Wall clock time and date at job start Tue Mar 31 2020 19:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34238 * 116.99813 * 2 1 4 4 O 1.20823 * 119.99717 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99782 * 180.02562 * 3 2 1 6 6 O 1.42904 * 109.46917 * 180.02562 * 5 3 2 7 7 C 1.42902 * 113.99900 * 180.02562 * 6 5 3 8 8 C 1.52993 * 109.47203 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47066 * 64.99326 * 8 7 6 10 10 C 1.34777 * 119.99960 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99737 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00194 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47010 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.47465 * 305.00010 * 13 12 10 15 15 C 1.50698 * 109.47080 * 65.00685 * 13 12 10 16 16 H 1.08002 * 120.00223 * 26.94016 * 15 13 12 17 17 C 1.37886 * 120.00006 * 206.93845 * 15 13 12 18 18 N 1.31507 * 120.00030 * 186.61954 * 17 15 13 19 19 Si 1.86801 * 119.99698 * 6.90022 * 17 15 13 20 20 H 1.48503 * 109.46742 * 274.25466 * 19 17 15 21 21 H 1.48500 * 109.47460 * 34.25082 * 19 17 15 22 22 H 1.48499 * 109.46928 * 154.25467 * 19 17 15 23 23 C 1.50706 * 109.46940 * 184.99987 * 13 12 10 24 24 C 1.38233 * 119.99857 * 297.92917 * 23 13 12 25 25 C 1.38240 * 119.99757 * 179.78388 * 24 23 13 26 26 C 1.38239 * 119.99979 * 0.44453 * 25 24 23 27 27 C 1.38242 * 120.00017 * 359.80708 * 26 25 24 28 28 C 1.38230 * 119.99928 * 118.19592 * 23 13 12 29 29 H 1.09000 * 109.47268 * 300.00218 * 1 2 3 30 30 H 1.09001 * 109.47416 * 59.99991 * 1 2 3 31 31 H 1.09005 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47545 * 59.99861 * 5 3 2 33 33 H 1.09008 * 109.46789 * 299.99360 * 5 3 2 34 34 H 1.08998 * 109.47286 * 59.99280 * 7 6 5 35 35 H 1.09002 * 109.47039 * 299.99623 * 7 6 5 36 36 H 1.09000 * 109.46918 * 304.99775 * 8 7 6 37 37 H 1.09000 * 109.47323 * 184.99694 * 8 7 6 38 38 H 0.96995 * 120.00055 * 0.02562 * 9 8 7 39 39 H 1.09000 * 109.46914 * 60.00574 * 12 10 9 40 40 H 1.09000 * 109.47087 * 300.00639 * 12 10 9 41 41 H 0.96994 * 119.99996 * 180.27656 * 18 17 15 42 42 H 1.07994 * 120.00554 * 359.97438 * 24 23 13 43 43 H 1.07996 * 120.00426 * 180.26872 * 25 24 23 44 44 H 1.08000 * 120.00114 * 179.82966 * 26 25 24 45 45 H 1.07993 * 120.00100 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.00162 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6454 0.0001 7 6 5.3881 2.8326 -0.0009 8 6 5.7047 4.3294 -0.0007 9 7 5.2355 4.9276 1.2517 10 6 5.4085 6.2454 1.4754 11 8 5.9521 6.9360 0.6397 12 6 4.9264 6.8606 2.7638 13 6 5.2429 8.3575 2.7640 14 1 6.3079 8.5037 2.5844 15 6 4.4519 9.0383 1.6768 16 1 3.5136 8.6172 1.3472 17 6 4.9262 10.1988 1.1028 18 7 4.1786 10.8633 0.2491 19 14 6.6339 10.8228 1.5318 20 1 6.5640 11.6481 2.7644 21 1 7.5399 9.6685 1.7598 22 1 7.1551 11.6477 0.4125 23 6 4.8728 8.9491 4.0998 24 6 3.5586 8.9220 4.5274 25 6 3.2199 9.4607 5.7547 26 6 4.1940 10.0345 6.5502 27 6 5.5075 10.0662 6.1202 28 6 5.8467 9.5236 4.8949 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.9557 0.7810 -0.8907 33 1 3.9563 0.7807 0.8893 34 1 5.8149 2.3714 -0.8915 35 1 5.8164 2.3702 0.8884 36 1 5.2026 4.8071 -0.8420 37 1 6.7814 4.4731 -0.0910 38 1 4.8010 4.3751 1.9201 39 1 5.4286 6.3827 3.6049 40 1 3.8496 6.7172 2.8544 41 1 4.5138 11.6775 -0.1578 42 1 2.7969 8.4774 3.9042 43 1 2.1939 9.4357 6.0908 44 1 3.9290 10.4578 7.5078 45 1 6.2685 10.5141 6.7418 46 1 6.8729 9.5482 4.5590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600394574.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:36 Heat of formation + Delta-G solvation = -165.836391 kcal Electronic energy + Delta-G solvation = -28231.084526 eV Core-core repulsion = 24085.146835 eV Total energy + Delta-G solvation = -4145.937691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52242 -40.76969 -39.85644 -39.00470 -37.47448 -36.06917 -35.42805 -33.73890 -31.66162 -31.52262 -30.43149 -29.53632 -27.82023 -27.31700 -24.51370 -23.47575 -23.16367 -22.28019 -21.73123 -20.79443 -19.04060 -18.84812 -18.19177 -18.01014 -17.86075 -17.41076 -17.18238 -17.04046 -16.44884 -16.18770 -16.00865 -15.68903 -15.37101 -15.01712 -14.78357 -14.51273 -14.40863 -14.22672 -14.05378 -13.85553 -13.75004 -13.45465 -13.32171 -13.06438 -12.95589 -12.81195 -12.74168 -12.33605 -12.07857 -11.90296 -11.85950 -11.79568 -11.51359 -11.48398 -11.04957 -10.82480 -10.69724 -10.50621 -9.92457 -9.63378 -9.31570 -8.23277 -6.19385 0.66975 0.72342 1.09881 1.28430 1.33623 1.35221 1.41947 1.93741 2.38971 2.42507 2.89806 3.06509 3.21425 3.72350 3.96256 4.11274 4.12817 4.20578 4.23776 4.26846 4.30199 4.30480 4.31080 4.32609 4.43147 4.48829 4.50612 4.63680 4.65352 4.70095 4.83334 4.86121 4.91520 5.09888 5.21568 5.28827 5.38285 5.39426 5.62389 5.69331 5.75412 5.81054 6.00549 6.02246 6.32727 6.34936 6.69925 6.76496 6.79294 7.42490 7.56412 8.94565 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.002664 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.115506 B =10507.655248 C =11499.804398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.454 3.546 4 O -0.536 6.536 5 C 0.072 3.928 6 O -0.403 6.403 7 C 0.063 3.937 8 C 0.117 3.883 9 N -0.724 5.724 10 C 0.508 3.492 11 O -0.564 6.564 12 C -0.112 4.112 13 C 0.051 3.949 14 H 0.037 0.963 15 C -0.463 4.463 16 H 0.027 0.973 17 C 0.018 3.982 18 N -0.955 5.955 19 Si 0.925 3.075 20 H -0.259 1.259 21 H -0.253 1.253 22 H -0.298 1.298 23 C -0.063 4.063 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.123 4.123 28 C -0.155 4.155 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.039 0.961 37 H 0.089 0.911 38 H 0.412 0.588 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.259 0.741 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -25.346 8.019 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.298 3.702 4 O -0.425 6.425 5 C -0.005 4.005 6 O -0.324 6.324 7 C -0.013 4.013 8 C -0.007 4.007 9 N -0.378 5.378 10 C 0.295 3.705 11 O -0.441 6.441 12 C -0.152 4.152 13 C 0.032 3.968 14 H 0.055 0.945 15 C -0.500 4.500 16 H 0.046 0.954 17 C -0.178 4.178 18 N -0.597 5.597 19 Si 0.751 3.249 20 H -0.183 1.183 21 H -0.177 1.177 22 H -0.225 1.225 23 C -0.064 4.064 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.140 4.140 28 C -0.174 4.174 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.248 0.752 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.029 -24.276 7.290 25.367 hybrid contribution -0.028 0.637 -0.579 0.861 sum 1.001 -23.639 6.711 24.594 Atomic orbital electron populations 1.23555 0.74629 1.05893 1.02306 1.86448 1.24947 1.31910 1.83964 1.24085 0.92909 0.81324 0.71872 1.90750 1.68069 1.37985 1.45695 1.21956 0.86038 0.85096 1.07388 1.88016 1.24223 1.24080 1.96038 1.22932 0.79771 0.94010 1.04547 1.21414 0.99893 0.92784 0.86631 1.45856 1.62496 1.08491 1.20995 1.21016 0.78260 0.81919 0.89271 1.90708 1.43713 1.61854 1.47815 1.21557 1.02625 0.96310 0.94721 1.18085 0.96844 0.91858 0.90009 0.94454 1.20826 1.05306 1.06998 1.16916 0.95430 1.25662 1.00298 0.96915 0.94909 1.70050 1.38707 1.18071 1.32869 0.86045 0.82414 0.78554 0.77913 1.18336 1.17704 1.22454 1.20512 0.94141 0.97069 0.94689 1.21002 0.95607 1.00939 0.96310 1.21401 1.00400 0.98345 0.94117 1.21345 0.92721 1.00787 1.00888 1.21349 0.97577 0.99401 0.95720 1.21203 0.98839 1.01395 0.95916 0.92295 0.92460 0.84333 0.85556 0.85119 0.88240 0.88739 0.94207 0.89258 0.75213 0.87334 0.89357 0.93213 0.87557 0.84328 0.83407 0.84003 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -5.66 10.57 -51.49 -0.54 -6.20 16 3 C 0.45 9.33 8.03 71.23 0.57 9.91 16 4 O -0.54 -16.90 16.25 28.40 0.46 -16.44 16 5 C 0.07 0.90 6.53 71.23 0.47 1.36 16 6 O -0.40 -8.44 9.82 -129.90 -1.28 -9.71 16 7 C 0.06 0.92 6.07 71.98 0.44 1.36 16 8 C 0.12 3.00 6.06 86.38 0.52 3.53 16 9 N -0.72 -21.71 5.50 -463.06 -2.55 -24.26 16 10 C 0.51 20.97 7.58 87.66 0.66 21.63 16 11 O -0.56 -29.60 14.98 -3.03 -0.05 -29.64 16 12 C -0.11 -4.37 4.93 29.85 0.15 -4.23 16 13 C 0.05 2.47 1.21 -12.29 -0.01 2.45 16 14 H 0.04 1.91 4.87 -2.39 -0.01 1.90 16 15 C -0.46 -27.75 6.97 25.60 0.18 -27.57 16 16 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 17 C 0.02 1.14 5.47 84.66 0.46 1.60 16 18 N -0.96 -64.75 13.96 21.45 0.30 -64.45 16 19 Si 0.92 49.48 26.62 68.60 1.83 51.31 16 20 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.25 -13.00 6.29 99.48 0.63 -12.38 16 22 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 23 C -0.06 -2.73 4.52 -19.87 -0.09 -2.82 16 24 C -0.12 -4.81 8.86 22.27 0.20 -4.61 16 25 C -0.12 -4.06 10.05 22.27 0.22 -3.83 16 26 C -0.14 -4.08 10.05 22.27 0.22 -3.85 16 27 C -0.12 -3.87 10.05 22.27 0.22 -3.64 16 28 C -0.16 -5.98 9.08 22.27 0.20 -5.78 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 31 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.41 9.67 8.47 -92.71 -0.79 8.89 16 39 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.09 3.36 7.69 -2.39 -0.02 3.34 16 41 H 0.26 16.65 8.31 -92.71 -0.77 15.88 16 42 H 0.11 4.41 7.72 -2.91 -0.02 4.39 16 43 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 44 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 45 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 46 H 0.11 4.09 7.91 -2.91 -0.02 4.06 16 Total: -1.00 -93.63 392.82 3.91 -89.72 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.12 Total: 22.63 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.61 Total: -12.95 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.25 Total: -88.71 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: -1.40 Total: -62.00 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.83 Total: 51.31 kcal Total: -93.63 3.91 -89.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600394574.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.117 kcal (2) G-P(sol) polarization free energy of solvation -93.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds