Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00359 * 2 1 4 4 O 1.20819 * 119.99567 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00170 * 179.72368 * 3 2 1 6 6 H 1.08995 * 109.47380 * 327.63737 * 5 3 2 7 7 C 1.50702 * 109.47005 * 87.63705 * 5 3 2 8 8 C 1.38288 * 119.97451 * 74.06207 * 7 5 3 9 9 C 1.38243 * 120.11325 * 179.97438 * 8 7 5 10 10 C 1.38171 * 120.05394 * 0.05081 * 9 8 7 11 11 C 1.38708 * 119.94571 * 359.97438 * 10 9 8 12 12 O 1.35901 * 120.05774 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99653 * 359.97438 * 12 11 10 14 14 C 1.38124 * 119.97232 * 253.79118 * 7 5 3 15 15 N 1.46899 * 109.47205 * 207.63213 * 5 3 2 16 16 C 1.48532 * 110.99589 * 60.44184 * 15 5 3 17 17 C 1.54942 * 103.22542 * 159.71878 * 16 15 5 18 18 C 1.54592 * 102.92060 * 322.58451 * 17 16 15 19 19 O 1.42895 * 110.31015 * 263.03977 * 18 17 16 20 20 C 1.50701 * 110.31001 * 140.87442 * 18 17 16 21 21 H 1.08003 * 120.00075 * 244.29088 * 20 18 17 22 22 C 1.37875 * 119.99952 * 64.28041 * 20 18 17 23 23 N 1.31511 * 120.00180 * 0.02562 * 22 20 18 24 24 Si 1.86807 * 120.00075 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47004 * 90.00157 * 24 22 20 26 26 H 1.48495 * 109.47394 * 210.00050 * 24 22 20 27 27 H 1.48497 * 109.47198 * 330.00461 * 24 22 20 28 28 C 1.47905 * 110.99812 * 177.83367 * 15 5 3 29 29 H 1.08996 * 109.47186 * 59.99953 * 1 2 3 30 30 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46621 * 300.00251 * 1 2 3 32 32 H 1.07995 * 119.94228 * 359.97438 * 8 7 5 33 33 H 1.07996 * 119.97126 * 180.02562 * 9 8 7 34 34 H 1.08005 * 120.02688 * 179.97438 * 10 9 8 35 35 H 1.09005 * 109.47092 * 179.97438 * 13 12 11 36 36 H 1.09003 * 109.47167 * 300.00008 * 13 12 11 37 37 H 1.09002 * 109.47546 * 60.00199 * 13 12 11 38 38 H 1.08005 * 120.02521 * 359.97438 * 14 7 5 39 39 H 1.08997 * 110.67106 * 278.15108 * 16 15 5 40 40 H 1.09004 * 110.67028 * 41.28656 * 16 15 5 41 41 H 1.08999 * 110.72304 * 204.22925 * 17 16 15 42 42 H 1.09000 * 110.87319 * 81.01649 * 17 16 15 43 43 H 0.96702 * 114.00089 * 295.72000 * 19 18 17 44 44 H 0.97002 * 120.00216 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.92000 * 333.51341 * 28 15 5 46 46 H 1.09000 * 109.91545 * 94.80800 * 28 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0063 6 1 3.9722 0.4282 0.5599 7 6 4.0771 1.2395 -1.4111 8 6 3.9423 2.3515 -2.2220 9 6 4.4103 2.3224 -3.5225 10 6 5.0132 1.1812 -4.0156 11 6 5.1492 0.0642 -3.2044 12 8 5.7414 -1.0597 -3.6872 13 6 6.2004 -1.0211 -5.0400 14 6 4.6846 0.0983 -1.8974 15 7 3.9884 2.5271 0.6477 16 6 3.5109 2.5928 2.0527 17 6 4.4477 3.6456 2.6966 18 6 5.8091 3.3537 2.0249 19 8 6.6097 2.5223 2.8673 20 6 6.5301 4.6421 1.7225 21 1 6.7297 4.9217 0.6986 22 6 6.9345 5.4640 2.7529 23 7 6.6917 5.1234 3.9998 24 14 7.8275 7.0614 2.3781 25 1 6.8375 8.1574 2.2237 26 1 8.7536 7.3843 3.4931 27 1 8.6013 6.9124 1.1194 28 6 5.4631 2.6155 0.7185 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.4706 3.2442 -1.8387 33 1 4.3042 3.1923 -4.1536 34 1 5.3783 1.1588 -5.0318 35 1 6.6519 -1.9791 -5.2979 36 1 5.3583 -0.8253 -5.7039 37 1 6.9414 -0.2293 -5.1498 38 1 4.7939 -0.7683 -1.2622 39 1 2.4738 2.9258 2.0914 40 1 3.6241 1.6259 2.5431 41 1 4.5101 3.4981 3.7748 42 1 4.1125 4.6567 2.4657 43 1 6.8586 2.9352 3.7056 44 1 6.9766 5.7015 4.7248 45 1 5.8949 1.6148 0.7319 46 1 5.8430 3.1754 -0.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602852373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = -126.031813 kcal Electronic energy + Delta-G solvation = -30159.729005 eV Core-core repulsion = 26015.517370 eV Total energy + Delta-G solvation = -4144.211635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76942 -39.92627 -38.52427 -37.32478 -36.29886 -34.81597 -32.23716 -32.05337 -30.56228 -29.05006 -28.27855 -27.89852 -27.38717 -25.92217 -24.11540 -22.57979 -22.01567 -20.94121 -19.98711 -19.39356 -17.89358 -17.48243 -17.05843 -16.62683 -16.23729 -16.14982 -15.87605 -15.78973 -14.98257 -14.86524 -14.61219 -14.13818 -13.94119 -13.64141 -13.48566 -13.19305 -12.88748 -12.67045 -12.55226 -12.31440 -12.09310 -12.04224 -11.72161 -11.61009 -11.36240 -11.20067 -11.17276 -10.99158 -10.82425 -10.71917 -10.61227 -10.47286 -10.34823 -10.22112 -9.91501 -9.16655 -8.83690 -8.57136 -8.14540 -8.09210 -7.93986 -6.17969 -4.23619 1.24120 1.53844 2.34664 2.68972 3.19905 3.26399 3.33239 3.37284 3.78802 4.34370 4.45278 4.68264 4.77945 4.92155 4.98154 5.01208 5.06047 5.07181 5.11021 5.14159 5.26654 5.29869 5.46316 5.52396 5.53350 5.60851 5.69579 5.96036 6.00046 6.07299 6.20348 6.29342 6.35227 6.41060 6.48909 6.53272 6.69478 6.77238 6.92474 7.03305 7.22424 7.36758 7.42935 7.55617 7.62256 7.85296 7.93567 8.17011 8.77771 9.43059 9.54057 10.89918 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004122 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.729712 B = 6791.369370 C = 8472.310642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.479 6.479 5 C 0.128 3.872 6 H 0.080 0.920 7 C -0.043 4.043 8 C -0.111 4.111 9 C -0.086 4.086 10 C -0.202 4.202 11 C 0.118 3.882 12 O -0.318 6.318 13 C 0.029 3.971 14 C -0.131 4.131 15 N -0.488 5.488 16 C 0.025 3.975 17 C -0.115 4.115 18 C 0.245 3.755 19 O -0.594 6.594 20 C -0.526 4.526 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.061 3.939 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.384 0.616 44 H 0.267 0.733 45 H 0.040 0.960 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -11.328 -13.092 18.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.312 3.688 4 O -0.363 6.363 5 C 0.018 3.982 6 H 0.097 0.903 7 C -0.043 4.043 8 C -0.130 4.130 9 C -0.105 4.105 10 C -0.220 4.220 11 C 0.074 3.926 12 O -0.232 6.232 13 C -0.066 4.066 14 C -0.151 4.151 15 N -0.214 5.214 16 C -0.102 4.102 17 C -0.154 4.154 18 C 0.205 3.795 19 O -0.404 6.404 20 C -0.565 4.565 21 H 0.081 0.919 22 C -0.133 4.133 23 N -0.541 5.541 24 Si 0.728 3.272 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.066 4.066 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.236 0.764 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.755 -11.145 -13.624 19.234 hybrid contribution 0.666 0.831 0.574 1.210 sum -7.089 -10.315 -13.049 18.081 Atomic orbital electron populations 1.23222 0.76624 1.03403 1.02499 1.86514 1.23176 1.33710 1.84435 1.23409 0.91297 0.81398 0.72745 1.90653 1.66390 1.36056 1.43213 1.20213 0.87460 0.96018 0.94485 0.90274 1.19028 0.98332 0.93759 0.93216 1.21117 1.00164 0.98670 0.93041 1.20951 0.96760 0.97198 0.95545 1.21242 1.06247 0.94189 1.00370 1.18813 0.94749 0.85915 0.93153 1.86059 1.73103 1.34463 1.29576 1.23021 0.98992 1.03538 0.81097 1.20233 1.02204 0.98998 0.93618 1.64831 1.11424 1.27970 1.17183 1.23445 1.00183 0.99275 0.87302 1.22976 0.95950 0.97185 0.99267 1.19325 0.87411 0.87684 0.85119 1.86079 1.73196 1.46183 1.34983 1.21674 1.37142 1.04190 0.93465 0.91898 1.24996 0.95147 0.98174 0.94954 1.69612 1.47257 1.38602 0.98593 0.86460 0.79526 0.83194 0.78029 1.20536 1.21188 1.19800 1.22880 0.84193 0.99483 1.00037 0.92019 0.88291 0.91918 0.84305 0.85573 0.85649 0.88426 0.92839 0.92651 0.85010 0.90905 0.94680 0.91467 0.91103 0.76390 0.92344 0.94118 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.16 10.56 -39.26 -0.41 -5.58 16 3 C 0.47 7.83 6.30 36.00 0.23 8.06 16 4 O -0.48 -8.95 15.43 -18.74 -0.29 -9.24 16 5 C 0.13 2.18 1.86 -70.02 -0.13 2.05 16 6 H 0.08 1.29 7.79 -51.93 -0.40 0.89 16 7 C -0.04 -0.68 4.09 -104.64 -0.43 -1.10 16 8 C -0.11 -1.73 9.20 -39.56 -0.36 -2.09 16 9 C -0.09 -1.13 10.04 -39.60 -0.40 -1.53 16 10 C -0.20 -2.48 9.04 -39.43 -0.36 -2.83 16 11 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 12 O -0.32 -3.95 10.50 -19.43 -0.20 -4.16 16 13 C 0.03 0.23 9.81 101.05 0.99 1.22 16 14 C -0.13 -1.93 9.61 -39.43 -0.38 -2.31 16 15 N -0.49 -9.63 4.30 -225.28 -0.97 -10.60 16 16 C 0.03 0.51 5.69 -1.90 -0.01 0.50 16 17 C -0.12 -2.69 5.49 -24.87 -0.14 -2.83 16 18 C 0.24 6.07 0.99 -90.42 -0.09 5.98 16 19 O -0.59 -15.42 12.93 -35.23 -0.46 -15.88 16 20 C -0.53 -14.14 8.10 -34.44 -0.28 -14.42 16 21 H 0.06 1.69 7.34 -52.48 -0.39 1.31 16 22 C 0.07 1.82 5.26 -17.82 -0.09 1.73 16 23 N -0.90 -24.03 10.88 55.43 0.60 -23.43 16 24 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.06 1.33 5.33 -2.75 -0.01 1.31 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.14 2.32 7.90 -52.49 -0.41 1.91 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 37 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 38 H 0.13 1.79 7.99 -52.48 -0.42 1.37 16 39 H 0.07 1.45 7.30 -51.93 -0.38 1.07 16 40 H 0.03 0.68 7.99 -51.93 -0.42 0.27 16 41 H 0.07 1.62 8.05 -51.93 -0.42 1.20 16 42 H 0.07 1.77 7.86 -51.93 -0.41 1.36 16 43 H 0.38 10.15 7.05 45.56 0.32 10.47 16 44 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.04 0.88 7.52 -51.93 -0.39 0.49 16 46 H 0.08 1.88 7.39 -51.93 -0.38 1.50 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -30.20 378.25 -7.78 -37.98 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.07 Total: 12.84 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -0.66 Total: -3.47 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.37 Total: -34.03 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.36 Total: -34.85 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.20 -7.78 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.050 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds