Wall clock time and date at job start Tue Mar 31 2020 19:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99845 * 2 1 4 4 O 1.20827 * 120.00132 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99880 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47047 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.47250 * 305.00141 * 6 5 3 8 8 O 1.42901 * 109.47035 * 65.00067 * 6 5 3 9 9 C 1.52997 * 109.47203 * 184.99695 * 6 5 3 10 10 N 1.46501 * 109.47246 * 179.97438 * 9 6 5 11 11 C 1.34778 * 120.00016 * 180.02562 * 10 9 6 12 12 O 1.21285 * 120.00004 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00087 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47318 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47292 * 55.00220 * 14 13 11 16 16 C 1.50702 * 109.47567 * 295.00261 * 14 13 11 17 17 H 1.07996 * 119.99464 * 325.12553 * 16 14 13 18 18 C 1.37875 * 120.00268 * 145.12299 * 16 14 13 19 19 N 1.31512 * 119.99882 * 184.98944 * 18 16 14 20 20 Si 1.86804 * 120.00007 * 4.99086 * 18 16 14 21 21 H 1.48496 * 109.47075 * 84.72747 * 20 18 16 22 22 H 1.48495 * 109.47093 * 204.73161 * 20 18 16 23 23 H 1.48503 * 109.47139 * 324.72811 * 20 18 16 24 24 C 1.50703 * 109.47248 * 174.99968 * 14 13 11 25 25 C 1.38228 * 119.99984 * 64.69756 * 24 14 13 26 26 C 1.38237 * 120.00130 * 179.81384 * 25 24 14 27 27 C 1.38229 * 119.99846 * 0.38819 * 26 25 24 28 28 C 1.38236 * 120.00395 * 359.86272 * 27 26 25 29 29 C 1.38236 * 119.99804 * 244.96523 * 24 14 13 30 30 H 1.08998 * 109.47369 * 299.99908 * 1 2 3 31 31 H 1.08996 * 109.47270 * 60.00487 * 1 2 3 32 32 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47289 * 299.99380 * 5 3 2 34 34 H 1.09002 * 109.47395 * 60.00138 * 5 3 2 35 35 H 0.96698 * 114.00372 * 60.00109 * 8 6 5 36 36 H 1.09003 * 109.47381 * 300.00365 * 9 6 5 37 37 H 1.09001 * 109.47051 * 60.00086 * 9 6 5 38 38 H 0.97002 * 120.00303 * 0.02562 * 10 9 6 39 39 H 1.09003 * 109.47188 * 300.00241 * 13 11 10 40 40 H 1.09004 * 109.47493 * 59.99899 * 13 11 10 41 41 H 0.97004 * 119.99696 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00236 * 359.97438 * 25 24 14 43 43 H 1.07999 * 119.99787 * 180.23026 * 26 25 24 44 44 H 1.08001 * 119.99856 * 179.83712 * 27 26 25 45 45 H 1.07995 * 120.00649 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.00400 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5381 3.2571 -0.8425 8 8 3.5886 3.3610 1.2203 9 6 5.5227 2.8236 -0.1252 10 7 5.9380 4.2286 -0.1266 11 6 7.2442 4.5451 -0.2285 12 8 8.0756 3.6668 -0.3196 13 6 7.6714 5.9902 -0.2294 14 6 9.1941 6.0718 -0.3545 15 1 9.5158 5.5230 -1.2396 16 6 9.8320 5.4681 0.8701 17 1 9.3593 5.5782 1.8349 18 6 11.0188 4.7754 0.7589 19 7 11.5251 4.1655 1.8083 20 14 11.9078 4.7032 -0.8825 21 1 12.7565 5.9116 -1.0393 22 1 12.7615 3.4891 -0.9301 23 1 10.9120 4.6515 -1.9830 24 6 9.6113 7.5146 -0.4789 25 6 9.3975 8.3887 0.5703 26 6 9.7838 9.7113 0.4578 27 6 10.3765 10.1614 -0.7071 28 6 10.5856 9.2885 -1.7583 29 6 10.2028 7.9650 -1.6443 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 3.9557 0.7810 0.8909 34 1 3.9564 0.7806 -0.8892 35 1 3.9623 2.9535 2.0136 36 1 5.9846 2.3086 0.7171 37 1 5.8366 2.3515 -1.0562 38 1 5.2730 4.9310 -0.0541 39 1 7.2091 6.5053 -1.0714 40 1 7.3580 6.4623 0.7018 41 1 12.3599 3.6778 1.7299 42 1 8.9311 8.0379 1.4791 43 1 9.6201 10.3933 1.2790 44 1 10.6758 11.1953 -0.7960 45 1 11.0482 9.6402 -2.6685 46 1 10.3663 7.2829 -2.4655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600456763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:49 Heat of formation + Delta-G solvation = -151.794355 kcal Electronic energy + Delta-G solvation = -28325.307830 eV Core-core repulsion = 24179.979048 eV Total energy + Delta-G solvation = -4145.328782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80886 -39.31695 -38.51603 -37.73768 -36.51955 -34.29280 -33.67999 -31.99978 -31.62745 -30.20890 -29.31368 -28.35293 -26.94881 -25.43100 -22.83079 -22.25742 -21.82111 -21.17718 -20.14479 -19.13701 -17.98030 -17.35929 -17.11793 -16.94120 -16.56410 -16.14049 -15.91509 -15.69745 -15.06382 -14.57931 -14.54968 -14.15009 -13.94571 -13.78985 -13.66882 -13.52832 -13.01349 -12.74574 -12.64616 -12.53190 -12.41029 -12.26390 -12.21069 -11.85063 -11.71855 -11.25584 -11.12060 -11.09552 -10.78793 -10.77981 -10.51477 -10.43583 -10.30937 -9.85235 -9.59918 -9.07927 -8.97643 -8.62123 -8.41698 -8.22547 -7.81328 -5.97291 -3.93698 1.93802 2.08872 2.14605 2.33308 3.42170 3.46350 3.47319 3.47754 3.58798 4.15162 4.30753 4.44908 4.52438 4.57706 4.69923 4.76051 4.84076 4.87092 5.11173 5.19136 5.22564 5.30737 5.51686 5.55252 5.56260 5.68523 5.79467 5.89877 5.96063 6.04268 6.07341 6.10420 6.24545 6.33871 6.62975 6.70004 6.83674 6.84717 7.04810 7.13999 7.26521 7.41917 7.46619 7.59212 7.73349 7.83535 8.05301 8.54450 9.00518 9.03411 9.67480 11.16001 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.002461 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.349199 B =11374.370240 C =12409.948475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.460 3.540 4 O -0.490 6.490 5 C -0.147 4.147 6 C 0.110 3.890 7 H 0.112 0.888 8 O -0.545 6.545 9 C 0.091 3.909 10 N -0.743 5.743 11 C 0.514 3.486 12 O -0.501 6.501 13 C -0.115 4.115 14 C 0.046 3.954 15 H 0.057 0.943 16 C -0.484 4.484 17 H 0.071 0.929 18 C 0.086 3.914 19 N -0.899 5.899 20 Si 0.871 3.129 21 H -0.277 1.277 22 H -0.292 1.292 23 H -0.261 1.261 24 C -0.040 4.040 25 C -0.101 4.101 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.124 4.124 29 C -0.141 4.141 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.375 0.625 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.399 0.601 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.909 -2.785 -4.983 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.376 6.376 5 C -0.186 4.186 6 C 0.050 3.950 7 H 0.130 0.870 8 O -0.350 6.350 9 C -0.034 4.034 10 N -0.399 5.399 11 C 0.301 3.699 12 O -0.372 6.372 13 C -0.155 4.155 14 C 0.027 3.973 15 H 0.075 0.925 16 C -0.521 4.521 17 H 0.089 0.911 18 C -0.116 4.116 19 N -0.537 5.537 20 Si 0.699 3.301 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.186 1.186 24 C -0.041 4.041 25 C -0.119 4.119 26 C -0.144 4.144 27 C -0.168 4.168 28 C -0.143 4.143 29 C -0.159 4.159 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.223 0.777 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.664 -2.884 -5.389 18.691 hybrid contribution 0.502 -0.220 -0.340 0.645 sum -17.162 -3.104 -5.729 18.357 Atomic orbital electron populations 1.23254 0.76275 1.03634 1.02609 1.86505 1.23516 1.33684 1.84401 1.23560 0.91941 0.81396 0.72881 1.90728 1.66912 1.36061 1.43911 1.22139 0.88531 1.00594 1.07307 1.21968 0.93187 0.90291 0.89537 0.87017 1.86694 1.73487 1.59692 1.15103 1.21829 0.93050 0.85313 1.03167 1.45987 1.08590 1.06899 1.78426 1.20835 0.80915 0.92487 0.75691 1.90746 1.50655 1.50012 1.45817 1.21628 0.99762 0.91942 1.02173 1.18306 0.90249 0.88413 1.00344 0.92456 1.20592 1.06770 1.32082 0.92675 0.91099 1.24865 0.96978 0.93953 0.95823 1.69886 1.20340 1.33714 1.29757 0.86960 0.79780 0.77349 0.85977 1.20262 1.21842 1.18645 1.20799 0.94412 0.97107 0.91736 1.20978 0.99984 0.92349 0.98634 1.21066 0.99889 0.96165 0.97291 1.20862 1.02527 0.98873 0.94520 1.20962 1.00857 0.94007 0.98429 1.21082 1.01464 0.95344 0.97989 0.91849 0.91913 0.88140 0.86783 0.86304 0.77733 0.91107 0.90889 0.76712 0.91363 0.89773 0.92879 0.86175 0.87148 0.87401 0.87345 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.24 10.56 -39.24 -0.41 -3.65 16 3 C 0.46 4.51 7.84 36.01 0.28 4.80 16 4 O -0.49 -6.37 15.17 -24.06 -0.36 -6.74 16 5 C -0.15 -1.07 5.49 -27.88 -0.15 -1.23 16 6 C 0.11 1.02 2.60 -26.73 -0.07 0.95 16 7 H 0.11 1.11 7.96 -51.93 -0.41 0.70 16 8 O -0.55 -5.76 12.32 -49.68 -0.61 -6.37 16 9 C 0.09 1.07 5.34 -4.04 -0.02 1.05 16 10 N -0.74 -10.50 5.45 -60.29 -0.33 -10.82 16 11 C 0.51 9.84 7.58 -10.99 -0.08 9.76 16 12 O -0.50 -12.05 14.98 5.55 0.08 -11.96 16 13 C -0.11 -2.13 4.96 -27.89 -0.14 -2.27 16 14 C 0.05 1.05 1.21 -92.92 -0.11 0.94 16 15 H 0.06 1.41 4.70 -51.93 -0.24 1.16 16 16 C -0.48 -13.22 6.87 -34.44 -0.24 -13.46 16 17 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 18 C 0.09 2.52 5.47 -17.82 -0.10 2.43 16 19 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 20 Si 0.87 22.70 27.15 -169.99 -4.62 18.09 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 23 H -0.26 -6.56 6.06 56.52 0.34 -6.21 16 24 C -0.04 -0.83 4.55 -104.62 -0.48 -1.31 16 25 C -0.10 -1.97 8.87 -39.59 -0.35 -2.32 16 26 C -0.13 -2.15 10.05 -39.59 -0.40 -2.54 16 27 C -0.15 -2.44 10.05 -39.59 -0.40 -2.83 16 28 C -0.12 -2.13 10.05 -39.58 -0.40 -2.53 16 29 C -0.14 -2.75 9.43 -39.58 -0.37 -3.12 16 30 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.38 2.89 9.05 45.56 0.41 3.30 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 4.80 8.35 -40.82 -0.34 4.46 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.12 2.30 7.80 -52.49 -0.41 1.89 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 46 H 0.11 2.06 7.95 -52.49 -0.42 1.64 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -37.20 390.09 -7.64 -44.84 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.09 Total: 8.37 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.96 Total: -10.40 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.45 Total: -38.06 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.31 Total: -28.72 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.62 Total: 18.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.20 -7.64 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600456763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.951 kcal (2) G-P(sol) polarization free energy of solvation -37.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds