Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 117.00110 * 2 1 4 4 C 1.38751 * 120.05736 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94077 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05547 * 359.74390 * 5 4 3 7 7 C 1.38242 * 120.11392 * 0.51570 * 6 5 4 8 8 C 1.50705 * 119.97322 * 179.76796 * 7 6 5 9 9 H 1.09002 * 109.46990 * 197.13623 * 8 7 6 10 10 O 1.42899 * 109.46441 * 317.13470 * 8 7 6 11 11 C 1.42905 * 113.99909 * 269.99636 * 10 8 7 12 12 C 1.50694 * 109.47277 * 77.13497 * 8 7 6 13 13 O 1.21285 * 120.00014 * 250.46760 * 12 8 7 14 14 N 1.34776 * 120.00129 * 70.46518 * 12 8 7 15 15 C 1.47016 * 125.64882 * 175.20380 * 14 12 8 16 16 C 1.54372 * 107.29167 * 181.12856 * 15 14 12 17 17 C 1.55154 * 102.91662 * 22.14111 * 16 15 14 18 18 O 1.42906 * 111.00650 * 82.63985 * 17 16 15 19 19 C 1.50699 * 111.00716 * 206.45403 * 17 16 15 20 20 H 1.07999 * 120.00695 * 115.41552 * 19 17 16 21 21 C 1.37880 * 119.99753 * 295.14591 * 19 17 16 22 22 N 1.31519 * 120.00228 * 0.27170 * 21 19 17 23 23 Si 1.86806 * 120.00064 * 180.27029 * 21 19 17 24 24 H 1.48504 * 109.46824 * 89.99995 * 23 21 19 25 25 H 1.48493 * 109.47217 * 209.99545 * 23 21 19 26 26 H 1.48496 * 109.46876 * 329.99887 * 23 21 19 27 27 C 1.47423 * 125.64841 * 355.25229 * 14 12 8 28 28 C 1.38160 * 120.05460 * 359.48241 * 7 6 5 29 29 H 1.09004 * 109.46748 * 59.99888 * 1 2 3 30 30 H 1.08998 * 109.47462 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46852 * 300.00287 * 1 2 3 32 32 H 1.07995 * 120.02800 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.96745 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.94158 * 180.27425 * 6 5 4 35 35 H 1.08998 * 109.46790 * 180.02562 * 11 10 8 36 36 H 1.08998 * 109.47189 * 300.00579 * 11 10 8 37 37 H 1.08995 * 109.46743 * 60.01195 * 11 10 8 38 38 H 1.09001 * 109.88520 * 300.51433 * 15 14 12 39 39 H 1.09005 * 109.88576 * 61.67668 * 15 14 12 40 40 H 1.09002 * 110.70660 * 263.79763 * 16 15 14 41 41 H 1.09002 * 110.75869 * 140.50617 * 16 15 14 42 42 H 0.96698 * 114.00069 * 64.58128 * 18 17 16 43 43 H 0.96996 * 119.99908 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.36909 * 36.98994 * 27 14 12 45 45 H 1.09010 * 110.36394 * 274.66873 * 27 14 12 46 46 H 1.07998 * 120.03071 * 180.23604 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0064 7 6 4.0562 2.5169 0.0005 8 6 5.5610 2.5979 0.0011 9 1 5.9766 1.6383 -0.3067 10 8 5.9836 3.6143 -0.9102 11 6 6.2033 3.1458 -2.2423 12 6 6.0455 2.9335 1.3879 13 8 6.5207 4.0258 1.6165 14 7 5.9508 2.0201 2.3744 15 6 6.4716 2.1768 3.7402 16 6 6.1575 0.8723 4.5036 17 6 5.9787 -0.1631 3.3620 18 8 7.2427 -0.6635 2.9215 19 6 5.0748 -1.2899 3.7913 20 1 4.1239 -1.4364 3.3008 21 6 5.4644 -2.1374 4.8068 22 7 6.6224 -1.9591 5.4043 23 14 4.3474 -3.5388 5.3340 24 1 4.6643 -4.7510 4.5368 25 1 4.5592 -3.8251 6.7756 26 1 2.9309 -3.1543 5.1085 27 6 5.3086 0.6978 2.2621 28 6 3.4313 1.2847 0.0000 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2130 2.3204 0.0005 33 1 1.3343 4.5113 0.0019 34 1 3.7925 4.6378 0.0113 35 1 6.5219 3.9768 -2.8716 36 1 6.9775 2.3786 -2.2346 37 1 5.2784 2.7249 -2.6365 38 1 7.5493 2.3375 3.7099 39 1 5.9827 3.0196 4.2290 40 1 5.2375 0.9745 5.0791 41 1 6.9894 0.5933 5.1503 42 1 7.7218 -1.1678 3.5933 43 1 6.8965 -2.5555 6.1184 44 1 5.4947 0.2680 1.2779 45 1 4.2371 0.7797 2.4448 46 1 4.0207 0.3797 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597801350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = -147.359100 kcal Electronic energy + Delta-G solvation = -30565.998221 eV Core-core repulsion = 26420.861766 eV Total energy + Delta-G solvation = -4145.136455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76922 -40.77800 -39.54325 -38.57684 -37.85423 -36.04534 -34.14437 -33.33400 -31.67505 -31.25867 -30.08254 -28.81193 -28.09380 -27.05643 -26.57705 -23.97374 -23.64175 -22.39312 -21.67372 -20.49519 -19.33453 -18.96281 -18.36307 -17.62278 -17.21958 -17.05090 -16.93121 -16.84921 -16.60318 -16.44388 -16.17394 -15.93136 -15.28384 -14.93056 -14.83608 -14.61984 -14.45971 -14.03732 -13.93144 -13.65970 -13.58073 -13.43927 -13.19317 -12.99569 -12.82457 -12.72212 -12.62151 -12.46997 -12.32071 -12.22309 -12.01562 -11.90591 -11.83579 -11.40621 -11.13258 -10.76369 -10.61133 -10.14562 -9.89291 -9.68738 -9.18675 -8.21627 -6.36087 0.16334 0.43870 1.43327 1.44745 1.47923 1.56060 1.66852 2.36740 2.41509 2.64612 2.91277 3.03574 3.48774 3.54877 3.71750 3.79836 3.91568 4.08379 4.12763 4.21690 4.28320 4.30339 4.33054 4.43618 4.47639 4.50348 4.51801 4.56430 4.60313 4.61162 4.76554 4.80099 4.84263 4.95905 5.12890 5.22749 5.26199 5.39774 5.42944 5.48026 5.50462 5.71043 5.79024 5.96660 6.06274 6.44247 6.46507 6.69034 7.00661 7.33963 7.42177 8.84758 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.004934 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.945634 B = 5673.120979 C = 7650.345291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.137 4.137 7 C -0.082 4.082 8 C 0.128 3.872 9 H 0.102 0.898 10 O -0.374 6.374 11 C 0.021 3.979 12 C 0.529 3.471 13 O -0.568 6.568 14 N -0.603 5.603 15 C 0.113 3.887 16 C -0.126 4.126 17 C 0.234 3.766 18 O -0.592 6.592 19 C -0.553 4.553 20 H 0.063 0.937 21 C 0.036 3.964 22 N -0.911 5.911 23 Si 0.958 3.042 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.128 3.872 28 C -0.149 4.149 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.380 0.620 43 H 0.270 0.730 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.344 5.597 -12.034 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.074 3.926 4 C -0.214 4.214 5 C -0.096 4.096 6 C -0.156 4.156 7 C -0.083 4.083 8 C 0.067 3.933 9 H 0.120 0.880 10 O -0.292 6.292 11 C -0.075 4.075 12 C 0.317 3.683 13 O -0.448 6.448 14 N -0.336 5.336 15 C -0.009 4.009 16 C -0.165 4.165 17 C 0.194 3.806 18 O -0.401 6.401 19 C -0.591 4.591 20 H 0.081 0.919 21 C -0.165 4.165 22 N -0.551 5.551 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.193 1.193 27 C 0.006 3.994 28 C -0.168 4.168 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.230 0.770 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.045 6.466 -12.341 17.779 hybrid contribution -0.107 -1.278 1.074 1.673 sum -11.151 5.187 -11.267 16.679 Atomic orbital electron populations 1.23365 0.76317 1.05532 1.02440 1.86095 1.23621 1.26699 1.88559 1.19023 0.91904 0.85197 0.96513 1.21588 1.01414 0.91522 1.06884 1.21227 0.93578 0.98348 0.96451 1.20988 0.94592 0.97769 1.02224 1.19623 0.93465 0.93645 1.01524 1.20519 0.91614 0.93290 0.87920 0.88044 1.87985 1.87714 1.33122 1.20363 1.23145 1.00785 1.01916 0.81612 1.20242 0.78507 0.83388 0.86139 1.90632 1.47521 1.23275 1.83387 1.48533 1.56138 1.17375 1.11560 1.21988 0.98150 0.99044 0.81715 1.23028 1.01601 0.93152 0.98745 1.19792 0.82208 0.90123 0.88471 1.86077 1.34568 1.74412 1.45030 1.21651 1.04608 1.13935 1.18929 0.91921 1.25616 0.96440 0.99295 0.95195 1.69728 1.21378 1.38980 1.24986 0.85552 0.79439 0.79399 0.77214 1.20337 1.20886 1.19336 1.22499 0.96254 0.80491 1.00186 1.20382 0.92668 0.97538 1.06188 0.90893 0.86757 0.91824 0.82452 0.82653 0.86091 0.87095 0.92968 0.92685 0.92753 0.91754 0.91758 0.90992 0.76979 0.92029 0.90768 0.90270 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -8.64 10.50 -92.39 -0.97 -9.61 16 3 C 0.12 3.15 6.69 22.51 0.15 3.30 16 4 C -0.20 -4.18 9.04 22.37 0.20 -3.97 16 5 C -0.08 -1.71 10.04 22.25 0.22 -1.49 16 6 C -0.14 -3.81 9.33 22.28 0.21 -3.60 16 7 C -0.08 -2.46 4.57 -19.88 -0.09 -2.55 16 8 C 0.13 4.23 2.08 29.10 0.06 4.29 16 9 H 0.10 3.12 6.94 -2.39 -0.02 3.10 16 10 O -0.37 -11.85 9.33 -130.15 -1.21 -13.07 16 11 C 0.02 0.46 10.81 113.37 1.23 1.68 16 12 C 0.53 21.48 7.14 87.66 0.63 22.11 16 13 O -0.57 -26.42 16.87 15.78 0.27 -26.15 16 14 N -0.60 -24.76 3.33 -811.71 -2.70 -27.46 16 15 C 0.11 4.70 6.87 86.75 0.60 5.30 16 16 C -0.13 -5.64 5.52 31.80 0.18 -5.46 16 17 C 0.23 11.02 0.88 -10.15 -0.01 11.01 16 18 O -0.59 -29.54 13.17 -148.98 -1.96 -31.51 16 19 C -0.55 -27.73 8.25 25.60 0.21 -27.52 16 20 H 0.06 3.11 7.78 -2.91 -0.02 3.09 16 21 C 0.04 1.77 5.29 84.65 0.45 2.22 16 22 N -0.91 -46.26 10.76 21.45 0.23 -46.03 16 23 Si 0.96 40.03 29.54 68.60 2.03 42.05 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 C 0.13 5.24 4.32 86.85 0.38 5.62 16 28 C -0.15 -4.38 7.58 22.37 0.17 -4.21 16 29 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 32 H 0.16 2.31 6.30 -2.91 -0.02 2.29 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.12 3.52 7.86 -2.91 -0.02 3.49 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.05 8.08 -2.39 -0.02 1.04 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.06 2.87 8.03 -2.39 -0.02 2.85 16 41 H 0.07 3.38 7.69 -2.39 -0.02 3.36 16 42 H 0.38 19.41 7.24 -74.06 -0.54 18.87 16 43 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 44 H 0.07 2.91 5.71 -2.39 -0.01 2.90 16 45 H 0.08 3.22 7.32 -2.38 -0.02 3.20 16 46 H 0.13 3.89 6.54 -2.91 -0.02 3.87 16 Total: -1.00 -64.01 374.92 1.83 -62.18 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: 0.47 Total: 41.48 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.68 Total: 8.11 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -2.47 Total: -73.49 kcal Atomic # 8 Polarization: -76.46 SS G_CDS: -3.88 Total: -80.34 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.05 kcal Total: -64.01 1.83 -62.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597801350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.181 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds