Wall clock time and date at job start Tue Mar 31 2020 19:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99813 * 2 1 4 4 O 1.20823 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99782 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46917 * 180.02562 * 5 3 2 7 7 C 1.42902 * 113.99900 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47203 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47066 * 64.99326 * 8 7 6 10 10 C 1.34777 * 119.99960 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99737 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47010 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47465 * 305.00010 * 13 12 10 15 15 C 1.50698 * 109.47080 * 65.00685 * 13 12 10 16 16 H 1.08002 * 120.00223 * 26.94016 * 15 13 12 17 17 C 1.37886 * 120.00006 * 206.93845 * 15 13 12 18 18 N 1.31507 * 120.00030 * 186.61954 * 17 15 13 19 19 Si 1.86801 * 119.99698 * 6.90022 * 17 15 13 20 20 H 1.48503 * 109.46742 * 274.25466 * 19 17 15 21 21 H 1.48500 * 109.47460 * 34.25082 * 19 17 15 22 22 H 1.48499 * 109.46928 * 154.25467 * 19 17 15 23 23 C 1.50706 * 109.46940 * 184.99987 * 13 12 10 24 24 C 1.38233 * 119.99857 * 297.92917 * 23 13 12 25 25 C 1.38240 * 119.99757 * 179.78388 * 24 23 13 26 26 C 1.38239 * 119.99979 * 0.44453 * 25 24 23 27 27 C 1.38242 * 120.00017 * 359.80708 * 26 25 24 28 28 C 1.38230 * 119.99928 * 118.19592 * 23 13 12 29 29 H 1.09000 * 109.47268 * 300.00218 * 1 2 3 30 30 H 1.09001 * 109.47416 * 59.99991 * 1 2 3 31 31 H 1.09005 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47545 * 59.99861 * 5 3 2 33 33 H 1.09008 * 109.46789 * 299.99360 * 5 3 2 34 34 H 1.08998 * 109.47286 * 59.99280 * 7 6 5 35 35 H 1.09002 * 109.47039 * 299.99623 * 7 6 5 36 36 H 1.09000 * 109.46918 * 304.99775 * 8 7 6 37 37 H 1.09000 * 109.47323 * 184.99694 * 8 7 6 38 38 H 0.96995 * 120.00055 * 0.02562 * 9 8 7 39 39 H 1.09000 * 109.46914 * 60.00574 * 12 10 9 40 40 H 1.09000 * 109.47087 * 300.00639 * 12 10 9 41 41 H 0.96994 * 119.99996 * 180.27656 * 18 17 15 42 42 H 1.07994 * 120.00554 * 359.97438 * 24 23 13 43 43 H 1.07996 * 120.00426 * 180.26872 * 25 24 23 44 44 H 1.08000 * 120.00114 * 179.82966 * 26 25 24 45 45 H 1.07993 * 120.00100 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00162 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6454 0.0001 7 6 5.3881 2.8326 -0.0009 8 6 5.7047 4.3294 -0.0007 9 7 5.2355 4.9276 1.2517 10 6 5.4085 6.2454 1.4754 11 8 5.9521 6.9360 0.6397 12 6 4.9264 6.8606 2.7638 13 6 5.2429 8.3575 2.7640 14 1 6.3079 8.5037 2.5844 15 6 4.4519 9.0383 1.6768 16 1 3.5136 8.6172 1.3472 17 6 4.9262 10.1988 1.1028 18 7 4.1786 10.8633 0.2491 19 14 6.6339 10.8228 1.5318 20 1 6.5640 11.6481 2.7644 21 1 7.5399 9.6685 1.7598 22 1 7.1551 11.6477 0.4125 23 6 4.8728 8.9491 4.0998 24 6 3.5586 8.9220 4.5274 25 6 3.2199 9.4607 5.7547 26 6 4.1940 10.0345 6.5502 27 6 5.5075 10.0662 6.1202 28 6 5.8467 9.5236 4.8949 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.9557 0.7810 -0.8907 33 1 3.9563 0.7807 0.8893 34 1 5.8149 2.3714 -0.8915 35 1 5.8164 2.3702 0.8884 36 1 5.2026 4.8071 -0.8420 37 1 6.7814 4.4731 -0.0910 38 1 4.8010 4.3751 1.9201 39 1 5.4286 6.3827 3.6049 40 1 3.8496 6.7172 2.8544 41 1 4.5138 11.6775 -0.1578 42 1 2.7969 8.4774 3.9042 43 1 2.1939 9.4357 6.0908 44 1 3.9290 10.4578 7.5078 45 1 6.2685 10.5141 6.7418 46 1 6.8729 9.5482 4.5590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600394574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:37 Heat of formation + Delta-G solvation = -137.605898 kcal Electronic energy + Delta-G solvation = -28229.860360 eV Core-core repulsion = 24085.146835 eV Total energy + Delta-G solvation = -4144.713525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73421 -39.25459 -38.52710 -38.02954 -36.62822 -34.54590 -33.81584 -31.62565 -30.55253 -30.16075 -29.31010 -28.40415 -26.90864 -25.72908 -22.98682 -22.23155 -21.76712 -21.54508 -20.22790 -19.13519 -18.06081 -17.35231 -17.22341 -16.88997 -16.62781 -16.45642 -16.08246 -15.82519 -15.13511 -14.64540 -14.52513 -14.25836 -14.06702 -13.85682 -13.56364 -13.22225 -12.90542 -12.81298 -12.64934 -12.57480 -12.40675 -12.31699 -12.20146 -11.81263 -11.70071 -11.48463 -11.14315 -11.02268 -10.75359 -10.67201 -10.45767 -10.30268 -10.15353 -9.83169 -9.54866 -9.09384 -8.87090 -8.55391 -8.37787 -8.16719 -7.77109 -5.92035 -3.87513 1.88413 1.98353 2.13642 2.19339 3.45348 3.49271 3.50527 3.54426 3.58845 3.72854 4.37883 4.57033 4.62080 4.63058 4.66547 4.77219 4.83594 4.86450 4.93685 5.08843 5.18600 5.35219 5.55348 5.59710 5.60409 5.71335 5.73598 5.99377 5.99593 6.01082 6.07779 6.14367 6.28937 6.38177 6.61532 6.65884 6.74422 6.87485 6.92962 7.10357 7.18420 7.31278 7.45335 7.64880 7.76892 7.88145 8.09886 8.60399 9.06246 9.09499 9.72122 11.21287 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.002664 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.115506 B =10507.655248 C =11499.804398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.456 3.544 4 O -0.477 6.477 5 C 0.072 3.928 6 O -0.362 6.362 7 C 0.053 3.947 8 C 0.125 3.875 9 N -0.744 5.744 10 C 0.514 3.486 11 O -0.503 6.503 12 C -0.115 4.115 13 C 0.048 3.952 14 H 0.053 0.947 15 C -0.481 4.481 16 H 0.072 0.928 17 C 0.083 3.917 18 N -0.899 5.899 19 Si 0.868 3.132 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.292 1.292 23 C -0.039 4.039 24 C -0.101 4.101 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.125 4.125 28 C -0.139 4.139 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -23.072 4.732 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.280 6.280 3 C 0.296 3.704 4 O -0.361 6.361 5 C -0.005 4.005 6 O -0.281 6.281 7 C -0.024 4.024 8 C 0.001 3.999 9 N -0.400 5.400 10 C 0.301 3.699 11 O -0.375 6.375 12 C -0.155 4.155 13 C 0.029 3.971 14 H 0.071 0.929 15 C -0.518 4.518 16 H 0.090 0.910 17 C -0.119 4.119 18 N -0.537 5.537 19 Si 0.696 3.304 20 H -0.201 1.201 21 H -0.186 1.186 22 H -0.219 1.219 23 C -0.040 4.040 24 C -0.119 4.119 25 C -0.145 4.145 26 C -0.168 4.168 27 C -0.143 4.143 28 C -0.157 4.157 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.316 -21.894 3.955 22.250 hybrid contribution 0.529 0.107 0.358 0.648 sum 0.213 -21.786 4.313 22.210 Atomic orbital electron populations 1.23303 0.75579 1.03787 1.02974 1.86437 1.23930 1.32944 1.84659 1.23284 0.91524 0.81776 0.73781 1.90769 1.66607 1.36109 1.42615 1.21627 0.88394 0.86379 1.04143 1.88083 1.22900 1.21522 1.95560 1.22937 0.80459 0.97535 1.01432 1.21217 0.99859 0.89743 0.89130 1.46040 1.64051 1.09941 1.19949 1.20808 0.78912 0.80578 0.89629 1.90737 1.40605 1.60078 1.46071 1.21610 1.02002 0.98495 0.93418 1.18240 0.98951 0.89600 0.90301 0.92866 1.20622 1.07026 1.07904 1.16271 0.91010 1.24876 0.96640 0.96046 0.94367 1.69894 1.36677 1.16960 1.30200 0.86949 0.86637 0.78887 0.77906 1.20087 1.18586 1.21887 1.20787 0.92934 0.95267 0.94968 1.20970 0.96383 0.99606 0.94901 1.21060 0.98470 0.99577 0.95353 1.20855 0.93495 1.02659 0.99811 1.20948 0.96134 1.00594 0.96614 1.21053 0.99060 1.00933 0.94684 0.91623 0.91662 0.87876 0.88860 0.88838 0.91337 0.92094 0.90642 0.90058 0.77096 0.91346 0.89690 0.92892 0.86190 0.87172 0.87425 0.87376 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.13 10.57 -39.28 -0.42 -3.54 16 3 C 0.46 4.86 8.03 36.00 0.29 5.15 16 4 O -0.48 -7.26 16.25 -25.47 -0.41 -7.68 16 5 C 0.07 0.55 6.53 36.00 0.24 0.79 16 6 O -0.36 -4.07 9.82 -55.18 -0.54 -4.61 16 7 C 0.05 0.46 6.07 37.15 0.23 0.68 16 8 C 0.12 1.62 6.06 -4.04 -0.02 1.59 16 9 N -0.74 -11.23 5.50 -60.29 -0.33 -11.56 16 10 C 0.51 10.33 7.58 -10.99 -0.08 10.25 16 11 O -0.50 -12.58 14.98 5.56 0.08 -12.50 16 12 C -0.12 -2.22 4.93 -27.88 -0.14 -2.36 16 13 C 0.05 1.14 1.21 -92.92 -0.11 1.03 16 14 H 0.05 1.34 4.87 -51.93 -0.25 1.09 16 15 C -0.48 -13.69 6.97 -34.44 -0.24 -13.93 16 16 H 0.07 2.23 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.50 5.47 -17.82 -0.10 2.40 16 18 N -0.90 -28.85 13.96 55.43 0.77 -28.07 16 19 Si 0.87 23.20 26.62 -169.99 -4.52 18.67 16 20 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.26 -6.77 6.29 56.52 0.36 -6.42 16 22 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 23 C -0.04 -0.84 4.52 -104.62 -0.47 -1.32 16 24 C -0.10 -2.03 8.86 -39.58 -0.35 -2.38 16 25 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 26 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 27 C -0.12 -2.22 10.05 -39.58 -0.40 -2.62 16 28 C -0.14 -2.82 9.08 -39.58 -0.36 -3.18 16 29 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.40 4.91 8.47 -40.82 -0.35 4.56 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 41 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 42 H 0.12 2.41 7.72 -52.49 -0.40 2.00 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.11 2.12 7.91 -52.49 -0.42 1.71 16 LS Contribution 392.82 15.07 5.92 5.92 Total: -1.00 -39.04 392.82 -7.62 -46.67 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.92 Total: 4.87 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.25 Total: -8.16 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.44 Total: -39.63 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -1.29 Total: -28.33 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.52 Total: 18.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.04 -7.62 -46.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600394574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.941 kcal (2) G-P(sol) polarization free energy of solvation -39.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds