4 8 8 C 1.50705 * 119.97322 * 179.76796 * 7 6 5 9 9 H 1.09002 * 109.46990 * 197.13623 * 8 7 6 10 10 O 1.42899 * 109.46441 * 317.13470 * 8 7 6 11 11 C 1.42905 * 113.99909 * 269.99636 * 10 8 7 12 12 C 1.50694 * 109.47277 * 77.13497 * 8 7 6 13 13 O 1.21285 * 120.00014 * 250.46760 * 12 8 7 14 14 N 1.34776 * 120.00129 * 70.46518 * 12 8 7 15 15 C 1.47016 * 125.64882 * 175.20380 * 14 12 8 16 16 C 1.54372 * 107.29167 * 181.12856 * 15 14 12 17 17 C 1.55154 * 102.91662 * 22.14111 * 16 15 14 18 18 O 1.42906 * 111.00650 * 82.63985 * 17 16 15 19 19 C 1.50699 * 111.00716 * 206.45403 * 17 16 15 20 20 H 1.07999 * 120.00695 * 115.41552 * 19 17 16 21 21 C 1.37880 * 119.99753 * 295.14591 * 19 17 16 22 22 N 1.31519 * 120.00228 * 0.27170 * 21 19 17 23 23 Si 1.86806 * 120.00064 * 180.27029 * 21 19 17 24 24 H 1.48504 * 109.46824 * 89.99995 * 23 21 19 25 25 H 1.48493 * 109.47217 * 209.99545 * 23 21 19 26 26 H 1.48496 * 109.46876 * 329.99887 * 23 21 19 27 27 C 1.47423 * 125.64841 * 355.25229 * 14 12 8 28 28 C 1.38160 * 120.05460 * 359.48241 * 7 6 5 29 29 H 1.09004 * 109.46748 * 59.99888 * 1 2 3 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46852 * 300.00287 * 1 2 3 32 32 H 1.07995 * 120.02800 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.96745 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.94158 * 180.27425 * 6 5 4 35 35 H 1.08998 * 109.46790 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47189 * 300.00579 * 11 10 8 37 37 H 1.08995 * 109.46743 * 60.01195 * 11 10 8 38 38 H 1.09001 * 109.88520 * 300.51433 * 15 14 12 39 39 H 1.09005 * 109.88576 * 61.67668 * 15 14 12 40 40 H 1.09002 * 110.70660 * 263.79763 * 16 15 14 41 41 H 1.09002 * 110.75869 * 140.50617 * 16 15 14 42 42 H 0.96698 * 114.00069 * 64.58128 * 18 17 16 43 43 H 0.96996 * 119.99908 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.36909 * 36.98994 * 27 14 12 45 45 H 1.09010 * 110.36394 * 274.66873 * 27 14 12 46 46 H 1.07998 * 120.03071 * 180.23604 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0064 7 6 4.0562 2.5169 0.0005 8 6 5.5610 2.5979 0.0011 9 1 5.9766 1.6383 -0.3067 10 8 5.9836 3.6143 -0.9102 11 6 6.2033 3.1458 -2.2423 12 6 6.0455 2.9335 1.3879 13 8 6.5207 4.0258 1.6165 14 7 5.9508 2.0201 2.3744 15 6 6.4716 2.1768 3.7402 16 6 6.1575 0.8723 4.5036 17 6 5.9787 -0.1631 3.3620 18 8 7.2427 -0.6635 2.9215 19 6 5.0748 -1.2899 3.7913 20 1 4.1239 -1.4364 3.3008 21 6 5.4644 -2.1374 4.8068 22 7 6.6224 -1.9591 5.4043 23 14 4.3474 -3.5388 5.3340 24 1 4.6643 -4.7510 4.5368 25 1 4.5592 -3.8251 6.7756 26 1 2.9309 -3.1543 5.1085 27 6 5.3086 0.6978 2.2621 28 6 3.4313 1.2847 0.0000 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2130 2.3204 0.0005 33 1 1.3343 4.5113 0.0019 34 1 3.7925 4.6378 0.0113 35 1 6.5219 3.9768 -2.8716 36 1 6.9775 2.3786 -2.2346 37 1 5.2784 2.7249 -2.6365 38 1 7.5493 2.3375 3.7099 39 1 5.9827 3.0196 4.2290 40 1 5.2375 0.9745 5.0791 41 1 6.9894 0.5933 5.1503 42 1 7.7218 -1.1678 3.5933 43 1 6.8965 -2.5555 6.1184 44 1 5.4947 0.2680 1.2779 45 1 4.2371 0.7797 2.4448 46 1 4.0207 0.3797 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597801350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:12 Heat of formation + Delta-G solvation = -127.737887 kcal Electronic energy + Delta-G solvation = -30565.147381 eV Core-core repulsion = 26420.861766 eV Total energy + Delta-G solvation = -4144.285616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50939 -39.51420 -38.13354 -37.13572 -36.66503 -34.24016 -32.20520 -32.14324 -30.48050 -29.81751 -28.36470 -27.67124 -27.28278 -25.68015 -24.99878 -22.61339 -22.42301 -21.20943 -19.85504 -18.98485 -18.14554 -17.22346 -17.02769 -16.26152 -16.09038 -15.78951 -15.72413 -15.64316 -15.24664 -14.99468 -14.70621 -14.24749 -13.89744 -13.74109 -13.55632 -13.44083 -12.94292 -12.74756 -12.58936 -12.25649 -12.11864 -11.93079 -11.83750 -11.66777 -11.40632 -11.31580 -11.16129 -11.12331 -10.92131 -10.82079 -10.58863 -10.48305 -10.05684 -9.98364 -9.50436 -9.38660 -8.78923 -8.67221 -8.24100 -8.18591 -7.98000 -6.31289 -4.39371 1.21087 1.48061 2.96950 3.05798 3.18092 3.25821 3.28595 3.32349 3.69988 4.17222 4.27374 4.62490 4.74238 4.94129 4.96768 4.97788 5.03881 5.06451 5.10444 5.35039 5.37510 5.38519 5.41886 5.51483 5.56211 5.58194 5.64556 5.81028 5.94159 5.98320 6.01494 6.21376 6.29634 6.30871 6.42363 6.53547 6.56969 6.70302 6.88423 6.92881 7.11626 7.28909 7.33019 7.39007 7.71279 7.95557 8.07409 8.60814 8.63223 9.28612 9.38712 10.76403 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.004934 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.945634 B = 5673.120979 C = 7650.345291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.127 3.873 4 C -0.203 4.203 5 C -0.086 4.086 6 C -0.123 4.123 7 C -0.073 4.073 8 C 0.119 3.881 9 H 0.095 0.905 10 O -0.352 6.352 11 C 0.027 3.973 12 C 0.533 3.467 13 O -0.536 6.536 14 N -0.601 5.601 15 C 0.110 3.890 16 C -0.138 4.138 17 C 0.249 3.751 18 O -0.585 6.585 19 C -0.535 4.535 20 H 0.066 0.934 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.112 3.888 28 C -0.133 4.133 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.385 0.615 43 H 0.269 0.731 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 5.618 -11.123 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.082 3.918 4 C -0.222 4.222 5 C -0.104 4.104 6 C -0.141 4.141 7 C -0.074 4.074 8 C 0.058 3.942 9 H 0.113 0.887 10 O -0.269 6.269 11 C -0.069 4.069 12 C 0.320 3.680 13 O -0.413 6.413 14 N -0.334 5.334 15 C -0.011 4.011 16 C -0.177 4.177 17 C 0.208 3.792 18 O -0.394 6.394 19 C -0.574 4.574 20 H 0.084 0.916 21 C -0.129 4.129 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.010 4.010 28 C -0.152 4.152 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.236 0.764 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.794 6.492 -11.411 15.802 hybrid contribution -0.769 -1.284 0.825 1.709 sum -9.563 5.207 -10.586 15.187 Atomic orbital electron populations 1.23043 0.78589 1.03947 1.01097 1.86124 1.21168 1.26635 1.88628 1.18871 0.92033 0.84259 0.96647 1.21253 0.99905 0.92449 1.08566 1.20894 0.94358 0.96955 0.98168 1.20916 0.93426 0.98486 1.01288 1.19760 0.94423 0.93076 1.00163 1.20678 0.90528 0.93087 0.89943 0.88734 1.88021 1.87538 1.32640 1.18717 1.22894 0.99904 1.00686 0.83437 1.19539 0.79443 0.84108 0.84954 1.90663 1.46070 1.22019 1.82587 1.48484 1.56152 1.17304 1.11485 1.22069 0.98244 0.99505 0.81328 1.23225 1.02444 0.92760 0.99230 1.19585 0.82757 0.89833 0.86994 1.86083 1.33979 1.74376 1.44984 1.21441 1.04378 1.13010 1.18521 0.91613 1.24979 0.95290 0.97440 0.95189 1.69649 1.20497 1.38431 1.24885 0.86433 0.80904 0.82038 0.77717 1.20385 1.21077 1.19701 1.22688 0.96593 0.80996 1.00716 1.20410 0.91815 0.98040 1.04933 0.92921 0.88235 0.92627 0.85555 0.85724 0.85245 0.89196 0.93643 0.93772 0.92296 0.92801 0.91394 0.89605 0.76423 0.92121 0.91558 0.90524 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.28 10.50 -19.42 -0.20 -4.48 16 3 C 0.13 1.79 6.69 -39.21 -0.26 1.53 16 4 C -0.20 -2.47 9.04 -39.43 -0.36 -2.82 16 5 C -0.09 -1.05 10.04 -39.60 -0.40 -1.45 16 6 C -0.12 -1.77 9.33 -39.56 -0.37 -2.14 16 7 C -0.07 -1.12 4.57 -104.65 -0.48 -1.60 16 8 C 0.12 1.97 2.08 -29.04 -0.06 1.91 16 9 H 0.09 1.45 6.94 -51.93 -0.36 1.09 16 10 O -0.35 -5.64 9.33 -54.92 -0.51 -6.15 16 11 C 0.03 0.31 10.81 101.05 1.09 1.41 16 12 C 0.53 10.75 7.14 -10.99 -0.08 10.67 16 13 O -0.54 -12.30 16.87 -14.14 -0.24 -12.54 16 14 N -0.60 -12.27 3.33 -170.49 -0.57 -12.84 16 15 C 0.11 2.27 6.87 -3.04 -0.02 2.25 16 16 C -0.14 -3.03 5.52 -24.87 -0.14 -3.17 16 17 C 0.25 5.81 0.88 -89.63 -0.08 5.73 16 18 O -0.58 -14.40 13.17 -35.23 -0.46 -14.86 16 19 C -0.54 -13.42 8.25 -34.44 -0.28 -13.70 16 20 H 0.07 1.64 7.78 -52.49 -0.41 1.23 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 22 N -0.90 -22.66 10.76 55.43 0.60 -22.06 16 23 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 27 C 0.11 2.30 4.32 -2.53 -0.01 2.29 16 28 C -0.13 -2.00 7.58 -39.43 -0.30 -2.30 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.91 7.86 -52.49 -0.41 1.50 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.50 8.03 -51.93 -0.42 1.08 16 41 H 0.09 1.97 7.69 -51.93 -0.40 1.58 16 42 H 0.38 9.62 7.24 45.56 0.33 9.95 16 43 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.07 1.29 5.71 -51.93 -0.30 1.00 16 45 H 0.08 1.56 7.32 -51.92 -0.38 1.18 16 46 H 0.14 2.06 6.54 -52.49 -0.34 1.72 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -30.02 374.92 -7.51 -37.53 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -5.91 Total: 13.45 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.84 Total: 1.60 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.03 Total: -34.90 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.42 Total: -38.04 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.02 -7.51 -37.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.207 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds