Wall clock time and date at job start Tue Mar 31 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81405 * 109.47387 * 2 1 4 4 C 1.76205 * 102.99939 * 179.97438 * 3 2 1 5 5 C 1.39183 * 119.65039 * 180.29833 * 4 3 2 6 6 C 1.39472 * 118.92557 * 180.25081 * 5 4 3 7 7 C 1.48159 * 120.87779 * 179.73270 * 6 5 4 8 8 O 1.21519 * 120.00006 * 327.10045 * 7 6 5 9 9 N 1.34773 * 120.00001 * 147.09742 * 7 6 5 10 10 C 1.47083 * 120.88106 * 354.30023 * 9 7 6 11 11 C 1.53241 * 108.52079 * 231.15744 * 10 9 7 12 12 N 1.46898 * 109.34021 * 306.17145 * 11 10 9 13 13 C 1.46900 * 111.00102 * 187.25047 * 12 11 10 14 14 C 1.50692 * 109.47232 * 169.99905 * 13 12 11 15 15 H 1.07997 * 120.00377 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31508 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99879 * 179.72582 * 16 14 13 19 19 H 1.48505 * 109.47222 * 270.27939 * 18 16 14 20 20 H 1.48502 * 109.47222 * 30.27768 * 18 16 14 21 21 H 1.48503 * 109.47231 * 150.27743 * 18 16 14 22 22 C 1.46901 * 111.26880 * 63.10574 * 12 11 10 23 23 C 1.47080 * 120.88151 * 174.27070 * 9 7 6 24 24 C 1.40044 * 118.24335 * 359.45971 * 6 5 4 25 25 C 1.37950 * 119.18584 * 0.27728 * 24 6 5 26 26 N 1.31911 * 121.01112 * 359.97438 * 25 24 6 27 27 H 1.09008 * 109.46868 * 59.99778 * 1 2 3 28 28 H 1.08995 * 109.47664 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46875 * 300.00484 * 1 2 3 30 30 H 1.09001 * 109.47379 * 239.99672 * 2 1 3 31 31 H 1.09011 * 109.47114 * 119.99492 * 2 1 3 32 32 H 1.07999 * 120.53570 * 359.97438 * 5 4 3 33 33 H 1.09000 * 109.62498 * 111.45247 * 10 9 7 34 34 H 1.09000 * 109.78699 * 350.96558 * 10 9 7 35 35 H 1.08989 * 109.49431 * 186.21093 * 11 10 9 36 36 H 1.08998 * 109.48996 * 66.12879 * 11 10 9 37 37 H 1.08999 * 109.46884 * 49.99977 * 13 12 11 38 38 H 1.09003 * 109.47298 * 290.00558 * 13 12 11 39 39 H 0.96996 * 120.00426 * 359.72004 * 17 16 14 40 40 H 1.08998 * 109.49910 * 56.85607 * 22 12 11 41 41 H 1.09006 * 109.49299 * 176.93843 * 22 12 11 42 42 H 1.09001 * 109.63394 * 248.55200 * 23 9 7 43 43 H 1.08999 * 109.62983 * 9.13305 * 23 9 7 44 44 H 1.08000 * 120.40510 * 180.25004 * 24 6 5 45 45 H 1.08004 * 119.49224 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.8855 1.5116 0.0008 5 6 4.7061 2.6358 0.0072 6 6 6.0898 2.4610 0.0024 7 6 7.0035 3.6273 0.0030 8 8 6.6809 4.6523 -0.5645 9 7 8.1925 3.5516 0.6331 10 6 8.5505 2.3683 1.4301 11 6 9.0172 2.8357 2.8128 12 7 10.0905 3.8262 2.6548 13 6 10.6831 4.1721 3.9537 14 6 11.9283 4.9922 3.7354 15 1 12.2474 5.2328 2.7321 16 6 12.6597 5.4362 4.8166 17 7 12.2708 5.1436 6.0384 18 14 14.2075 6.4464 4.5458 19 1 15.3778 5.5389 4.4350 20 1 14.0718 7.2342 3.2943 21 1 14.4035 7.3691 5.6928 22 6 9.6091 5.0273 1.9594 23 6 9.1667 4.6497 0.5416 24 6 6.5927 1.1540 0.0028 25 6 5.7103 0.0937 0.0021 26 7 4.4065 0.2945 0.0016 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2782 3.6274 0.0114 33 1 9.3557 1.8244 0.9364 34 1 7.6817 1.7188 1.5370 35 1 9.3904 1.9822 3.3784 36 1 8.1806 3.2879 3.3454 37 1 10.9390 3.2589 4.4910 38 1 9.9661 4.7486 4.5383 39 1 11.4673 4.6189 6.1790 40 1 8.7643 5.4489 2.5039 41 1 10.4117 5.7630 1.9060 42 1 10.0312 4.3250 -0.0375 43 1 8.7032 5.5112 0.0610 44 1 7.6583 0.9784 0.0033 45 1 6.0927 -0.9164 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:55 Heat of formation + Delta-G solvation = 14.149389 kcal Electronic energy + Delta-G solvation = -26028.113877 eV Core-core repulsion = 22365.026577 eV Total energy + Delta-G solvation = -3663.087299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02961 -39.46510 -37.69806 -34.86546 -33.45960 -33.06718 -32.51213 -31.77658 -30.75649 -28.30926 -25.71220 -24.89194 -24.55678 -23.56006 -23.01317 -22.29041 -21.11933 -19.57261 -18.10070 -17.25969 -16.88697 -16.44635 -16.31344 -15.89823 -15.44846 -15.30687 -15.23402 -14.79304 -14.58237 -14.29751 -14.21945 -13.91121 -13.71770 -13.66190 -13.14345 -12.86089 -12.80331 -12.43744 -11.93724 -11.90706 -11.77914 -11.40855 -11.31105 -11.25341 -10.84809 -10.74774 -10.69174 -10.48605 -10.40957 -10.26036 -10.13897 -10.10857 -9.72487 -8.91416 -8.58720 -8.44640 -7.92946 -7.52121 -6.44223 -4.14222 0.38567 0.61850 1.03945 1.87003 2.55732 2.81023 3.35285 3.40763 3.43674 3.59544 4.04558 4.16537 4.43177 4.52078 4.53451 4.54684 4.60162 4.64620 4.73776 4.96851 5.04716 5.16523 5.23108 5.27768 5.32599 5.33974 5.34852 5.35787 5.48175 5.61199 5.62364 5.65942 5.78132 5.81959 6.00062 6.06352 6.20851 6.36041 6.52750 6.87167 6.95365 7.26228 7.28978 7.62709 7.79687 7.95162 8.19198 8.48211 8.78208 9.56699 10.94853 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.002157 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.723317 B =12977.449352 C =13246.586407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 S -0.073 6.073 4 C 0.117 3.883 5 C -0.097 4.097 6 C -0.061 4.061 7 C 0.557 3.443 8 O -0.533 6.533 9 N -0.597 5.597 10 C 0.098 3.902 11 C 0.037 3.963 12 N -0.529 5.529 13 C 0.183 3.817 14 C -0.591 4.591 15 H 0.059 0.941 16 C 0.015 3.985 17 N -0.912 5.912 18 Si 1.075 2.925 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.285 1.285 22 C 0.051 3.949 23 C 0.115 3.885 24 C -0.155 4.155 25 C 0.113 3.887 26 N -0.480 5.480 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.022 0.978 38 H -0.019 1.019 39 H 0.267 0.733 40 H 0.025 0.975 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.153 0.847 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.864 -12.304 -13.034 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.247 4.247 3 S 0.167 5.833 4 C -0.131 4.131 5 C -0.124 4.124 6 C -0.074 4.074 7 C 0.344 3.656 8 O -0.410 6.410 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.092 4.092 12 N -0.253 5.253 13 C 0.058 3.942 14 C -0.629 4.629 15 H 0.077 0.923 16 C -0.189 4.189 17 N -0.549 5.549 18 Si 0.903 3.097 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.078 4.078 23 C -0.006 4.006 24 C -0.178 4.178 25 C -0.047 4.047 26 N -0.193 5.193 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.040 0.960 38 H -0.001 1.001 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.171 0.829 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.747 -10.934 -12.824 25.208 hybrid contribution -0.376 -1.019 -0.127 1.093 sum -19.123 -11.953 -12.950 26.005 Atomic orbital electron populations 1.21575 0.92085 1.03097 1.03180 1.23418 0.99358 0.95227 1.06736 1.85703 0.93632 1.12596 1.91369 1.22957 0.99110 0.91156 0.99923 1.21725 0.91909 0.99802 0.98938 1.20257 0.93816 0.94123 0.99164 1.18161 0.81146 0.86864 0.79459 1.90783 1.74499 1.30488 1.45236 1.48113 1.15875 1.20254 1.48661 1.22456 1.00648 0.87288 0.92110 1.22444 0.94125 0.97746 0.94912 1.62024 1.27863 1.11008 1.24444 1.19835 0.94389 0.95664 0.84309 1.21963 1.09966 1.35626 0.95385 0.92313 1.25874 1.02790 0.97720 0.92547 1.70771 1.25256 1.37058 1.21785 0.83445 0.74818 0.76090 0.75299 1.21383 1.21398 1.21080 1.22359 0.99306 0.93839 0.92288 1.21951 0.90774 0.89464 0.98439 1.22600 1.02521 0.92104 1.00580 1.22704 0.87734 0.99610 0.94644 1.67905 1.15410 1.22496 1.13498 0.91618 0.90569 0.91593 0.89003 0.88962 0.83361 0.90014 0.89006 0.89883 0.95457 0.95995 1.00138 0.92310 0.95653 0.88089 0.90375 0.88985 0.82947 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.92 37.16 0.37 -0.37 16 2 C -0.10 -0.72 5.92 37.16 0.22 -0.50 16 3 S -0.07 -0.70 21.91 -107.50 -2.36 -3.06 16 4 C 0.12 1.33 7.00 -16.96 -0.12 1.22 16 5 C -0.10 -1.20 9.44 -38.77 -0.37 -1.56 16 6 C -0.06 -0.76 5.38 -104.69 -0.56 -1.32 16 7 C 0.56 8.36 7.46 -12.19 -0.09 8.27 16 8 O -0.53 -9.59 16.30 5.35 0.09 -9.50 16 9 N -0.60 -8.70 3.01 -173.45 -0.52 -9.23 16 10 C 0.10 1.24 4.90 -3.60 -0.02 1.22 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.58 16 12 N -0.53 -10.69 4.62 -235.77 -1.09 -11.78 16 13 C 0.18 4.55 4.03 -4.98 -0.02 4.53 16 14 C -0.59 -16.13 8.41 -34.44 -0.29 -16.42 16 15 H 0.06 1.59 7.13 -52.49 -0.37 1.22 16 16 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 17 N -0.91 -27.24 13.65 55.43 0.76 -26.48 16 18 Si 1.08 24.77 29.90 -169.99 -5.08 19.68 16 19 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.05 0.96 5.46 -3.70 -0.02 0.94 16 23 C 0.12 1.82 6.61 -3.60 -0.02 1.79 16 24 C -0.15 -1.49 7.50 -39.01 -0.29 -1.78 16 25 C 0.11 1.00 11.16 -17.62 -0.20 0.80 16 26 N -0.48 -5.13 9.40 -12.15 -0.11 -5.25 16 27 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.15 1.82 8.03 -52.49 -0.42 1.40 16 33 H 0.08 0.94 7.99 -51.93 -0.41 0.53 16 34 H 0.09 0.96 4.52 -51.93 -0.23 0.73 16 35 H 0.08 1.28 7.99 -51.94 -0.41 0.86 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.02 0.57 7.84 -51.93 -0.41 0.16 16 38 H -0.02 -0.51 7.99 -51.93 -0.41 -0.92 16 39 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 2.05 6.67 -51.93 -0.35 1.71 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.45 7.04 -51.93 -0.37 1.08 16 44 H 0.15 1.19 5.83 -52.49 -0.31 0.89 16 45 H 0.17 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 375.81 15.07 5.66 5.66 Total: -1.00 -32.60 375.81 -10.78 -43.38 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.59 Total: -1.16 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.53 Total: -2.28 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.97 Total: -52.73 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.36 Total: -3.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.60 -10.78 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.528 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds