Wall clock time and date at job start Tue Mar 31 2020 18:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 117.00230 * 2 1 4 4 O 1.20829 * 119.99868 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00362 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47146 * 59.99760 * 5 3 2 7 7 N 1.46898 * 109.47447 * 180.02562 * 5 3 2 8 8 C 1.46903 * 110.99700 * 273.41958 * 7 5 3 9 9 C 1.53001 * 109.47197 * 185.16858 * 8 7 5 10 10 C 1.50704 * 115.54883 * 271.39930 * 9 8 7 11 11 H 1.07998 * 120.00420 * 115.58380 * 10 9 8 12 12 C 1.37882 * 120.00093 * 295.58713 * 10 9 8 13 13 N 1.31516 * 119.99758 * 354.96631 * 12 10 9 14 14 Si 1.86797 * 120.00232 * 174.96845 * 12 10 9 15 15 H 1.48500 * 109.46905 * 89.99526 * 14 12 10 16 16 H 1.48496 * 109.46936 * 209.99889 * 14 12 10 17 17 H 1.48506 * 109.46911 * 329.99906 * 14 12 10 18 18 C 1.52995 * 117.50220 * 125.69260 * 9 8 7 19 19 C 1.52995 * 117.49936 * 57.06757 * 9 8 7 20 20 C 1.50701 * 109.46996 * 299.99813 * 5 3 2 21 21 C 1.38253 * 119.92719 * 284.77539 * 20 5 3 22 22 C 1.38250 * 120.14128 * 179.72664 * 21 20 5 23 23 C 1.38564 * 120.00221 * 0.54457 * 22 21 20 24 24 O 1.35990 * 120.07085 * 179.75119 * 23 22 21 25 25 C 1.42897 * 117.00248 * 359.97438 * 24 23 22 26 26 C 1.39154 * 119.85124 * 359.72790 * 23 22 21 27 27 O 1.36000 * 120.06879 * 180.02562 * 26 23 22 28 28 C 1.38243 * 119.92661 * 105.04761 * 20 5 3 29 29 H 1.08999 * 109.46465 * 60.00502 * 1 2 3 30 30 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46961 * 300.00654 * 1 2 3 32 32 H 1.00895 * 111.00451 * 37.36902 * 7 5 3 33 33 H 1.09004 * 109.47369 * 65.16933 * 8 7 5 34 34 H 1.09004 * 109.47324 * 305.16466 * 8 7 5 35 35 H 0.96994 * 120.00021 * 185.03113 * 13 12 10 36 36 H 1.09002 * 117.49913 * 359.97438 * 18 9 8 37 37 H 1.08999 * 117.50065 * 145.02459 * 18 9 8 38 38 H 1.09008 * 117.49635 * 214.98014 * 19 9 8 39 39 H 1.09000 * 117.49913 * 359.97438 * 19 9 8 40 40 H 1.07991 * 119.92458 * 359.97438 * 21 20 5 41 41 H 1.08007 * 119.99253 * 180.27372 * 22 21 20 42 42 H 1.09003 * 109.47434 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47402 * 300.00270 * 25 24 23 44 44 H 1.09005 * 109.47325 * 60.00272 * 25 24 23 45 45 H 0.96695 * 113.99518 * 269.97757 * 27 26 23 46 46 H 1.08001 * 120.00145 * 0.02562 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9829 2.6835 0.0011 8 6 4.0543 3.2118 -1.3678 9 6 4.6130 4.6358 -1.3364 10 6 3.5920 5.7310 -1.1659 11 1 3.6049 6.3482 -0.2797 12 6 2.6411 5.9452 -2.1412 13 7 2.6849 5.2612 -3.2636 14 14 1.2908 7.2067 -1.8683 15 1 1.7421 8.5306 -2.3674 16 1 0.0691 6.7908 -2.6029 17 1 0.9879 7.3016 -0.4176 18 6 5.8320 4.9359 -2.2109 19 6 5.9849 4.8423 -0.6915 20 6 4.1047 0.5920 1.2314 21 6 4.0132 1.2156 2.4619 22 6 4.5005 0.5908 3.5948 23 6 5.0923 -0.6583 3.4969 24 8 5.5767 -1.2720 4.6096 25 6 5.4425 -0.5709 5.8475 26 6 5.1894 -1.2835 2.2575 27 8 5.7689 -2.5097 2.1563 28 6 4.6939 -0.6542 1.1268 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3674 3.2425 0.5727 33 1 3.0560 3.2228 -1.8056 34 1 4.7074 2.5785 -1.9682 35 1 2.0613 5.4623 -3.9788 36 1 6.2363 4.1187 -2.8084 37 1 5.8957 5.9256 -2.6632 38 1 6.1491 5.7706 -0.1441 39 1 6.4893 3.9638 -0.2891 40 1 3.5566 2.1912 2.5388 41 1 4.4239 1.0783 4.5555 42 1 5.8688 -1.1698 6.6524 43 1 5.9698 0.3810 5.7851 44 1 4.3869 -0.3889 6.0495 45 1 6.7220 -2.4821 1.9956 46 1 4.7685 -1.1371 0.1637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:46 Heat of formation + Delta-G solvation = -103.806638 kcal Electronic energy + Delta-G solvation = -29598.852406 eV Core-core repulsion = 25455.604528 eV Total energy + Delta-G solvation = -4143.247879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.74586 -40.11884 -38.03100 -37.36211 -36.58979 -36.18367 -34.10688 -31.95148 -30.78516 -29.93132 -28.33436 -27.46824 -26.16849 -25.35603 -23.70115 -22.57375 -22.03801 -21.01166 -20.26721 -19.11129 -18.60415 -17.75477 -17.39116 -16.73166 -16.53934 -16.27753 -15.91950 -15.87542 -15.13551 -14.70771 -14.61238 -14.38944 -14.08032 -13.95309 -13.74005 -13.40278 -13.12014 -12.92060 -12.46928 -12.36672 -12.20322 -11.96290 -11.71257 -11.52476 -11.40475 -11.27060 -11.14418 -10.92333 -10.86024 -10.64787 -10.61468 -10.42545 -10.29520 -10.11325 -9.36925 -8.88063 -8.80104 -8.48010 -8.19530 -8.05545 -7.81098 -6.00143 -4.04641 1.21020 1.25714 2.43481 2.91657 3.09544 3.31698 3.38915 3.42846 3.54973 4.13789 4.43983 4.59051 4.70699 4.84615 4.88166 4.95255 5.08549 5.13105 5.20438 5.24487 5.26043 5.27404 5.33533 5.38770 5.53527 5.59460 5.61695 5.85034 6.07908 6.13425 6.22681 6.46879 6.50104 6.54539 6.59496 6.61168 6.82359 6.88602 6.89296 7.08753 7.15438 7.49497 7.54844 7.67150 7.69358 7.89594 7.95225 8.04968 8.50255 8.95819 9.60122 11.07848 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.003475 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.162504 B = 8055.205942 C = 8849.455148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.431 3.569 4 O -0.487 6.487 5 C 0.140 3.860 6 H 0.117 0.883 7 N -0.647 5.647 8 C 0.098 3.902 9 C 0.055 3.945 10 C -0.493 4.493 11 H 0.058 0.942 12 C 0.073 3.927 13 N -0.880 5.880 14 Si 0.888 3.112 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.177 4.177 19 C -0.193 4.193 20 C -0.080 4.080 21 C -0.058 4.058 22 C -0.195 4.195 23 C 0.101 3.899 24 O -0.311 6.311 25 C 0.025 3.975 26 C 0.070 3.930 27 O -0.487 6.487 28 C -0.086 4.086 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.356 0.644 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.259 0.741 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.384 0.616 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -14.500 12.289 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.270 3.730 4 O -0.372 6.372 5 C 0.027 3.973 6 H 0.135 0.865 7 N -0.279 5.279 8 C -0.029 4.029 9 C 0.054 3.946 10 C -0.530 4.530 11 H 0.076 0.924 12 C -0.130 4.130 13 N -0.517 5.517 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.216 4.216 19 C -0.230 4.230 20 C -0.082 4.082 21 C -0.076 4.076 22 C -0.214 4.214 23 C 0.055 3.945 24 O -0.224 6.224 25 C -0.070 4.070 26 C 0.025 3.975 27 O -0.296 6.296 28 C -0.105 4.105 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.178 0.822 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.239 0.761 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.917 -14.780 12.277 19.434 hybrid contribution -1.535 1.336 -0.230 2.047 sum 1.382 -13.444 12.047 18.105 Atomic orbital electron populations 1.23208 0.77261 1.03143 1.02443 1.86559 1.22810 1.34015 1.84164 1.25346 0.93500 0.81608 0.72564 1.90758 1.66443 1.36069 1.43960 1.20327 0.84498 0.94586 0.97888 0.86483 1.61067 1.52952 0.98389 1.15531 1.21669 1.00802 0.95043 0.85433 1.18690 0.86137 0.91923 0.97878 1.20517 1.11860 1.15532 1.05140 0.92353 1.24943 0.97115 0.95695 0.95247 1.69953 1.37388 1.39747 1.04581 0.86648 0.81878 0.81406 0.78451 1.20816 1.21323 1.19778 1.22743 1.06729 1.00481 0.91626 1.22734 1.04591 1.00400 0.95280 1.19150 1.01219 0.94055 0.93743 1.20837 0.96676 0.99181 0.90953 1.21106 1.04960 0.95215 1.00073 1.19446 0.96303 0.91840 0.86882 1.86120 1.76713 1.45182 1.14377 1.23071 1.01799 0.97959 0.84151 1.17558 1.03501 0.86937 0.89483 1.84893 1.26324 1.24112 1.94242 1.21058 0.97811 0.93661 0.97938 0.91999 0.88521 0.92206 0.82196 0.92427 0.93858 0.93129 0.92088 0.90578 0.91149 0.90913 0.85151 0.85034 0.88360 0.92538 0.92666 0.76130 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.48 10.48 -39.25 -0.41 -5.89 16 3 C 0.43 7.48 7.11 36.00 0.26 7.73 16 4 O -0.49 -10.15 15.16 -18.75 -0.28 -10.44 16 5 C 0.14 2.24 2.71 -70.02 -0.19 2.05 16 6 H 0.12 1.74 7.50 -51.93 -0.39 1.35 16 7 N -0.65 -12.13 5.44 -109.19 -0.59 -12.73 16 8 C 0.10 2.19 5.25 -3.82 -0.02 2.17 16 9 C 0.05 1.32 1.55 -155.66 -0.24 1.08 16 10 C -0.49 -13.36 8.83 -34.44 -0.30 -13.67 16 11 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 12 C 0.07 2.01 5.23 -17.82 -0.09 1.92 16 13 N -0.88 -24.95 12.45 55.43 0.69 -24.26 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.18 -4.11 9.88 -26.73 -0.26 -4.37 16 19 C -0.19 -4.17 9.77 -26.73 -0.26 -4.43 16 20 C -0.08 -1.13 4.87 -104.61 -0.51 -1.64 16 21 C -0.06 -0.79 9.27 -39.57 -0.37 -1.15 16 22 C -0.19 -2.34 9.04 -39.46 -0.36 -2.69 16 23 C 0.10 1.27 6.70 -39.12 -0.26 1.01 16 24 O -0.31 -3.61 10.28 -34.21 -0.35 -3.97 16 25 C 0.03 0.19 9.81 101.05 0.99 1.18 16 26 C 0.07 0.90 6.72 -39.12 -0.26 0.63 16 27 O -0.49 -5.61 13.29 -34.24 -0.46 -6.07 16 28 C -0.09 -1.09 9.60 -39.46 -0.38 -1.47 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.36 7.21 7.23 -39.29 -0.28 6.93 16 33 H 0.06 1.48 6.84 -51.93 -0.36 1.13 16 34 H 0.04 0.92 7.67 -51.93 -0.40 0.52 16 35 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 36 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.13 1.79 7.45 -52.49 -0.39 1.40 16 41 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 44 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 45 H 0.38 2.69 9.06 45.56 0.41 3.10 16 46 H 0.14 1.52 8.00 -52.49 -0.42 1.10 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -32.55 391.38 -7.60 -40.15 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.87 Total: 10.89 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.20 Total: -10.17 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.10 Total: -36.99 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.50 Total: -26.37 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.55 -7.60 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.653 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds