Wall clock time and date at job start Tue Mar 31 2020 18:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00359 * 2 1 4 4 O 1.20819 * 119.99567 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00170 * 179.72368 * 3 2 1 6 6 H 1.08995 * 109.47380 * 327.63737 * 5 3 2 7 7 C 1.50702 * 109.47005 * 87.63705 * 5 3 2 8 8 C 1.38288 * 119.97451 * 74.06207 * 7 5 3 9 9 C 1.38243 * 120.11325 * 179.97438 * 8 7 5 10 10 C 1.38171 * 120.05394 * 0.05081 * 9 8 7 11 11 C 1.38708 * 119.94571 * 359.97438 * 10 9 8 12 12 O 1.35901 * 120.05774 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99653 * 359.97438 * 12 11 10 14 14 C 1.38124 * 119.97232 * 253.79118 * 7 5 3 15 15 N 1.46899 * 109.47205 * 207.63213 * 5 3 2 16 16 C 1.48532 * 110.99589 * 60.44184 * 15 5 3 17 17 C 1.54942 * 103.22542 * 159.71878 * 16 15 5 18 18 C 1.54592 * 102.92060 * 322.58451 * 17 16 15 19 19 O 1.42895 * 110.31015 * 263.03977 * 18 17 16 20 20 C 1.50701 * 110.31001 * 140.87442 * 18 17 16 21 21 H 1.08003 * 120.00075 * 244.29088 * 20 18 17 22 22 C 1.37875 * 119.99952 * 64.28041 * 20 18 17 23 23 N 1.31511 * 120.00180 * 0.02562 * 22 20 18 24 24 Si 1.86807 * 120.00075 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47004 * 90.00157 * 24 22 20 26 26 H 1.48495 * 109.47394 * 210.00050 * 24 22 20 27 27 H 1.48497 * 109.47198 * 330.00461 * 24 22 20 28 28 C 1.47905 * 110.99812 * 177.83367 * 15 5 3 29 29 H 1.08996 * 109.47186 * 59.99953 * 1 2 3 30 30 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46621 * 300.00251 * 1 2 3 32 32 H 1.07995 * 119.94228 * 359.97438 * 8 7 5 33 33 H 1.07996 * 119.97126 * 180.02562 * 9 8 7 34 34 H 1.08005 * 120.02688 * 179.97438 * 10 9 8 35 35 H 1.09005 * 109.47092 * 179.97438 * 13 12 11 36 36 H 1.09003 * 109.47167 * 300.00008 * 13 12 11 37 37 H 1.09002 * 109.47546 * 60.00199 * 13 12 11 38 38 H 1.08005 * 120.02521 * 359.97438 * 14 7 5 39 39 H 1.08997 * 110.67106 * 278.15108 * 16 15 5 40 40 H 1.09004 * 110.67028 * 41.28656 * 16 15 5 41 41 H 1.08999 * 110.72304 * 204.22925 * 17 16 15 42 42 H 1.09000 * 110.87319 * 81.01649 * 17 16 15 43 43 H 0.96702 * 114.00089 * 295.72000 * 19 18 17 44 44 H 0.97002 * 120.00216 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.92000 * 333.51341 * 28 15 5 46 46 H 1.09000 * 109.91545 * 94.80800 * 28 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0063 6 1 3.9722 0.4282 0.5599 7 6 4.0771 1.2395 -1.4111 8 6 3.9423 2.3515 -2.2220 9 6 4.4103 2.3224 -3.5225 10 6 5.0132 1.1812 -4.0156 11 6 5.1492 0.0642 -3.2044 12 8 5.7414 -1.0597 -3.6872 13 6 6.2004 -1.0211 -5.0400 14 6 4.6846 0.0983 -1.8974 15 7 3.9884 2.5271 0.6477 16 6 3.5109 2.5928 2.0527 17 6 4.4477 3.6456 2.6966 18 6 5.8091 3.3537 2.0249 19 8 6.6097 2.5223 2.8673 20 6 6.5301 4.6421 1.7225 21 1 6.7297 4.9217 0.6986 22 6 6.9345 5.4640 2.7529 23 7 6.6917 5.1234 3.9998 24 14 7.8275 7.0614 2.3781 25 1 6.8375 8.1574 2.2237 26 1 8.7536 7.3843 3.4931 27 1 8.6013 6.9124 1.1194 28 6 5.4631 2.6155 0.7185 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.4706 3.2442 -1.8387 33 1 4.3042 3.1923 -4.1536 34 1 5.3783 1.1588 -5.0318 35 1 6.6519 -1.9791 -5.2979 36 1 5.3583 -0.8253 -5.7039 37 1 6.9414 -0.2293 -5.1498 38 1 4.7939 -0.7683 -1.2622 39 1 2.4738 2.9258 2.0914 40 1 3.6241 1.6259 2.5431 41 1 4.5101 3.4981 3.7748 42 1 4.1125 4.6567 2.4657 43 1 6.8586 2.9352 3.7056 44 1 6.9766 5.7015 4.7248 45 1 5.8949 1.6148 0.7319 46 1 5.8430 3.1754 -0.1361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602852373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:15 Heat of formation + Delta-G solvation = -146.186780 kcal Electronic energy + Delta-G solvation = -30160.602990 eV Core-core repulsion = 26015.517370 eV Total energy + Delta-G solvation = -4145.085620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03436 -40.94905 -40.06508 -38.51735 -37.56712 -36.51941 -34.11655 -33.63294 -31.64881 -30.44899 -29.92067 -29.20761 -28.14119 -27.35700 -25.86320 -23.66395 -23.17649 -22.45194 -21.49339 -21.03905 -19.15514 -19.00393 -18.61816 -17.96007 -17.36262 -17.23554 -16.99982 -16.87814 -16.59778 -16.39143 -15.98153 -15.72919 -15.54654 -14.78630 -14.55112 -14.42625 -14.22157 -14.08115 -14.00109 -13.63970 -13.53161 -13.28573 -13.15829 -13.00021 -12.91221 -12.73148 -12.62809 -12.39719 -12.33202 -12.21899 -12.03145 -11.93147 -11.80719 -11.76676 -11.50330 -11.10199 -10.60574 -10.11640 -9.91815 -9.53854 -9.17026 -8.20642 -6.33591 0.16041 0.46614 1.06180 1.41886 1.43754 1.51832 1.53680 2.33472 2.40822 2.66566 2.99001 3.08889 3.49195 3.74491 3.80983 3.84531 3.98171 4.12221 4.21180 4.24711 4.28985 4.31331 4.33505 4.39095 4.41505 4.44418 4.52563 4.55748 4.65339 4.67475 4.71411 4.77314 4.96582 5.05755 5.16494 5.24014 5.26720 5.34609 5.46036 5.55259 5.57830 5.71090 5.75140 5.83026 5.93089 6.15021 6.45339 6.67914 6.70049 7.35972 7.45615 8.85785 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.004122 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.729712 B = 6791.369370 C = 8472.310642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.477 3.523 4 O -0.506 6.506 5 C 0.127 3.873 6 H 0.086 0.914 7 C -0.056 4.056 8 C -0.133 4.133 9 C -0.084 4.084 10 C -0.195 4.195 11 C 0.117 3.883 12 O -0.334 6.334 13 C 0.017 3.983 14 C -0.145 4.145 15 N -0.491 5.491 16 C 0.037 3.963 17 C -0.106 4.106 18 C 0.231 3.769 19 O -0.599 6.599 20 C -0.552 4.552 21 H 0.055 0.945 22 C 0.030 3.970 23 N -0.915 5.915 24 Si 0.959 3.041 25 H -0.277 1.277 26 H -0.280 1.280 27 H -0.272 1.272 28 C 0.077 3.923 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.379 0.621 44 H 0.269 0.731 45 H 0.040 0.960 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -12.240 -15.055 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.393 6.393 5 C 0.017 3.983 6 H 0.104 0.896 7 C -0.056 4.056 8 C -0.151 4.151 9 C -0.102 4.102 10 C -0.213 4.213 11 C 0.072 3.928 12 O -0.248 6.248 13 C -0.077 4.077 14 C -0.164 4.164 15 N -0.217 5.217 16 C -0.090 4.090 17 C -0.145 4.145 18 C 0.191 3.809 19 O -0.409 6.409 20 C -0.590 4.590 21 H 0.073 0.927 22 C -0.170 4.170 23 N -0.555 5.555 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.205 1.205 27 H -0.197 1.197 28 C -0.050 4.050 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.154 0.846 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.230 0.770 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.764 -12.089 -15.598 21.207 hybrid contribution 0.644 1.013 1.105 1.631 sum -7.119 -11.076 -14.494 19.582 Atomic orbital electron populations 1.23599 0.74307 1.05937 1.02632 1.86493 1.25370 1.32161 1.83771 1.23247 0.91050 0.81704 0.72093 1.90639 1.66877 1.37016 1.44719 1.20230 0.88230 0.94547 0.95304 0.89614 1.18949 0.99548 0.94592 0.92548 1.21072 1.01578 0.98032 0.94437 1.21224 0.95793 0.98439 0.94730 1.21573 1.04989 0.93118 1.01619 1.18930 0.94243 0.86724 0.92922 1.86048 1.72833 1.33957 1.31915 1.23371 0.99866 1.05257 0.79189 1.20318 1.02627 0.98799 0.94651 1.64719 1.09908 1.30355 1.16703 1.23289 0.99553 0.98602 0.87569 1.22742 0.96242 0.96930 0.98588 1.19536 0.87536 0.87610 0.86229 1.86071 1.73574 1.46410 1.34847 1.21909 1.38235 1.05530 0.93328 0.92716 1.25660 0.95675 1.00863 0.94849 1.69687 1.47365 1.39394 0.99053 0.85547 0.78456 0.79653 0.77893 1.20270 1.20535 1.19662 1.22592 0.85613 0.98780 0.98062 0.91829 0.84567 0.91927 0.86331 0.83174 0.82403 0.86289 0.91308 0.91831 0.84578 0.90400 0.93727 0.92689 0.93309 0.76994 0.92123 0.94160 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -9.93 10.56 -51.43 -0.54 -10.48 16 3 C 0.48 15.77 6.30 71.24 0.45 16.22 16 4 O -0.51 -19.00 15.43 21.99 0.34 -18.67 16 5 C 0.13 4.32 1.86 43.42 0.08 4.40 16 6 H 0.09 2.79 7.79 -2.39 -0.02 2.77 16 7 C -0.06 -1.76 4.09 -19.88 -0.08 -1.84 16 8 C -0.13 -4.11 9.20 22.28 0.20 -3.91 16 9 C -0.08 -2.07 10.04 22.25 0.22 -1.84 16 10 C -0.19 -4.28 9.04 22.37 0.20 -4.08 16 11 C 0.12 2.98 6.69 22.51 0.15 3.13 16 12 O -0.33 -7.55 10.50 -92.44 -0.97 -8.52 16 13 C 0.02 0.22 9.81 113.37 1.11 1.33 16 14 C -0.14 -4.15 9.61 22.37 0.21 -3.94 16 15 N -0.49 -19.71 4.30 -866.64 -3.73 -23.43 16 16 C 0.04 1.53 5.69 86.65 0.49 2.02 16 17 C -0.11 -5.12 5.49 31.80 0.17 -4.94 16 18 C 0.23 11.72 0.99 -10.66 -0.01 11.71 16 19 O -0.60 -31.73 12.93 -148.98 -1.93 -33.66 16 20 C -0.55 -30.25 8.10 25.60 0.21 -30.05 16 21 H 0.05 3.01 7.34 -2.91 -0.02 2.99 16 22 C 0.03 1.58 5.26 84.65 0.45 2.02 16 23 N -0.91 -49.41 10.88 21.45 0.23 -49.18 16 24 Si 0.96 42.92 29.54 68.60 2.03 44.95 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 C 0.08 3.42 5.33 86.44 0.46 3.88 16 29 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.12 4.11 7.90 -2.91 -0.02 4.09 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.16 2.38 6.30 -2.91 -0.02 2.36 16 35 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 37 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 38 H 0.14 3.63 7.99 -2.91 -0.02 3.61 16 39 H 0.08 3.13 7.30 -2.39 -0.02 3.11 16 40 H 0.04 1.74 7.99 -2.38 -0.02 1.72 16 41 H 0.05 2.73 8.05 -2.39 -0.02 2.71 16 42 H 0.05 2.52 7.86 -2.39 -0.02 2.50 16 43 H 0.38 20.53 7.05 -74.06 -0.52 20.01 16 44 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.04 1.77 7.52 -2.39 -0.02 1.75 16 46 H 0.08 3.48 7.39 -2.39 -0.02 3.47 16 Total: -1.00 -65.52 378.25 1.43 -64.09 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.48 Total: 39.04 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.52 Total: -4.15 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: -3.49 Total: -72.61 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -3.10 Total: -71.32 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.52 1.43 -64.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.101 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds