Wall clock time and date at job start Tue Mar 31 2020 19:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36004 * 117.00054 * 2 1 4 4 C 1.38235 * 119.96831 * 359.97438 * 3 2 1 5 5 C 1.39699 * 119.93906 * 180.02562 * 4 3 2 6 6 C 1.47620 * 120.05569 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99894 * 325.28389 * 6 5 4 8 8 N 1.34779 * 119.99771 * 145.27751 * 6 5 4 9 9 C 1.46928 * 120.63267 * 354.26355 * 8 6 5 10 10 C 1.53194 * 108.77195 * 233.32870 * 9 8 6 11 11 C 1.53038 * 109.31352 * 305.36453 * 10 9 8 12 12 C 1.53040 * 109.53737 * 61.36900 * 11 10 9 13 13 H 1.08999 * 109.50163 * 58.58319 * 12 11 10 14 14 C 1.50704 * 109.49785 * 178.68389 * 12 11 10 15 15 H 1.08004 * 119.99910 * 35.02765 * 14 12 11 16 16 C 1.37872 * 119.99805 * 215.03747 * 14 12 11 17 17 N 1.31517 * 119.99665 * 184.82699 * 16 14 12 18 18 Si 1.86803 * 120.00285 * 4.82093 * 16 14 12 19 19 H 1.48501 * 109.46662 * 84.80992 * 18 16 14 20 20 H 1.48499 * 109.47197 * 204.80936 * 18 16 14 21 21 H 1.48494 * 109.46933 * 324.80894 * 18 16 14 22 22 C 1.46929 * 120.62614 * 173.97732 * 8 6 5 23 23 C 1.39703 * 119.89039 * 0.25276 * 5 4 3 24 24 C 1.38227 * 119.94017 * 359.49373 * 23 5 4 25 25 O 1.36010 * 119.97248 * 180.26835 * 24 23 5 26 26 C 1.42900 * 116.99833 * 0.26372 * 25 24 23 27 27 C 1.39221 * 119.97189 * 180.02562 * 3 2 1 28 28 O 1.35899 * 119.94524 * 359.97438 * 27 3 2 29 29 H 1.08995 * 109.46777 * 60.00002 * 1 2 3 30 30 H 1.08995 * 109.46842 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47036 * 300.00220 * 1 2 3 32 32 H 1.08001 * 120.03299 * 0.03010 * 4 3 2 33 33 H 1.08995 * 109.58571 * 353.11525 * 9 8 6 34 34 H 1.08996 * 109.58279 * 113.54268 * 9 8 6 35 35 H 1.09001 * 109.49620 * 65.31970 * 10 9 8 36 36 H 1.08997 * 109.49345 * 185.38088 * 10 9 8 37 37 H 1.09003 * 109.45952 * 181.38506 * 11 10 9 38 38 H 1.08996 * 109.45908 * 301.34444 * 11 10 9 39 39 H 0.97006 * 119.99621 * 179.97438 * 17 16 14 40 40 H 1.08996 * 109.58838 * 246.45593 * 22 8 6 41 41 H 1.08998 * 109.58431 * 6.88389 * 22 8 6 42 42 H 1.08004 * 120.02944 * 179.72384 * 23 5 4 43 43 H 1.09004 * 109.46346 * 299.99346 * 26 25 24 44 44 H 1.08996 * 109.47474 * 59.99122 * 26 25 24 45 45 H 1.08992 * 109.46894 * 179.97438 * 26 25 24 46 46 H 0.96700 * 113.99654 * 90.00221 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2930 2.3707 -0.0005 5 6 1.9279 3.6151 -0.0011 6 6 1.1257 4.8544 -0.0022 7 8 0.0691 4.8940 -0.6023 8 7 1.5647 5.9418 0.6621 9 6 2.7738 5.8734 1.4941 10 6 2.4365 6.3874 2.8972 11 6 1.8254 7.7865 2.7904 12 6 0.5310 7.7188 1.9767 13 1 -0.1657 7.0322 2.4577 14 6 -0.0869 9.0911 1.8994 15 1 0.5448 9.9652 1.8408 16 6 -1.4585 9.2308 1.9037 17 7 -1.9990 10.4187 1.7408 18 14 -2.5492 7.7329 2.1408 19 1 -2.7106 7.4629 3.5921 20 1 -3.8802 7.9886 1.5338 21 1 -1.9239 6.5565 1.4849 22 6 0.8466 7.2198 0.5631 23 6 3.3232 3.6848 -0.0064 24 6 4.0720 2.5230 -0.0006 25 8 5.4304 2.5901 -0.0002 26 6 6.0155 3.8939 -0.0003 27 6 3.4369 1.2840 -0.0005 28 8 4.1754 0.1432 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2145 2.3142 -0.0005 33 1 3.1168 4.8406 1.5559 34 1 3.5548 6.4943 1.0553 35 1 1.7219 5.7134 3.3696 36 1 3.3458 6.4319 3.4966 37 1 1.6071 8.1646 3.7891 38 1 2.5308 8.4540 2.2957 39 1 -2.9641 10.5169 1.7435 40 1 1.4705 7.9506 0.0485 41 1 -0.0819 7.0754 0.0108 42 1 3.8163 4.6457 -0.0114 43 1 5.6957 4.4355 -0.8905 44 1 5.6952 4.4360 0.8894 45 1 7.1018 3.8046 0.0005 46 1 4.3888 -0.1872 -0.8840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597907938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:02 Heat of formation + Delta-G solvation = -139.326824 kcal Electronic energy + Delta-G solvation = -30099.171595 eV Core-core repulsion = 25954.383445 eV Total energy + Delta-G solvation = -4144.788150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.22335 -40.98247 -40.09432 -38.58012 -38.22875 -37.14040 -35.29856 -33.68751 -32.36314 -31.15628 -30.85735 -28.82801 -27.99399 -27.05930 -26.53057 -24.22610 -23.56130 -22.94516 -21.72707 -20.64256 -19.66843 -19.30207 -18.82694 -18.34313 -17.73688 -17.33519 -17.24040 -16.91462 -16.59000 -16.50121 -16.28736 -15.89807 -15.59176 -15.36587 -15.13481 -14.84319 -14.72435 -14.46062 -14.15146 -13.99989 -13.80617 -13.46526 -13.39997 -13.04835 -12.81731 -12.72912 -12.59697 -12.47736 -12.44906 -12.03611 -11.87999 -11.76650 -11.69088 -11.60816 -11.37765 -11.10734 -10.86187 -10.74072 -9.69839 -9.38631 -9.35016 -8.36640 -6.38652 -0.43075 0.12649 1.23481 1.30429 1.40954 1.52441 1.71727 1.93536 2.27218 2.40690 2.60260 3.01240 3.02695 3.28716 3.74175 3.79490 3.87961 4.00470 4.10749 4.13829 4.24199 4.29614 4.36320 4.41126 4.44610 4.45249 4.53570 4.63408 4.67144 4.68243 4.71371 4.81217 4.89270 4.92888 4.96823 5.01969 5.06847 5.10280 5.23086 5.36157 5.55853 5.63342 5.70164 6.05623 6.15332 6.25932 6.37638 6.70327 6.80408 7.00047 7.28376 8.79567 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014627 B = 0.003734 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.773193 B = 7495.961367 C = 8871.301073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.311 6.311 3 C 0.133 3.867 4 C -0.185 4.185 5 C -0.064 4.064 6 C 0.545 3.455 7 O -0.585 6.585 8 N -0.598 5.598 9 C 0.086 3.914 10 C -0.131 4.131 11 C -0.101 4.101 12 C 0.003 3.997 13 H 0.019 0.981 14 C -0.509 4.509 15 H 0.048 0.952 16 C 0.025 3.975 17 N -0.940 5.940 18 Si 0.927 3.073 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.124 3.876 23 C -0.192 4.192 24 C 0.141 3.859 25 O -0.309 6.309 26 C 0.007 3.993 27 C 0.057 3.943 28 O -0.481 6.481 29 H 0.061 0.939 30 H 0.131 0.869 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.266 0.734 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.168 0.832 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.127 0.873 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.064 -20.789 -2.939 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.224 6.224 3 C 0.086 3.914 4 C -0.205 4.205 5 C -0.068 4.068 6 C 0.334 3.666 7 O -0.467 6.467 8 N -0.329 5.329 9 C -0.034 4.034 10 C -0.169 4.169 11 C -0.139 4.139 12 C -0.017 4.017 13 H 0.038 0.962 14 C -0.547 4.547 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.580 5.580 18 Si 0.754 3.246 19 H -0.188 1.188 20 H -0.215 1.215 21 H -0.192 1.192 22 C 0.002 3.998 23 C -0.212 4.212 24 C 0.094 3.906 25 O -0.222 6.222 26 C -0.087 4.087 27 C 0.010 3.990 28 O -0.292 6.292 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.186 0.814 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.145 0.855 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 16.559 -20.938 -2.638 26.825 hybrid contribution -1.716 0.423 -0.571 1.858 sum 14.843 -20.515 -3.209 25.524 Atomic orbital electron populations 1.23422 0.76273 1.06063 1.02094 1.86117 1.23224 1.24928 1.88142 1.18833 0.90950 0.84898 0.96700 1.21101 1.00912 0.90420 1.08090 1.19335 0.93579 0.92050 1.01803 1.18736 0.84854 0.83947 0.79025 1.90757 1.24735 1.84383 1.46821 1.48386 1.28509 1.09832 1.46138 1.22629 0.85981 1.04092 0.90737 1.21993 1.02193 0.96227 0.96478 1.21479 0.96059 0.96633 0.99733 1.19450 0.95729 0.94230 0.92242 0.96234 1.21201 0.91558 0.92488 1.49500 0.93396 1.25739 0.99615 0.97597 0.94390 1.70013 1.11890 1.24503 1.51576 0.86033 0.78349 0.81111 0.79156 1.18809 1.21526 1.19223 1.21980 0.95629 0.82336 0.99874 1.21513 0.92110 0.99216 1.08316 1.18742 0.83964 0.91823 0.96055 1.86159 1.14874 1.33294 1.87917 1.23565 1.00528 0.81677 1.02891 1.16978 0.86079 0.85324 1.10634 1.84835 1.71468 1.38076 1.34836 0.92053 0.85093 0.92342 0.84509 0.87076 0.88294 0.93050 0.87280 0.92760 0.91785 0.92467 0.91051 0.93516 0.81439 0.91510 0.90837 0.85487 0.73911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.31 -6.86 10.27 -79.50 -0.82 -7.68 16 3 C 0.13 3.21 6.69 22.51 0.15 3.36 16 4 C -0.19 -5.02 8.59 22.62 0.19 -4.82 16 5 C -0.06 -1.82 5.30 -20.09 -0.11 -1.93 16 6 C 0.55 19.93 7.38 86.72 0.64 20.57 16 7 O -0.59 -26.77 16.23 -3.96 -0.06 -26.84 16 8 N -0.60 -20.55 2.97 -822.56 -2.44 -22.99 16 9 C 0.09 2.04 4.75 86.36 0.41 2.45 16 10 C -0.13 -3.34 6.08 30.67 0.19 -3.15 16 11 C -0.10 -3.52 5.15 30.62 0.16 -3.36 16 12 C 0.00 0.14 1.91 -11.46 -0.02 0.12 16 13 H 0.02 0.94 5.30 -2.39 -0.01 0.92 16 14 C -0.51 -28.11 8.86 25.60 0.23 -27.88 16 15 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 16 C 0.03 1.46 5.47 84.65 0.46 1.92 16 17 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 18 Si 0.93 46.83 26.99 68.60 1.85 48.68 16 19 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 21 H -0.27 -13.80 6.82 99.48 0.68 -13.12 16 22 C 0.12 5.27 5.71 86.36 0.49 5.77 16 23 C -0.19 -4.11 6.33 22.62 0.14 -3.97 16 24 C 0.14 2.92 6.69 22.51 0.15 3.07 16 25 O -0.31 -5.40 10.27 -79.58 -0.82 -6.22 16 26 C 0.01 0.07 9.81 113.37 1.11 1.18 16 27 C 0.06 1.29 6.73 22.75 0.15 1.44 16 28 O -0.48 -9.77 13.04 -68.13 -0.89 -10.66 16 29 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 30 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 32 H 0.14 3.81 6.21 -2.91 -0.02 3.79 16 33 H 0.11 2.19 4.45 -2.39 -0.01 2.18 16 34 H 0.10 1.78 8.04 -2.39 -0.02 1.76 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 40 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.05 2.33 7.00 -2.39 -0.02 2.31 16 42 H 0.17 2.81 4.21 -2.91 -0.01 2.80 16 43 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 44 H 0.07 0.54 7.67 -2.39 -0.02 0.52 16 45 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.40 4.56 9.06 -74.06 -0.67 3.89 16 Total: -1.00 -78.92 368.29 2.91 -76.01 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.33 Total: 11.68 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.47 Total: -3.87 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.15 Total: -81.10 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -2.59 Total: -51.39 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.85 Total: 48.68 kcal Total: -78.92 2.91 -76.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.321 kcal (2) G-P(sol) polarization free energy of solvation -78.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds