Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00180 * 2 1 4 4 O 1.20829 * 119.99830 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00238 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.47141 * 300.00127 * 5 3 2 7 7 N 1.46896 * 109.47088 * 180.02562 * 5 3 2 8 8 C 1.46901 * 111.00315 * 85.87610 * 7 5 3 9 9 C 1.53003 * 109.47249 * 185.23951 * 8 7 5 10 10 C 1.50695 * 115.54760 * 281.41074 * 9 8 7 11 11 H 1.08002 * 119.99970 * 146.91118 * 10 9 8 12 12 C 1.37876 * 120.00203 * 326.90662 * 10 9 8 13 13 N 1.31520 * 119.99810 * 164.22948 * 12 10 9 14 14 Si 1.86798 * 120.00310 * 344.22548 * 12 10 9 15 15 H 1.48501 * 109.46798 * 95.70997 * 14 12 10 16 16 H 1.48494 * 109.47385 * 215.71183 * 14 12 10 17 17 H 1.48497 * 109.46890 * 335.71502 * 14 12 10 18 18 C 1.52999 * 117.49687 * 135.70341 * 9 8 7 19 19 C 1.52997 * 59.99963 * 252.51173 * 18 9 8 20 20 C 1.50693 * 109.47080 * 60.00323 * 5 3 2 21 21 C 1.38254 * 119.92483 * 73.73484 * 20 5 3 22 22 C 1.38249 * 120.14643 * 180.02562 * 21 20 5 23 23 C 1.38568 * 119.99750 * 0.02562 * 22 21 20 24 24 O 1.35994 * 120.06927 * 180.02562 * 23 22 21 25 25 C 1.42902 * 117.00103 * 0.02562 * 24 23 22 26 26 C 1.39149 * 119.85528 * 0.27523 * 23 22 21 27 27 O 1.35988 * 120.07244 * 179.72378 * 26 23 22 28 28 C 1.38243 * 119.92903 * 253.75776 * 20 5 3 29 29 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46574 * 299.99347 * 1 2 3 31 31 H 1.08991 * 109.47495 * 59.99493 * 1 2 3 32 32 H 1.00904 * 110.99847 * 209.83143 * 7 5 3 33 33 H 1.09004 * 109.47231 * 305.24260 * 8 7 5 34 34 H 1.08999 * 109.47100 * 65.23702 * 8 7 5 35 35 H 0.96998 * 119.99638 * 180.02562 * 13 12 10 36 36 H 1.08997 * 117.49989 * 0.02562 * 18 9 8 37 37 H 1.09000 * 117.49714 * 145.01799 * 18 9 8 38 38 H 1.09004 * 117.49881 * 252.51191 * 19 18 9 39 39 H 1.09000 * 117.52006 * 107.48482 * 19 18 9 40 40 H 1.07999 * 119.92699 * 0.04630 * 21 20 5 41 41 H 1.07998 * 119.99728 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47002 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.46986 * 299.99547 * 25 24 23 44 44 H 1.08992 * 109.47418 * 60.00045 * 25 24 23 45 45 H 0.96699 * 114.00521 * 90.00429 * 27 26 23 46 46 H 1.07994 * 120.00036 * 359.97438 * 28 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7805 0.8892 7 7 3.9828 2.6835 0.0002 8 6 4.0381 3.2155 1.3683 9 6 4.3468 4.7133 1.3211 10 6 5.7910 5.0721 1.0836 11 1 6.0416 5.9630 0.5269 12 6 6.7925 4.2630 1.5770 13 7 8.0208 4.3863 1.1235 14 14 6.4047 2.9919 2.8897 15 1 6.1640 1.6748 2.2474 16 1 7.5510 2.8832 3.8275 17 1 5.1909 3.4071 3.6376 18 6 3.5309 5.6318 2.2331 19 6 3.2822 5.6355 0.7234 20 6 4.1046 0.5921 -1.2314 21 6 3.9855 1.2021 -2.4663 22 6 4.4773 0.5796 -3.5985 23 6 5.0907 -0.6588 -3.4972 24 8 5.5754 -1.2722 -4.6099 25 6 5.4186 -0.5823 -5.8515 26 6 5.2049 -1.2756 -2.2551 27 8 5.8011 -2.4935 -2.1513 28 6 4.7160 -0.6431 -1.1232 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 4.8688 2.7989 -0.4688 33 1 3.0774 3.0578 1.8586 34 1 4.8198 2.7009 1.9270 35 1 8.7253 3.8169 1.4704 36 1 2.7746 5.1690 2.8670 37 1 4.0389 6.4958 2.6616 38 1 3.6265 6.5019 0.1587 39 1 2.3621 5.1751 0.3635 40 1 3.5076 2.1673 -2.5467 41 1 4.3826 1.0581 -4.5621 42 1 5.8469 -1.1802 -6.6560 43 1 4.3584 -0.4194 -6.0452 44 1 5.9305 0.3786 -5.8004 45 1 6.7549 -2.4527 -1.9979 46 1 4.8078 -1.1175 -0.1574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602809294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = -84.239933 kcal Electronic energy + Delta-G solvation = -29988.378465 eV Core-core repulsion = 25845.979062 eV Total energy + Delta-G solvation = -4142.399403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.76098 -40.10984 -38.13026 -37.55953 -36.75009 -36.18384 -34.29503 -32.24395 -30.87798 -30.00568 -28.45079 -27.55974 -26.60056 -25.46798 -23.96169 -22.67952 -22.06825 -21.22295 -20.32805 -19.12704 -18.66824 -17.83004 -17.37325 -16.80363 -16.55917 -16.29809 -16.09737 -15.89389 -15.52411 -15.12113 -14.72172 -14.44886 -14.10316 -14.08842 -13.77733 -13.58331 -13.12625 -12.99394 -12.87877 -12.47264 -12.30828 -12.20116 -12.01333 -11.93565 -11.57343 -11.36595 -11.21206 -10.97667 -10.70347 -10.66147 -10.53459 -10.37373 -10.20119 -9.93860 -9.40882 -9.28796 -8.90246 -8.83159 -8.32887 -8.14901 -7.84360 -6.22188 -4.10775 1.17891 1.18877 2.42935 2.76036 3.08263 3.09103 3.31170 3.34865 3.49377 4.11453 4.28495 4.46959 4.64880 4.72096 4.85606 4.96644 4.98067 5.01333 5.10562 5.13315 5.16547 5.23906 5.31231 5.33119 5.49403 5.51129 5.52455 5.73655 5.79441 5.94734 6.02281 6.18935 6.20846 6.42280 6.43729 6.47940 6.56567 6.57983 6.71679 6.85623 7.01734 7.07480 7.30923 7.42790 7.66522 7.71062 7.85307 8.02226 8.49161 8.87038 9.43385 10.89866 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.004554 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.909825 B = 6147.182987 C = 7400.001926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.476 6.476 5 C 0.141 3.859 6 H 0.084 0.916 7 N -0.649 5.649 8 C 0.094 3.906 9 C 0.012 3.988 10 C -0.478 4.478 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.288 1.288 16 H -0.299 1.299 17 H -0.265 1.265 18 C -0.210 4.210 19 C -0.169 4.169 20 C -0.111 4.111 21 C -0.055 4.055 22 C -0.195 4.195 23 C 0.108 3.892 24 O -0.309 6.309 25 C 0.024 3.976 26 C 0.071 3.929 27 O -0.487 6.487 28 C -0.082 4.082 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.369 0.631 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.386 0.614 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -12.998 -8.754 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.359 6.359 5 C 0.029 3.971 6 H 0.101 0.899 7 N -0.285 5.285 8 C -0.034 4.034 9 C 0.011 3.989 10 C -0.515 4.515 11 H 0.096 0.904 12 C -0.130 4.130 13 N -0.522 5.522 14 Si 0.723 3.277 15 H -0.217 1.217 16 H -0.228 1.228 17 H -0.191 1.191 18 C -0.249 4.249 19 C -0.207 4.207 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.213 4.213 23 C 0.062 3.938 24 O -0.222 6.222 25 C -0.071 4.071 26 C 0.026 3.974 27 O -0.295 6.295 28 C -0.101 4.101 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.193 0.807 33 H 0.076 0.924 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.159 0.841 41 H 0.153 0.847 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.241 0.759 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.349 -12.892 -8.990 18.287 hybrid contribution 0.854 -0.638 1.080 1.518 sum -8.495 -13.530 -7.910 17.827 Atomic orbital electron populations 1.23189 0.76936 1.03228 1.02362 1.86520 1.22881 1.33886 1.84591 1.23724 0.91612 0.81291 0.72956 1.90657 1.66215 1.36059 1.43015 1.19765 0.87861 0.92517 0.96908 0.89880 1.60026 1.38144 1.11034 1.19275 1.21927 0.97964 0.96159 0.87302 1.19161 0.93085 0.86963 0.99692 1.20412 0.86189 1.10602 1.34337 0.90416 1.25006 0.95028 0.96938 0.95987 1.69957 1.01471 1.39842 1.40956 0.86821 0.77227 0.80911 0.82766 1.21674 1.22786 1.19057 1.23139 1.04384 1.04629 0.92734 1.22629 1.00811 1.02541 0.94695 1.19221 1.02707 0.95249 0.93981 1.20978 0.96155 0.99610 0.90585 1.21152 1.04575 0.95388 1.00235 1.19488 0.95641 0.91726 0.86904 1.86129 1.76054 1.45876 1.14182 1.23096 1.01795 0.98242 0.83929 1.17541 1.03302 0.87249 0.89356 1.84879 1.26008 1.24299 1.94361 1.21111 0.97414 0.93557 0.98062 0.88455 0.92127 0.92083 0.80726 0.92419 0.96154 0.92529 0.91739 0.89924 0.90509 0.90125 0.84072 0.84719 0.88267 0.92612 0.92351 0.75948 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.25 10.48 -39.25 -0.41 -5.67 16 3 C 0.46 7.78 7.01 36.00 0.25 8.03 16 4 O -0.48 -9.09 15.79 -18.75 -0.30 -9.38 16 5 C 0.14 2.36 2.72 -70.02 -0.19 2.17 16 6 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 7 N -0.65 -12.56 5.35 -109.19 -0.58 -13.15 16 8 C 0.09 2.03 4.29 -3.82 -0.02 2.01 16 9 C 0.01 0.29 1.49 -155.66 -0.23 0.06 16 10 C -0.48 -12.93 9.56 -34.44 -0.33 -13.26 16 11 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 12 C 0.07 2.00 5.40 -17.82 -0.10 1.90 16 13 N -0.89 -25.64 13.96 55.43 0.77 -24.86 16 14 Si 0.89 21.36 24.32 -169.99 -4.13 17.23 16 15 H -0.29 -6.54 6.87 56.52 0.39 -6.15 16 16 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.27 -6.27 6.81 56.52 0.38 -5.88 16 18 C -0.21 -4.59 9.88 -26.73 -0.26 -4.85 16 19 C -0.17 -3.66 9.94 -26.73 -0.27 -3.92 16 20 C -0.11 -1.66 4.58 -104.62 -0.48 -2.14 16 21 C -0.05 -0.78 9.06 -39.57 -0.36 -1.14 16 22 C -0.19 -2.47 9.04 -39.46 -0.36 -2.82 16 23 C 0.11 1.45 6.70 -39.12 -0.26 1.19 16 24 O -0.31 -3.81 10.28 -34.23 -0.35 -4.17 16 25 C 0.02 0.20 9.81 101.05 0.99 1.19 16 26 C 0.07 0.98 6.72 -39.12 -0.26 0.71 16 27 O -0.49 -6.10 13.29 -34.21 -0.45 -6.56 16 28 C -0.08 -1.15 9.60 -39.46 -0.38 -1.53 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.37 7.48 8.18 -39.29 -0.32 7.16 16 33 H 0.06 1.22 7.50 -51.93 -0.39 0.83 16 34 H 0.02 0.48 1.79 -51.93 -0.09 0.38 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.14 2.04 7.91 -52.49 -0.41 1.62 16 41 H 0.14 1.37 6.30 -52.49 -0.33 1.04 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 45 H 0.39 3.21 9.06 45.56 0.41 3.62 16 46 H 0.14 1.73 7.99 -52.49 -0.42 1.31 16 LS Contribution 383.73 15.07 5.78 5.78 Total: -1.00 -32.57 383.73 -6.57 -39.14 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.72 Total: 12.57 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -1.18 Total: -10.94 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.19 Total: -38.01 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.51 Total: -25.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.13 Total: 17.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.57 -6.57 -39.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602809294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.097 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds