Wall clock time and date at job start Tue Mar 31 2020 19:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99845 * 2 1 4 4 O 1.20827 * 120.00132 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99880 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47047 * 179.97438 * 5 3 2 7 7 H 1.09003 * 109.47250 * 305.00141 * 6 5 3 8 8 O 1.42901 * 109.47035 * 65.00067 * 6 5 3 9 9 C 1.52997 * 109.47203 * 184.99695 * 6 5 3 10 10 N 1.46501 * 109.47246 * 179.97438 * 9 6 5 11 11 C 1.34778 * 120.00016 * 180.02562 * 10 9 6 12 12 O 1.21285 * 120.00004 * 0.02562 * 11 10 9 13 13 C 1.50694 * 120.00087 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47318 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47292 * 55.00220 * 14 13 11 16 16 C 1.50702 * 109.47567 * 295.00261 * 14 13 11 17 17 H 1.07996 * 119.99464 * 325.12553 * 16 14 13 18 18 C 1.37875 * 120.00268 * 145.12299 * 16 14 13 19 19 N 1.31512 * 119.99882 * 184.98944 * 18 16 14 20 20 Si 1.86804 * 120.00007 * 4.99086 * 18 16 14 21 21 H 1.48496 * 109.47075 * 84.72747 * 20 18 16 22 22 H 1.48495 * 109.47093 * 204.73161 * 20 18 16 23 23 H 1.48503 * 109.47139 * 324.72811 * 20 18 16 24 24 C 1.50703 * 109.47248 * 174.99968 * 14 13 11 25 25 C 1.38228 * 119.99984 * 64.69756 * 24 14 13 26 26 C 1.38237 * 120.00130 * 179.81384 * 25 24 14 27 27 C 1.38229 * 119.99846 * 0.38819 * 26 25 24 28 28 C 1.38236 * 120.00395 * 359.86272 * 27 26 25 29 29 C 1.38236 * 119.99804 * 244.96523 * 24 14 13 30 30 H 1.08998 * 109.47369 * 299.99908 * 1 2 3 31 31 H 1.08996 * 109.47270 * 60.00487 * 1 2 3 32 32 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47289 * 299.99380 * 5 3 2 34 34 H 1.09002 * 109.47395 * 60.00138 * 5 3 2 35 35 H 0.96698 * 114.00372 * 60.00109 * 8 6 5 36 36 H 1.09003 * 109.47381 * 300.00365 * 9 6 5 37 37 H 1.09001 * 109.47051 * 60.00086 * 9 6 5 38 38 H 0.97002 * 120.00303 * 0.02562 * 10 9 6 39 39 H 1.09003 * 109.47188 * 300.00241 * 13 11 10 40 40 H 1.09004 * 109.47493 * 59.99899 * 13 11 10 41 41 H 0.97004 * 119.99696 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.00236 * 359.97438 * 25 24 14 43 43 H 1.07999 * 119.99787 * 180.23026 * 26 25 24 44 44 H 1.08001 * 119.99856 * 179.83712 * 27 26 25 45 45 H 1.07995 * 120.00649 * 179.97438 * 28 27 26 46 46 H 1.07999 * 120.00400 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 1 3.5381 3.2571 -0.8425 8 8 3.5886 3.3610 1.2203 9 6 5.5227 2.8236 -0.1252 10 7 5.9380 4.2286 -0.1266 11 6 7.2442 4.5451 -0.2285 12 8 8.0756 3.6668 -0.3196 13 6 7.6714 5.9902 -0.2294 14 6 9.1941 6.0718 -0.3545 15 1 9.5158 5.5230 -1.2396 16 6 9.8320 5.4681 0.8701 17 1 9.3593 5.5782 1.8349 18 6 11.0188 4.7754 0.7589 19 7 11.5251 4.1655 1.8083 20 14 11.9078 4.7032 -0.8825 21 1 12.7565 5.9116 -1.0393 22 1 12.7615 3.4891 -0.9301 23 1 10.9120 4.6515 -1.9830 24 6 9.6113 7.5146 -0.4789 25 6 9.3975 8.3887 0.5703 26 6 9.7838 9.7113 0.4578 27 6 10.3765 10.1614 -0.7071 28 6 10.5856 9.2885 -1.7583 29 6 10.2028 7.9650 -1.6443 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 3.9557 0.7810 0.8909 34 1 3.9564 0.7806 -0.8892 35 1 3.9623 2.9535 2.0136 36 1 5.9846 2.3086 0.7171 37 1 5.8366 2.3515 -1.0562 38 1 5.2730 4.9310 -0.0541 39 1 7.2091 6.5053 -1.0714 40 1 7.3580 6.4623 0.7018 41 1 12.3599 3.6778 1.7299 42 1 8.9311 8.0379 1.4791 43 1 9.6201 10.3933 1.2790 44 1 10.6758 11.1953 -0.7960 45 1 11.0482 9.6402 -2.6685 46 1 10.3663 7.2829 -2.4655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600456763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:48 Heat of formation + Delta-G solvation = -179.057749 kcal Electronic energy + Delta-G solvation = -28326.490060 eV Core-core repulsion = 24179.979048 eV Total energy + Delta-G solvation = -4146.511012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56809 -40.75195 -39.85489 -38.72816 -37.32733 -35.91594 -35.05464 -33.70747 -32.77226 -31.59928 -30.63913 -29.27211 -28.12742 -26.90414 -24.33379 -23.36713 -23.13834 -22.01756 -21.50356 -20.68656 -19.01705 -18.79995 -18.19949 -17.97370 -17.81667 -17.20987 -16.91300 -16.69412 -16.43583 -16.23359 -15.85034 -15.57865 -15.34324 -14.81898 -14.77219 -14.47444 -14.30209 -14.26993 -14.12713 -13.90052 -13.73817 -13.38243 -13.28959 -12.97303 -12.89585 -12.81111 -12.70311 -12.04691 -12.03301 -11.87705 -11.80168 -11.79020 -11.56953 -11.45998 -11.23740 -10.99542 -10.72182 -10.46171 -9.91958 -9.62574 -9.30028 -8.20322 -6.16283 0.68121 0.73477 1.19910 1.31738 1.34686 1.40714 1.67346 1.96930 2.41157 2.42927 3.08960 3.23529 3.43340 3.57805 3.64746 3.98529 4.10165 4.14393 4.23456 4.31166 4.31632 4.32510 4.32995 4.40378 4.46780 4.51347 4.60537 4.66129 4.71584 4.76388 4.85857 4.88371 5.00670 5.12554 5.22680 5.39037 5.39742 5.41654 5.62410 5.71944 5.76840 5.83247 6.03296 6.34133 6.37960 6.72541 6.73707 6.79524 6.82535 7.46889 7.58049 8.97029 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015920 B = 0.002461 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.349199 B =11374.370240 C =12409.948475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.462 3.538 4 O -0.528 6.528 5 C -0.142 4.142 6 C 0.124 3.876 7 H 0.108 0.892 8 O -0.562 6.562 9 C 0.091 3.909 10 N -0.724 5.724 11 C 0.511 3.489 12 O -0.559 6.559 13 C -0.113 4.113 14 C 0.049 3.951 15 H 0.038 0.962 16 C -0.461 4.461 17 H 0.035 0.965 18 C 0.024 3.976 19 N -0.953 5.953 20 Si 0.921 3.079 21 H -0.268 1.268 22 H -0.298 1.298 23 H -0.249 1.249 24 C -0.065 4.065 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.123 4.123 29 C -0.157 4.157 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.387 0.613 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.412 0.588 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.258 0.742 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.922 -1.076 -6.612 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.306 3.694 4 O -0.417 6.417 5 C -0.180 4.180 6 C 0.064 3.936 7 H 0.126 0.874 8 O -0.369 6.369 9 C -0.034 4.034 10 N -0.379 5.379 11 C 0.298 3.702 12 O -0.435 6.435 13 C -0.153 4.153 14 C 0.029 3.971 15 H 0.057 0.943 16 C -0.499 4.499 17 H 0.053 0.947 18 C -0.172 4.172 19 N -0.595 5.595 20 Si 0.748 3.252 21 H -0.193 1.193 22 H -0.225 1.225 23 H -0.174 1.174 24 C -0.065 4.065 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.159 4.159 28 C -0.141 4.141 29 C -0.175 4.175 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.236 0.764 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -18.748 -1.158 -7.030 20.057 hybrid contribution 0.647 -0.653 0.202 0.941 sum -18.101 -1.811 -6.829 19.431 Atomic orbital electron populations 1.23502 0.75036 1.05530 1.02363 1.86500 1.24824 1.33120 1.83965 1.23936 0.92673 0.81082 0.71665 1.90716 1.67869 1.37211 1.45888 1.22137 0.87077 0.99320 1.09436 1.21786 0.90973 0.91702 0.89111 0.87425 1.86666 1.73756 1.60503 1.15960 1.21978 0.94765 0.83524 1.03089 1.45774 1.07221 1.08672 1.76197 1.20967 0.81939 0.92192 0.75089 1.90726 1.52495 1.51318 1.49003 1.21568 0.97306 0.92341 1.04053 1.18155 0.92503 0.89476 0.96930 0.94337 1.20801 1.05587 1.30496 0.93021 0.94680 1.25583 0.98398 0.94616 0.98599 1.70030 1.21238 1.36346 1.31842 0.86145 0.78887 0.77175 0.83003 1.19311 1.22524 1.17389 1.20547 0.96506 0.96068 0.93410 1.21024 1.01053 0.93676 0.97996 1.21409 0.98801 0.95345 0.98674 1.21339 1.00527 1.00574 0.93414 1.21345 0.99886 0.92906 0.99986 1.21222 1.01850 0.96866 0.97594 0.92256 0.92063 0.85224 0.84737 0.84018 0.76417 0.91826 0.90507 0.75186 0.87956 0.88898 0.93309 0.87185 0.84292 0.83570 0.84173 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.37 -6.00 10.56 -51.35 -0.54 -6.54 16 3 C 0.46 8.51 7.84 71.24 0.56 9.07 16 4 O -0.53 -13.43 15.17 27.03 0.41 -13.02 16 5 C -0.14 -1.81 5.49 29.85 0.16 -1.65 16 6 C 0.12 2.15 2.60 30.59 0.08 2.23 16 7 H 0.11 2.00 7.96 -2.39 -0.02 1.98 16 8 O -0.56 -11.31 12.32 -135.16 -1.66 -12.97 16 9 C 0.09 2.05 5.34 86.38 0.46 2.51 16 10 N -0.72 -19.98 5.45 -463.06 -2.52 -22.50 16 11 C 0.51 19.68 7.58 87.65 0.66 20.34 16 12 O -0.56 -27.64 14.98 -3.04 -0.05 -27.68 16 13 C -0.11 -4.15 4.96 29.85 0.15 -4.00 16 14 C 0.05 2.23 1.21 -12.29 -0.01 2.22 16 15 H 0.04 1.91 4.70 -2.39 -0.01 1.90 16 16 C -0.46 -26.13 6.87 25.60 0.18 -25.96 16 17 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 18 C 0.02 1.47 5.47 84.65 0.46 1.94 16 19 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 20 Si 0.92 48.01 27.15 68.60 1.86 49.87 16 21 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 23 H -0.25 -12.36 6.06 99.48 0.60 -11.76 16 24 C -0.06 -2.66 4.55 -19.87 -0.09 -2.75 16 25 C -0.12 -4.52 8.87 22.27 0.20 -4.32 16 26 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 27 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 28 C -0.12 -3.76 10.05 22.27 0.22 -3.54 16 29 C -0.16 -5.84 9.43 22.27 0.21 -5.63 16 30 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 31 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.39 5.59 9.05 -74.06 -0.67 4.92 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 9.36 8.35 -92.71 -0.77 8.59 16 39 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.09 3.23 7.86 -2.39 -0.02 3.22 16 41 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 42 H 0.11 4.26 7.80 -2.91 -0.02 4.24 16 43 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 44 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 45 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 46 H 0.11 3.94 7.95 -2.91 -0.02 3.92 16 Total: -1.00 -84.80 390.09 2.14 -82.66 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: -0.54 Total: 27.39 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.88 Total: -15.34 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -2.22 Total: -84.37 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -1.84 Total: -60.21 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.86 Total: 49.87 kcal Total: -84.80 2.14 -82.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600456763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.394 kcal (2) G-P(sol) polarization free energy of solvation -84.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds