Wall clock time and date at job start Tue Mar 31 2020 18:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81003 * 109.46982 * 2 1 4 4 C 1.76198 * 100.00058 * 180.02562 * 3 2 1 5 5 C 1.39474 * 119.54689 * 179.72461 * 4 3 2 6 6 C 1.36806 * 119.37839 * 179.76181 * 5 4 3 7 7 C 1.40399 * 118.49869 * 0.50727 * 6 5 4 8 8 C 1.47498 * 120.47168 * 179.76595 * 7 6 5 9 9 O 1.21595 * 120.00019 * 131.09169 * 8 7 6 10 10 N 1.34780 * 119.99907 * 311.08835 * 8 7 6 11 11 C 1.47079 * 120.87902 * 183.53436 * 10 8 7 12 12 C 1.53699 * 108.27407 * 128.75712 * 11 10 8 13 13 N 1.46894 * 109.25879 * 54.08153 * 12 11 10 14 14 C 1.46901 * 111.00038 * 172.60646 * 13 12 11 15 15 C 1.50693 * 109.47186 * 294.29943 * 14 13 12 16 16 H 1.07999 * 120.00218 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00212 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99819 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00131 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47368 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47521 * 119.99824 * 19 17 15 22 22 H 1.48501 * 109.47012 * 239.99697 * 19 17 15 23 23 C 1.46901 * 111.26797 * 296.75586 * 13 12 11 24 24 C 1.47078 * 120.87985 * 3.80823 * 10 8 7 25 25 C 1.39587 * 119.05495 * 359.73968 * 7 6 5 26 26 N 1.31651 * 120.52739 * 0.02562 * 25 7 6 27 27 H 1.09002 * 109.46831 * 299.99786 * 1 2 3 28 28 H 1.08999 * 109.47257 * 59.99850 * 1 2 3 29 29 H 1.08999 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47457 * 119.99644 * 2 1 3 31 31 H 1.08997 * 109.47093 * 240.00608 * 2 1 3 32 32 H 1.08005 * 120.31094 * 0.02562 * 5 4 3 33 33 H 1.08000 * 120.75007 * 180.22159 * 6 5 4 34 34 H 1.09007 * 109.62555 * 248.52047 * 11 10 8 35 35 H 1.08995 * 109.62862 * 9.10065 * 11 10 8 36 36 H 1.08992 * 109.64606 * 294.07133 * 12 11 10 37 37 H 1.09004 * 109.41640 * 173.94730 * 12 11 10 38 38 H 1.08999 * 109.47189 * 54.29925 * 14 13 12 39 39 H 1.09004 * 109.47141 * 174.29889 * 14 13 12 40 40 H 0.97002 * 119.99764 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.48872 * 303.14439 * 23 13 12 42 42 H 1.09004 * 109.49472 * 183.06719 * 23 13 12 43 43 H 1.09003 * 109.63037 * 350.89927 * 24 10 8 44 44 H 1.09006 * 109.62608 * 111.47482 * 24 10 8 45 45 H 1.08003 * 119.73488 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1334 1.7065 0.0000 4 6 3.8713 1.4166 -0.0008 5 6 4.7494 2.5003 -0.0068 6 6 6.0981 2.2713 -0.0024 7 6 6.5520 0.9427 -0.0029 8 6 7.9968 0.6459 -0.0035 9 8 8.4534 -0.1546 0.7898 10 7 8.8110 1.2619 -0.8834 11 6 10.2408 0.9242 -0.9530 12 6 10.5938 0.6219 -2.4181 13 7 10.1817 1.7535 -3.2592 14 6 10.6565 1.5842 -4.6390 15 6 12.1622 1.6402 -4.6626 16 1 12.7115 1.7873 -3.7445 17 6 12.8385 1.5047 -5.8564 18 7 12.1696 1.3260 -6.9745 19 14 14.7050 1.5734 -5.8855 20 1 15.2143 1.7808 -4.5060 21 1 15.2391 0.2967 -6.4240 22 1 15.1456 2.6979 -6.7496 23 6 8.7252 1.9417 -3.2230 24 6 8.2944 2.2938 -1.7952 25 6 5.6165 -0.0933 -0.0022 26 7 4.3267 0.1704 -0.0016 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 4.3681 3.5108 -0.0106 33 1 6.7979 3.0939 -0.0034 34 1 10.8337 1.7667 -0.5967 35 1 10.4401 0.0465 -0.3383 36 1 10.0743 -0.2800 -2.7416 37 1 11.6700 0.4744 -2.5085 38 1 10.3227 0.6200 -5.0224 39 1 10.2534 2.3823 -5.2625 40 1 12.6454 1.2303 -7.8144 41 1 8.2317 1.0214 -3.5353 42 1 8.4462 2.7515 -3.8973 43 1 7.2062 2.3219 -1.7375 44 1 8.7037 3.2653 -1.5183 45 1 5.9535 -1.1194 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:50 Heat of formation + Delta-G solvation = -8.448042 kcal Electronic energy + Delta-G solvation = -26032.585709 eV Core-core repulsion = 22368.518511 eV Total energy + Delta-G solvation = -3664.067198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.94025 -40.44770 -38.94242 -36.12563 -34.59042 -34.07967 -33.55482 -32.75599 -31.90270 -30.04700 -27.51027 -26.09249 -25.12424 -24.59230 -23.99350 -23.73546 -22.21256 -20.40783 -19.04345 -18.65288 -18.45341 -17.78541 -17.30063 -16.70343 -16.56221 -16.28550 -16.02205 -15.88757 -15.64485 -15.44258 -15.33774 -15.08785 -15.02604 -14.52145 -14.30381 -14.08073 -13.84401 -13.52567 -13.26235 -13.08798 -12.77678 -12.62819 -12.59504 -12.45991 -12.36522 -12.36094 -12.21061 -11.77416 -11.51409 -11.39586 -11.32556 -11.00756 -10.90440 -10.67441 -10.61810 -9.87405 -9.09939 -8.66575 -8.21667 -6.31376 -0.53017 0.09020 0.40836 1.12134 1.41621 1.42756 1.44022 1.55746 1.81874 2.39853 2.49209 3.10634 3.18769 3.23388 3.39447 3.68825 3.83787 3.92039 3.94491 4.00484 4.01721 4.06786 4.19961 4.22059 4.38585 4.52118 4.53432 4.57382 4.67245 4.75060 4.80968 4.87295 4.89410 4.91388 4.92284 4.97678 5.14302 5.19832 5.21471 5.29738 5.39514 5.63405 6.01567 6.14043 6.29109 6.48676 6.55190 6.84541 6.91376 7.38562 8.89654 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.002225 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.199066 B =12580.097547 C =13172.097700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 S -0.053 6.053 4 C 0.117 3.883 5 C -0.149 4.149 6 C -0.022 4.022 7 C -0.195 4.195 8 C 0.567 3.433 9 O -0.574 6.574 10 N -0.600 5.600 11 C 0.127 3.873 12 C 0.055 3.945 13 N -0.536 5.536 14 C 0.208 3.792 15 C -0.521 4.521 16 H 0.067 0.933 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.261 1.261 21 H -0.282 1.282 22 H -0.279 1.279 23 C 0.036 3.964 24 C 0.114 3.886 25 C 0.157 3.843 26 N -0.503 5.503 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.010 0.990 37 H 0.083 0.917 38 H -0.043 1.043 39 H 0.011 0.989 40 H 0.264 0.736 41 H 0.014 0.986 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.628 3.054 15.550 26.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.251 4.251 3 S 0.189 5.811 4 C -0.132 4.132 5 C -0.174 4.174 6 C -0.049 4.049 7 C -0.204 4.204 8 C 0.356 3.644 9 O -0.455 6.455 10 N -0.332 5.332 11 C 0.005 3.995 12 C -0.074 4.074 13 N -0.260 5.260 14 C 0.082 3.918 15 C -0.560 4.560 16 H 0.085 0.915 17 C -0.197 4.197 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.093 4.093 24 C -0.008 4.008 25 C -0.004 4.004 26 N -0.216 5.216 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.193 0.807 33 H 0.190 0.810 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.028 0.972 37 H 0.101 0.899 38 H -0.025 1.025 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.109 0.891 43 H 0.129 0.871 44 H 0.120 0.880 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.537 3.362 15.964 27.822 hybrid contribution 2.145 -1.641 -1.096 2.915 sum -20.391 1.721 14.868 25.295 Atomic orbital electron populations 1.21609 0.90531 1.04139 1.03396 1.23480 1.00790 0.94333 1.06475 1.85717 0.92150 1.13176 1.90090 1.23803 1.00651 0.91907 0.96802 1.21699 0.92460 1.00701 1.02547 1.21712 0.96525 0.95436 0.91251 1.20733 0.93289 0.96590 1.09763 1.18301 0.86161 0.79863 0.80076 1.90776 1.77315 1.36941 1.40463 1.48222 1.09500 1.39379 1.36067 1.21813 0.80000 1.02381 0.95351 1.22373 1.01438 0.90985 0.92583 1.62028 1.11088 1.41105 1.11828 1.19381 0.95314 0.92953 0.84149 1.21493 0.92015 1.48628 0.93818 0.91454 1.25912 1.03813 0.94872 0.95144 1.70090 1.37563 1.50855 0.99018 0.85337 0.79159 0.77544 0.78599 1.18476 1.20813 1.20469 1.22537 0.88515 1.00297 0.97925 1.22293 1.00397 0.91314 0.86782 1.22821 0.87082 0.99522 0.90931 1.68149 1.16203 1.20873 1.16368 0.91207 0.91344 0.89382 0.89354 0.89514 0.80701 0.80969 0.89283 0.89219 0.97215 0.89908 1.02510 0.97052 0.92734 0.96742 0.89102 0.87113 0.88044 0.81938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.92 71.98 0.71 -0.50 16 2 C -0.10 -1.39 5.54 71.98 0.40 -0.99 16 3 S -0.05 -0.80 22.05 -56.49 -1.25 -2.04 16 4 C 0.12 2.23 6.98 84.86 0.59 2.82 16 5 C -0.15 -2.26 9.77 22.23 0.22 -2.04 16 6 C -0.02 -0.36 7.44 22.46 0.17 -0.20 16 7 C -0.20 -4.49 5.06 -19.98 -0.10 -4.59 16 8 C 0.57 16.20 7.27 86.68 0.63 16.83 16 9 O -0.57 -20.33 16.50 -4.02 -0.07 -20.40 16 10 N -0.60 -16.61 3.00 -820.84 -2.47 -19.08 16 11 C 0.13 3.89 6.62 86.50 0.57 4.46 16 12 C 0.06 2.09 5.47 86.54 0.47 2.56 16 13 N -0.54 -21.71 4.62 -898.90 -4.15 -25.86 16 14 C 0.21 10.72 4.72 85.55 0.40 11.12 16 15 C -0.52 -28.57 8.41 25.60 0.22 -28.36 16 16 H 0.07 3.59 7.13 -2.91 -0.02 3.57 16 17 C 0.00 0.03 5.46 84.65 0.46 0.50 16 18 N -0.93 -55.41 13.29 21.45 0.28 -55.13 16 19 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 C 0.04 1.17 5.62 86.38 0.49 1.65 16 24 C 0.11 2.67 5.44 86.35 0.47 3.14 16 25 C 0.16 3.71 10.89 85.05 0.93 4.64 16 26 N -0.50 -11.26 9.10 -190.82 -1.74 -12.99 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.09 1.32 8.12 -2.40 -0.02 1.30 16 31 H 0.09 1.33 8.12 -2.40 -0.02 1.31 16 32 H 0.18 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.17 1.97 6.99 -2.91 -0.02 1.95 16 34 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.09 2.78 7.08 -2.39 -0.02 2.77 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 3.37 6.67 -2.38 -0.02 3.35 16 38 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 39 H 0.01 0.63 7.97 -2.38 -0.02 0.61 16 40 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 2.77 7.99 -2.38 -0.02 2.75 16 43 H 0.11 2.04 4.64 -2.39 -0.01 2.03 16 44 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -69.51 378.25 0.26 -69.25 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.99 Total: 9.72 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 6.63 Total: 11.06 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -8.07 Total: -113.06 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.25 Total: -2.04 kcal Total: -69.51 0.26 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.803 kcal (2) G-P(sol) polarization free energy of solvation -69.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds