Wall clock time and date at job start Tue Mar 31 2020 18:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 117.00230 * 2 1 4 4 O 1.20829 * 119.99868 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00362 * 179.97438 * 3 2 1 6 6 H 1.08995 * 109.47146 * 59.99760 * 5 3 2 7 7 N 1.46898 * 109.47447 * 180.02562 * 5 3 2 8 8 C 1.46903 * 110.99700 * 273.41958 * 7 5 3 9 9 C 1.53001 * 109.47197 * 185.16858 * 8 7 5 10 10 C 1.50704 * 115.54883 * 271.39930 * 9 8 7 11 11 H 1.07998 * 120.00420 * 115.58380 * 10 9 8 12 12 C 1.37882 * 120.00093 * 295.58713 * 10 9 8 13 13 N 1.31516 * 119.99758 * 354.96631 * 12 10 9 14 14 Si 1.86797 * 120.00232 * 174.96845 * 12 10 9 15 15 H 1.48500 * 109.46905 * 89.99526 * 14 12 10 16 16 H 1.48496 * 109.46936 * 209.99889 * 14 12 10 17 17 H 1.48506 * 109.46911 * 329.99906 * 14 12 10 18 18 C 1.52995 * 117.50220 * 125.69260 * 9 8 7 19 19 C 1.52995 * 117.49936 * 57.06757 * 9 8 7 20 20 C 1.50701 * 109.46996 * 299.99813 * 5 3 2 21 21 C 1.38253 * 119.92719 * 284.77539 * 20 5 3 22 22 C 1.38250 * 120.14128 * 179.72664 * 21 20 5 23 23 C 1.38564 * 120.00221 * 0.54457 * 22 21 20 24 24 O 1.35990 * 120.07085 * 179.75119 * 23 22 21 25 25 C 1.42897 * 117.00248 * 359.97438 * 24 23 22 26 26 C 1.39154 * 119.85124 * 359.72790 * 23 22 21 27 27 O 1.36000 * 120.06879 * 180.02562 * 26 23 22 28 28 C 1.38243 * 119.92661 * 105.04761 * 20 5 3 29 29 H 1.08999 * 109.46465 * 60.00502 * 1 2 3 30 30 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46961 * 300.00654 * 1 2 3 32 32 H 1.00895 * 111.00451 * 37.36902 * 7 5 3 33 33 H 1.09004 * 109.47369 * 65.16933 * 8 7 5 34 34 H 1.09004 * 109.47324 * 305.16466 * 8 7 5 35 35 H 0.96994 * 120.00021 * 185.03113 * 13 12 10 36 36 H 1.09002 * 117.49913 * 359.97438 * 18 9 8 37 37 H 1.08999 * 117.50065 * 145.02459 * 18 9 8 38 38 H 1.09008 * 117.49635 * 214.98014 * 19 9 8 39 39 H 1.09000 * 117.49913 * 359.97438 * 19 9 8 40 40 H 1.07991 * 119.92458 * 359.97438 * 21 20 5 41 41 H 1.08007 * 119.99253 * 180.27372 * 22 21 20 42 42 H 1.09003 * 109.47434 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47402 * 300.00270 * 25 24 23 44 44 H 1.09005 * 109.47325 * 60.00272 * 25 24 23 45 45 H 0.96695 * 113.99518 * 269.97757 * 27 26 23 46 46 H 1.08001 * 120.00145 * 0.02562 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9565 0.7805 -0.8891 7 7 3.9829 2.6835 0.0011 8 6 4.0543 3.2118 -1.3678 9 6 4.6130 4.6358 -1.3364 10 6 3.5920 5.7310 -1.1659 11 1 3.6049 6.3482 -0.2797 12 6 2.6411 5.9452 -2.1412 13 7 2.6849 5.2612 -3.2636 14 14 1.2908 7.2067 -1.8683 15 1 1.7421 8.5306 -2.3674 16 1 0.0691 6.7908 -2.6029 17 1 0.9879 7.3016 -0.4176 18 6 5.8320 4.9359 -2.2109 19 6 5.9849 4.8423 -0.6915 20 6 4.1047 0.5920 1.2314 21 6 4.0132 1.2156 2.4619 22 6 4.5005 0.5908 3.5948 23 6 5.0923 -0.6583 3.4969 24 8 5.5767 -1.2720 4.6096 25 6 5.4425 -0.5709 5.8475 26 6 5.1894 -1.2835 2.2575 27 8 5.7689 -2.5097 2.1563 28 6 4.6939 -0.6542 1.1268 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.3674 3.2425 0.5727 33 1 3.0560 3.2228 -1.8056 34 1 4.7074 2.5785 -1.9682 35 1 2.0613 5.4623 -3.9788 36 1 6.2363 4.1187 -2.8084 37 1 5.8957 5.9256 -2.6632 38 1 6.1491 5.7706 -0.1441 39 1 6.4893 3.9638 -0.2891 40 1 3.5566 2.1912 2.5388 41 1 4.4239 1.0783 4.5555 42 1 5.8688 -1.1698 6.6524 43 1 5.9698 0.3810 5.7851 44 1 4.3869 -0.3889 6.0495 45 1 6.7220 -2.4821 1.9956 46 1 4.7685 -1.1371 0.1637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602809292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:45 Heat of formation + Delta-G solvation = -125.249129 kcal Electronic energy + Delta-G solvation = -29599.782223 eV Core-core repulsion = 25455.604528 eV Total energy + Delta-G solvation = -4144.177695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93640 -41.17645 -39.09751 -38.66192 -37.86319 -37.52632 -35.50436 -34.02461 -31.92432 -30.91753 -29.36552 -28.37962 -27.72425 -26.96844 -25.21476 -23.58914 -23.07857 -22.79999 -21.50469 -20.96810 -19.55139 -18.90765 -18.49518 -18.13175 -17.91183 -17.51967 -17.28866 -16.73750 -16.63532 -16.27905 -15.67450 -15.64818 -15.43346 -15.11041 -14.89176 -14.73161 -14.57418 -14.25274 -13.83962 -13.41662 -13.36883 -13.30289 -13.00697 -12.96175 -12.90603 -12.82077 -12.67429 -12.37382 -12.20540 -12.10141 -11.92720 -11.84342 -11.65935 -11.52583 -11.22257 -10.78221 -10.43276 -10.01097 -9.81472 -9.46200 -9.04707 -8.09632 -6.18070 0.24904 0.27542 1.08210 1.36373 1.39831 1.47713 1.71814 2.33101 2.41664 2.55551 3.12363 3.19154 3.30340 3.64792 3.75019 3.79359 3.93046 4.04238 4.18222 4.25654 4.26234 4.34765 4.37965 4.42342 4.45643 4.62251 4.63752 4.68337 4.76241 4.77037 4.91415 5.00693 5.03985 5.11602 5.13545 5.24352 5.27974 5.33089 5.52413 5.65620 5.66443 5.70710 5.86100 6.05611 6.30181 6.31402 6.46589 6.66119 6.88636 6.93018 7.48386 8.97375 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012929 B = 0.003475 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.162504 B = 8055.205942 C = 8849.455148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.434 3.566 4 O -0.530 6.530 5 C 0.143 3.857 6 H 0.130 0.870 7 N -0.637 5.637 8 C 0.116 3.884 9 C 0.027 3.973 10 C -0.504 4.504 11 H 0.049 0.951 12 C 0.030 3.970 13 N -0.904 5.904 14 Si 0.940 3.060 15 H -0.274 1.274 16 H -0.290 1.290 17 H -0.272 1.272 18 C -0.181 4.181 19 C -0.165 4.165 20 C -0.091 4.091 21 C -0.070 4.070 22 C -0.191 4.191 23 C 0.098 3.902 24 O -0.324 6.324 25 C 0.015 3.985 26 C 0.067 3.933 27 O -0.495 6.495 28 C -0.085 4.085 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.059 0.941 32 H 0.346 0.654 33 H 0.016 0.984 34 H 0.053 0.947 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.153 0.847 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.404 0.596 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -15.968 13.819 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.276 3.724 4 O -0.418 6.418 5 C 0.030 3.970 6 H 0.147 0.853 7 N -0.268 5.268 8 C -0.013 4.013 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.542 5.542 14 Si 0.766 3.234 15 H -0.199 1.199 16 H -0.216 1.216 17 H -0.197 1.197 18 C -0.220 4.220 19 C -0.202 4.202 20 C -0.092 4.092 21 C -0.089 4.089 22 C -0.209 4.209 23 C 0.052 3.948 24 O -0.238 6.238 25 C -0.079 4.079 26 C 0.022 3.978 27 O -0.307 6.307 28 C -0.103 4.103 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.078 0.922 32 H 0.167 0.833 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.171 0.829 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.262 0.738 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.715 -16.273 13.824 21.672 hybrid contribution -1.755 1.676 -0.599 2.499 sum 1.960 -14.597 13.224 19.794 Atomic orbital electron populations 1.23515 0.75538 1.05614 1.02010 1.86540 1.24479 1.32671 1.83482 1.25549 0.94032 0.81515 0.71306 1.90741 1.67440 1.37491 1.46176 1.20374 0.83877 0.93048 0.99695 0.85260 1.61019 1.52931 0.99644 1.13170 1.21305 0.98401 0.94471 0.87106 1.18783 0.86591 0.92226 0.99813 1.20790 1.12756 1.16114 1.04574 0.93322 1.25549 0.98881 0.97432 0.95216 1.70049 1.38108 1.40944 1.05108 0.85832 0.79522 0.79825 0.78186 1.19944 1.21564 1.19671 1.22699 1.06456 0.99997 0.92810 1.22699 1.02294 1.01146 0.94060 1.18959 1.02594 0.94779 0.92838 1.20861 0.97368 0.99146 0.91511 1.21263 1.04124 0.95088 1.00456 1.19591 0.95943 0.91880 0.87401 1.86109 1.76489 1.45988 1.15170 1.23375 1.02726 0.98732 0.83043 1.17650 1.03461 0.87142 0.89594 1.84836 1.28097 1.23544 1.94232 1.21150 0.97258 0.93109 0.98820 0.92948 0.84569 0.92223 0.83322 0.96537 0.92863 0.93392 0.90727 0.92372 0.91130 0.88810 0.85997 0.82896 0.86158 0.91623 0.91944 0.73842 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.56 113.37 1.20 1.83 16 2 O -0.36 -10.62 10.48 -51.38 -0.54 -11.16 16 3 C 0.43 15.21 7.11 71.23 0.51 15.71 16 4 O -0.53 -22.78 15.16 21.95 0.33 -22.45 16 5 C 0.14 4.51 2.71 43.42 0.12 4.62 16 6 H 0.13 3.73 7.50 -2.39 -0.02 3.71 16 7 N -0.64 -23.92 5.44 -499.36 -2.72 -26.64 16 8 C 0.12 5.21 5.25 86.30 0.45 5.66 16 9 C 0.03 1.29 1.55 -52.93 -0.08 1.21 16 10 C -0.50 -27.81 8.83 25.60 0.23 -27.58 16 11 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 12 C 0.03 1.65 5.23 84.66 0.44 2.10 16 13 N -0.90 -52.39 12.45 21.45 0.27 -52.12 16 14 Si 0.94 45.05 29.54 68.60 2.03 47.07 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 18 C -0.18 -8.33 9.88 30.59 0.30 -8.03 16 19 C -0.16 -6.93 9.77 30.59 0.30 -6.64 16 20 C -0.09 -2.45 4.87 -19.86 -0.10 -2.54 16 21 C -0.07 -1.84 9.27 22.28 0.21 -1.64 16 22 C -0.19 -4.23 9.04 22.35 0.20 -4.03 16 23 C 0.10 2.26 6.70 22.57 0.15 2.41 16 24 O -0.32 -6.76 10.28 -79.57 -0.82 -7.58 16 25 C 0.02 0.19 9.81 113.37 1.11 1.31 16 26 C 0.07 1.56 6.72 22.57 0.15 1.72 16 27 O -0.50 -10.27 13.29 -79.69 -1.06 -11.33 16 28 C -0.08 -2.00 9.60 22.35 0.21 -1.78 16 29 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.35 14.35 7.23 -89.70 -0.65 13.70 16 33 H 0.02 0.87 6.84 -2.38 -0.02 0.85 16 34 H 0.05 2.24 7.67 -2.38 -0.02 2.22 16 35 H 0.26 14.39 8.32 -92.71 -0.77 13.61 16 36 H 0.07 3.18 8.04 -2.39 -0.02 3.16 16 37 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 40 H 0.12 3.35 7.45 -2.92 -0.02 3.33 16 41 H 0.15 2.60 6.30 -2.91 -0.02 2.59 16 42 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 44 H 0.06 0.70 7.66 -2.38 -0.02 0.68 16 45 H 0.40 4.66 9.06 -74.06 -0.67 3.99 16 46 H 0.15 3.03 8.00 -2.91 -0.02 3.01 16 Total: -1.00 -70.47 391.38 2.60 -67.87 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: -0.30 Total: 31.99 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.40 Total: -15.67 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.45 Total: -78.76 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -2.08 Total: -52.51 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.47 2.60 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.376 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds