Wall clock time and date at job start Tue Mar 31 2020 18:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81003 * 109.46982 * 2 1 4 4 C 1.76198 * 100.00058 * 180.02562 * 3 2 1 5 5 C 1.39474 * 119.54689 * 179.72461 * 4 3 2 6 6 C 1.36806 * 119.37839 * 179.76181 * 5 4 3 7 7 C 1.40399 * 118.49869 * 0.50727 * 6 5 4 8 8 C 1.47498 * 120.47168 * 179.76595 * 7 6 5 9 9 O 1.21595 * 120.00019 * 131.09169 * 8 7 6 10 10 N 1.34780 * 119.99907 * 311.08835 * 8 7 6 11 11 C 1.47079 * 120.87902 * 183.53436 * 10 8 7 12 12 C 1.53699 * 108.27407 * 128.75712 * 11 10 8 13 13 N 1.46894 * 109.25879 * 54.08153 * 12 11 10 14 14 C 1.46901 * 111.00038 * 172.60646 * 13 12 11 15 15 C 1.50693 * 109.47186 * 294.29943 * 14 13 12 16 16 H 1.07999 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00212 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99819 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00131 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47368 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47521 * 119.99824 * 19 17 15 22 22 H 1.48501 * 109.47012 * 239.99697 * 19 17 15 23 23 C 1.46901 * 111.26797 * 296.75586 * 13 12 11 24 24 C 1.47078 * 120.87985 * 3.80823 * 10 8 7 25 25 C 1.39587 * 119.05495 * 359.73968 * 7 6 5 26 26 N 1.31651 * 120.52739 * 0.02562 * 25 7 6 27 27 H 1.09002 * 109.46831 * 299.99786 * 1 2 3 28 28 H 1.08999 * 109.47257 * 59.99850 * 1 2 3 29 29 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47457 * 119.99644 * 2 1 3 31 31 H 1.08997 * 109.47093 * 240.00608 * 2 1 3 32 32 H 1.08005 * 120.31094 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.75007 * 180.22159 * 6 5 4 34 34 H 1.09007 * 109.62555 * 248.52047 * 11 10 8 35 35 H 1.08995 * 109.62862 * 9.10065 * 11 10 8 36 36 H 1.08992 * 109.64606 * 294.07133 * 12 11 10 37 37 H 1.09004 * 109.41640 * 173.94730 * 12 11 10 38 38 H 1.08999 * 109.47189 * 54.29925 * 14 13 12 39 39 H 1.09004 * 109.47141 * 174.29889 * 14 13 12 40 40 H 0.97002 * 119.99764 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.48872 * 303.14439 * 23 13 12 42 42 H 1.09004 * 109.49472 * 183.06719 * 23 13 12 43 43 H 1.09003 * 109.63037 * 350.89927 * 24 10 8 44 44 H 1.09006 * 109.62608 * 111.47482 * 24 10 8 45 45 H 1.08003 * 119.73488 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1334 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.7494 2.5003 -0.0068 6 6 6.0981 2.2713 -0.0024 7 6 6.5520 0.9427 -0.0029 8 6 7.9968 0.6459 -0.0035 9 8 8.4534 -0.1546 0.7898 10 7 8.8110 1.2619 -0.8834 11 6 10.2408 0.9242 -0.9530 12 6 10.5938 0.6219 -2.4181 13 7 10.1817 1.7535 -3.2592 14 6 10.6565 1.5842 -4.6390 15 6 12.1622 1.6402 -4.6626 16 1 12.7115 1.7873 -3.7445 17 6 12.8385 1.5047 -5.8564 18 7 12.1696 1.3260 -6.9745 19 14 14.7050 1.5734 -5.8855 20 1 15.2143 1.7808 -4.5060 21 1 15.2391 0.2967 -6.4240 22 1 15.1456 2.6979 -6.7496 23 6 8.7252 1.9417 -3.2230 24 6 8.2944 2.2938 -1.7952 25 6 5.6165 -0.0933 -0.0022 26 7 4.3267 0.1704 -0.0016 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 4.3681 3.5108 -0.0106 33 1 6.7979 3.0939 -0.0034 34 1 10.8337 1.7667 -0.5967 35 1 10.4401 0.0465 -0.3383 36 1 10.0743 -0.2800 -2.7416 37 1 11.6700 0.4744 -2.5085 38 1 10.3227 0.6200 -5.0224 39 1 10.2534 2.3823 -5.2625 40 1 12.6454 1.2303 -7.8144 41 1 8.2317 1.0214 -3.5353 42 1 8.4462 2.7515 -3.8973 43 1 7.2062 2.3219 -1.7375 44 1 8.7037 3.2653 -1.5183 45 1 5.9535 -1.1194 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:51 Heat of formation + Delta-G solvation = 11.315854 kcal Electronic energy + Delta-G solvation = -26031.728682 eV Core-core repulsion = 22368.518511 eV Total energy + Delta-G solvation = -3663.210171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94796 -39.37063 -37.53320 -34.64459 -33.48484 -32.95199 -32.38713 -31.85436 -30.65258 -28.36797 -25.96148 -25.00522 -24.22443 -23.65729 -22.98810 -22.11164 -20.84255 -19.19425 -18.26876 -17.49921 -16.88303 -16.42802 -16.14056 -15.86554 -15.35044 -15.11684 -14.80440 -14.74749 -14.49605 -14.25543 -14.21056 -13.85358 -13.71642 -13.58846 -13.10691 -12.81922 -12.71424 -12.32966 -12.04211 -11.97240 -11.89591 -11.33987 -11.26935 -10.92781 -10.85408 -10.81518 -10.67458 -10.60857 -10.38564 -10.19979 -10.11365 -9.92672 -9.68225 -9.29862 -8.60977 -8.49709 -7.95569 -7.40054 -6.09926 -4.11912 0.32582 0.87158 1.10762 1.77829 2.54902 2.93831 3.26942 3.34783 3.36611 3.39105 4.09716 4.31890 4.36187 4.46381 4.54260 4.56539 4.63231 4.70897 4.76913 4.98923 5.13237 5.24117 5.28630 5.31380 5.35809 5.39746 5.41911 5.49457 5.57665 5.64293 5.65190 5.73380 5.85935 5.92128 6.10320 6.13148 6.31578 6.45952 6.62798 7.16017 7.22067 7.28097 7.40579 7.70084 7.95270 8.05566 8.07860 8.42240 8.95578 9.52957 11.00903 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.002225 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.199066 B =12580.097547 C =13172.097700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 S -0.067 6.067 4 C 0.132 3.868 5 C -0.155 4.155 6 C -0.029 4.029 7 C -0.180 4.180 8 C 0.563 3.437 9 O -0.539 6.539 10 N -0.598 5.598 11 C 0.115 3.885 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.040 3.960 24 C 0.103 3.897 25 C 0.167 3.833 26 N -0.490 5.490 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.099 0.901 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 1.352 14.271 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.251 4.251 3 S 0.174 5.826 4 C -0.117 4.117 5 C -0.181 4.181 6 C -0.056 4.056 7 C -0.188 4.188 8 C 0.350 3.650 9 O -0.417 6.417 10 N -0.330 5.330 11 C -0.007 4.007 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.090 4.090 24 C -0.019 4.019 25 C 0.006 3.994 26 N -0.203 5.203 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -21.609 1.642 14.669 26.169 hybrid contribution 2.026 -1.091 -0.699 2.405 sum -19.583 0.551 13.970 24.062 Atomic orbital electron populations 1.21601 0.92273 1.03168 1.03017 1.23422 0.99352 0.95132 1.07173 1.85778 0.93617 1.12495 1.90718 1.23314 0.99229 0.91806 0.97401 1.21360 0.92956 0.99731 1.04021 1.21465 0.95723 0.96065 0.92357 1.20916 0.95130 0.95237 1.07526 1.17984 0.85267 0.80879 0.80897 1.90798 1.76482 1.35470 1.38994 1.48176 1.10004 1.39015 1.35815 1.22027 0.78806 1.01791 0.98027 1.22437 1.02604 0.91990 0.90801 1.62101 1.08483 1.40813 1.14638 1.19733 0.95991 0.95665 0.81732 1.21168 0.90892 1.49089 0.93664 0.91699 1.25001 0.98787 0.95312 0.95525 1.69966 1.35545 1.49811 0.98354 0.86431 0.85212 0.77545 0.78172 1.19597 1.21099 1.20998 1.22390 0.91125 1.00506 0.94932 1.22221 0.98730 0.91174 0.89820 1.22805 0.86685 0.99399 0.90479 1.68130 1.16565 1.19942 1.15638 0.91723 0.91649 0.90613 0.88765 0.88697 0.83639 0.83403 0.90561 0.89196 0.95620 0.88297 0.99083 0.95008 0.92902 0.95484 0.89924 0.89851 0.90195 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.92 37.16 0.37 -0.38 16 2 C -0.10 -0.76 5.54 37.16 0.21 -0.55 16 3 S -0.07 -0.57 22.05 -107.50 -2.37 -2.94 16 4 C 0.13 1.38 6.98 -16.72 -0.12 1.26 16 5 C -0.15 -1.42 9.77 -39.64 -0.39 -1.81 16 6 C -0.03 -0.28 7.44 -39.29 -0.29 -0.57 16 7 C -0.18 -2.19 5.06 -104.81 -0.53 -2.72 16 8 C 0.56 8.30 7.27 -12.48 -0.09 8.21 16 9 O -0.54 -9.57 16.50 5.28 0.09 -9.48 16 10 N -0.60 -8.69 3.00 -173.42 -0.52 -9.21 16 11 C 0.12 1.81 6.62 -3.36 -0.02 1.78 16 12 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 13 N -0.54 -10.76 4.62 -235.47 -1.09 -11.85 16 14 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 15 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 16 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.04 0.66 5.62 -3.70 -0.02 0.63 16 24 C 0.10 1.33 5.44 -3.61 -0.02 1.31 16 25 C 0.17 2.00 10.89 -17.13 -0.19 1.82 16 26 N -0.49 -5.70 9.10 -11.67 -0.11 -5.80 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.74 8.12 -51.92 -0.42 0.32 16 31 H 0.09 0.76 8.12 -51.92 -0.42 0.34 16 32 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.15 1.17 6.99 -52.49 -0.37 0.80 16 34 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.09 1.40 7.08 -51.93 -0.37 1.04 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 38 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 43 H 0.08 0.90 4.64 -51.93 -0.24 0.66 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.17 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -31.54 378.25 -10.83 -42.37 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.73 Total: -1.65 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.52 Total: 2.10 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.98 Total: -52.20 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.37 Total: -2.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.54 -10.83 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.684 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds