Wall clock time and date at job start Tue Mar 31 2020 19:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36004 * 117.00054 * 2 1 4 4 C 1.38235 * 119.96831 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.93906 * 180.02562 * 4 3 2 6 6 C 1.47620 * 120.05569 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99894 * 325.28389 * 6 5 4 8 8 N 1.34779 * 119.99771 * 145.27751 * 6 5 4 9 9 C 1.46928 * 120.63267 * 354.26355 * 8 6 5 10 10 C 1.53194 * 108.77195 * 233.32870 * 9 8 6 11 11 C 1.53038 * 109.31352 * 305.36453 * 10 9 8 12 12 C 1.53040 * 109.53737 * 61.36900 * 11 10 9 13 13 H 1.08999 * 109.50163 * 58.58319 * 12 11 10 14 14 C 1.50704 * 109.49785 * 178.68389 * 12 11 10 15 15 H 1.08004 * 119.99910 * 35.02765 * 14 12 11 16 16 C 1.37872 * 119.99805 * 215.03747 * 14 12 11 17 17 N 1.31517 * 119.99665 * 184.82699 * 16 14 12 18 18 Si 1.86803 * 120.00285 * 4.82093 * 16 14 12 19 19 H 1.48501 * 109.46662 * 84.80992 * 18 16 14 20 20 H 1.48499 * 109.47197 * 204.80936 * 18 16 14 21 21 H 1.48494 * 109.46933 * 324.80894 * 18 16 14 22 22 C 1.46929 * 120.62614 * 173.97732 * 8 6 5 23 23 C 1.39703 * 119.89039 * 0.25276 * 5 4 3 24 24 C 1.38227 * 119.94017 * 359.49373 * 23 5 4 25 25 O 1.36010 * 119.97248 * 180.26835 * 24 23 5 26 26 C 1.42900 * 116.99833 * 0.26372 * 25 24 23 27 27 C 1.39221 * 119.97189 * 180.02562 * 3 2 1 28 28 O 1.35899 * 119.94524 * 359.97438 * 27 3 2 29 29 H 1.08995 * 109.46777 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47036 * 300.00220 * 1 2 3 32 32 H 1.08001 * 120.03299 * 0.03010 * 4 3 2 33 33 H 1.08995 * 109.58571 * 353.11525 * 9 8 6 34 34 H 1.08996 * 109.58279 * 113.54268 * 9 8 6 35 35 H 1.09001 * 109.49620 * 65.31970 * 10 9 8 36 36 H 1.08997 * 109.49345 * 185.38088 * 10 9 8 37 37 H 1.09003 * 109.45952 * 181.38506 * 11 10 9 38 38 H 1.08996 * 109.45908 * 301.34444 * 11 10 9 39 39 H 0.97006 * 119.99621 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.58838 * 246.45593 * 22 8 6 41 41 H 1.08998 * 109.58431 * 6.88389 * 22 8 6 42 42 H 1.08004 * 120.02944 * 179.72384 * 23 5 4 43 43 H 1.09004 * 109.46346 * 299.99346 * 26 25 24 44 44 H 1.08996 * 109.47474 * 59.99122 * 26 25 24 45 45 H 1.08992 * 109.46894 * 179.97438 * 26 25 24 46 46 H 0.96700 * 113.99654 * 90.00221 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2930 2.3707 -0.0005 5 6 1.9279 3.6151 -0.0011 6 6 1.1257 4.8544 -0.0022 7 8 0.0691 4.8940 -0.6023 8 7 1.5647 5.9418 0.6621 9 6 2.7738 5.8734 1.4941 10 6 2.4365 6.3874 2.8972 11 6 1.8254 7.7865 2.7904 12 6 0.5310 7.7188 1.9767 13 1 -0.1657 7.0322 2.4577 14 6 -0.0869 9.0911 1.8994 15 1 0.5448 9.9652 1.8408 16 6 -1.4585 9.2308 1.9037 17 7 -1.9990 10.4187 1.7408 18 14 -2.5492 7.7329 2.1408 19 1 -2.7106 7.4629 3.5921 20 1 -3.8802 7.9886 1.5338 21 1 -1.9239 6.5565 1.4849 22 6 0.8466 7.2198 0.5631 23 6 3.3232 3.6848 -0.0064 24 6 4.0720 2.5230 -0.0006 25 8 5.4304 2.5901 -0.0002 26 6 6.0155 3.8939 -0.0003 27 6 3.4369 1.2840 -0.0005 28 8 4.1754 0.1432 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2145 2.3142 -0.0005 33 1 3.1168 4.8406 1.5559 34 1 3.5548 6.4943 1.0553 35 1 1.7219 5.7134 3.3696 36 1 3.3458 6.4319 3.4966 37 1 1.6071 8.1646 3.7891 38 1 2.5308 8.4540 2.2957 39 1 -2.9641 10.5169 1.7435 40 1 1.4705 7.9506 0.0485 41 1 -0.0819 7.0754 0.0108 42 1 3.8163 4.6457 -0.0114 43 1 5.6957 4.4355 -0.8905 44 1 5.6952 4.4360 0.8894 45 1 7.1018 3.8046 0.0005 46 1 4.3888 -0.1872 -0.8840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:03 Heat of formation + Delta-G solvation = -114.217727 kcal Electronic energy + Delta-G solvation = -30098.082782 eV Core-core repulsion = 25954.383445 eV Total energy + Delta-G solvation = -4143.699338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21252 -39.70797 -39.28630 -37.40136 -37.10580 -36.09078 -33.48508 -31.98850 -30.91787 -30.10283 -29.83525 -28.11554 -27.18042 -25.30604 -25.23444 -23.07751 -22.31861 -21.82051 -20.40529 -19.28163 -18.61478 -18.06406 -17.38930 -16.89654 -16.86113 -16.45294 -16.15909 -15.78240 -15.64499 -15.31158 -14.90936 -14.74226 -14.21932 -13.97291 -13.90871 -13.80196 -13.33946 -12.95936 -12.82482 -12.60558 -12.55307 -12.34803 -12.28411 -11.98130 -11.80637 -11.68492 -11.33885 -11.18448 -10.90633 -10.78311 -10.72535 -10.57936 -10.12297 -9.78436 -9.74720 -9.38947 -9.15912 -8.62455 -8.51983 -8.42007 -8.13810 -6.15342 -4.16735 0.60409 1.06163 2.50820 2.77424 3.21007 3.29436 3.35775 3.38299 3.46747 3.52456 3.92060 4.39532 4.41022 4.64715 4.70491 4.83694 4.86786 4.88958 4.96192 4.98056 5.10927 5.16288 5.21394 5.25870 5.28484 5.37094 5.45555 5.55474 5.74590 5.81904 5.95913 5.99378 6.01657 6.09210 6.22739 6.37144 6.54082 6.61801 6.72961 6.81493 6.85698 6.93751 7.20877 7.30219 7.53600 7.67487 7.75256 8.37827 8.45761 8.89480 9.48043 10.97013 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003734 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.773193 B = 7495.961367 C = 8871.301073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.303 6.303 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.048 4.048 6 C 0.548 3.452 7 O -0.535 6.535 8 N -0.598 5.598 9 C 0.092 3.908 10 C -0.138 4.138 11 C -0.105 4.105 12 C 0.006 3.994 13 H 0.035 0.965 14 C -0.516 4.516 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.895 5.895 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.258 1.258 22 C 0.113 3.887 23 C -0.205 4.205 24 C 0.135 3.865 25 O -0.302 6.302 26 C 0.021 3.979 27 C 0.056 3.944 28 O -0.472 6.472 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.265 0.735 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.059 -18.554 -3.538 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.216 6.216 3 C 0.089 3.911 4 C -0.197 4.197 5 C -0.052 4.052 6 C 0.335 3.665 7 O -0.413 6.413 8 N -0.329 5.329 9 C -0.031 4.031 10 C -0.176 4.176 11 C -0.143 4.143 12 C -0.014 4.014 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.094 0.906 16 C -0.126 4.126 17 N -0.531 5.531 18 Si 0.697 3.303 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.182 1.182 22 C -0.007 4.007 23 C -0.224 4.224 24 C 0.088 3.912 25 O -0.215 6.215 26 C -0.074 4.074 27 C 0.010 3.990 28 O -0.280 6.280 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.166 0.834 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 13.503 -18.681 -3.254 23.279 hybrid contribution -0.925 -0.235 -0.352 1.017 sum 12.578 -18.917 -3.607 23.001 Atomic orbital electron populations 1.23188 0.77710 1.04244 1.02133 1.86125 1.21736 1.25429 1.88294 1.18815 0.90641 0.84966 0.96722 1.21134 1.01012 0.90106 1.07494 1.19658 0.92818 0.93781 0.98931 1.18187 0.85242 0.83006 0.80048 1.90790 1.22329 1.83484 1.44724 1.48416 1.27619 1.11264 1.45646 1.22241 0.87145 1.01883 0.91821 1.22024 1.00853 0.99456 0.95304 1.21586 0.98068 0.93567 1.01045 1.19467 0.93881 0.97358 0.90681 0.94688 1.20878 0.91882 0.91033 1.51556 0.90622 1.25066 0.98071 0.95597 0.93883 1.69900 1.11590 1.22660 1.48997 0.86940 0.80135 0.84418 0.78791 1.20236 1.21443 1.18244 1.22522 0.96416 0.80278 1.01530 1.21461 0.93468 0.98103 1.09368 1.18790 0.83179 0.92358 0.96865 1.86141 1.16003 1.31024 1.88343 1.23195 0.99267 0.82997 1.01914 1.16808 0.86078 0.84625 1.11533 1.84899 1.71763 1.38383 1.32967 0.92088 0.87830 0.92174 0.83767 0.89413 0.91523 0.92043 0.91593 0.92086 0.92700 0.92478 0.91757 0.89787 0.83401 0.92287 0.92104 0.87763 0.76228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.56 10.27 -34.50 -0.35 -3.91 16 3 C 0.14 1.73 6.69 -39.22 -0.26 1.47 16 4 C -0.18 -2.46 8.59 -39.04 -0.34 -2.80 16 5 C -0.05 -0.72 5.30 -104.98 -0.56 -1.27 16 6 C 0.55 10.09 7.38 -12.43 -0.09 10.00 16 7 O -0.54 -11.85 16.23 5.30 0.09 -11.77 16 8 N -0.60 -10.64 2.97 -173.96 -0.52 -11.16 16 9 C 0.09 1.26 4.75 -3.71 -0.02 1.24 16 10 C -0.14 -2.02 6.08 -26.61 -0.16 -2.18 16 11 C -0.10 -1.92 5.15 -26.69 -0.14 -2.06 16 12 C 0.01 0.13 1.91 -91.65 -0.18 -0.04 16 13 H 0.03 0.84 5.30 -51.93 -0.28 0.56 16 14 C -0.52 -13.88 8.86 -34.44 -0.31 -14.18 16 15 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 16 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 17 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 18 Si 0.87 21.91 26.99 -169.99 -4.59 17.32 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.56 6.82 56.52 0.39 -6.18 16 22 C 0.11 2.39 5.71 -3.71 -0.02 2.37 16 23 C -0.20 -2.50 6.33 -39.04 -0.25 -2.75 16 24 C 0.13 1.60 6.69 -39.22 -0.26 1.34 16 25 O -0.30 -3.22 10.27 -34.51 -0.35 -3.57 16 26 C 0.02 0.15 9.81 101.05 0.99 1.14 16 27 C 0.06 0.71 6.73 -38.85 -0.26 0.44 16 28 O -0.47 -5.42 13.04 -44.81 -0.58 -6.01 16 29 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.14 1.97 6.21 -52.49 -0.33 1.64 16 33 H 0.09 1.06 4.45 -51.93 -0.23 0.83 16 34 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 2.02 7.00 -51.93 -0.36 1.65 16 42 H 0.15 1.56 4.21 -52.48 -0.22 1.34 16 43 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 44 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.38 2.69 9.06 45.56 0.41 3.10 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -34.73 368.29 -6.48 -41.22 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.54 Total: 2.47 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.95 Total: -4.01 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.26 Total: -37.28 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.21 Total: -25.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.73 -6.48 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.001 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds