Wall clock time and date at job start Tue Mar 31 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 116.99746 * 2 1 4 4 O 1.20823 * 120.00545 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99501 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47236 * 326.40273 * 5 3 2 7 7 C 1.50693 * 109.46868 * 86.40482 * 5 3 2 8 8 C 1.38285 * 119.97552 * 73.99664 * 7 5 3 9 9 C 1.38244 * 120.11404 * 179.72362 * 8 7 5 10 10 C 1.38169 * 120.05662 * 0.54883 * 9 8 7 11 11 C 1.38712 * 119.93776 * 359.72706 * 10 9 8 12 12 O 1.35902 * 120.04899 * 179.97438 * 11 10 9 13 13 C 1.42895 * 117.00409 * 0.02562 * 12 11 10 14 14 C 1.38125 * 119.97251 * 254.27132 * 7 5 3 15 15 N 1.46900 * 109.46555 * 206.39987 * 5 3 2 16 16 C 1.48562 * 110.99909 * 63.05681 * 15 5 3 17 17 C 1.54376 * 104.59306 * 159.03653 * 16 15 5 18 18 C 1.54257 * 105.06382 * 336.14061 * 17 16 15 19 19 O 1.42901 * 110.32433 * 118.99779 * 18 17 16 20 20 C 1.50701 * 110.32545 * 241.10735 * 18 17 16 21 21 H 1.07997 * 119.99782 * 118.55064 * 20 18 17 22 22 C 1.37873 * 119.99865 * 298.53972 * 20 18 17 23 23 N 1.31515 * 120.00353 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99645 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46867 * 90.00846 * 24 22 20 26 26 H 1.48507 * 109.46810 * 210.00554 * 24 22 20 27 27 H 1.48493 * 109.47480 * 330.00336 * 24 22 20 28 28 C 1.48563 * 110.99473 * 178.46607 * 15 5 3 29 29 H 1.08999 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46856 * 299.99831 * 1 2 3 31 31 H 1.08994 * 109.47197 * 59.99751 * 1 2 3 32 32 H 1.07999 * 119.94472 * 359.97438 * 8 7 5 33 33 H 1.07999 * 119.97609 * 180.25286 * 9 8 7 34 34 H 1.07996 * 120.03096 * 179.74808 * 10 9 8 35 35 H 1.08997 * 109.47085 * 180.02562 * 13 12 11 36 36 H 1.09009 * 109.46732 * 299.99327 * 13 12 11 37 37 H 1.08991 * 109.47538 * 59.99462 * 13 12 11 38 38 H 1.07998 * 120.02541 * 359.97379 * 14 7 5 39 39 H 1.08992 * 110.41523 * 40.25663 * 16 15 5 40 40 H 1.09004 * 110.40550 * 277.81089 * 16 15 5 41 41 H 1.09006 * 110.32688 * 95.04091 * 17 16 15 42 42 H 1.09009 * 110.32130 * 217.24718 * 17 16 15 43 43 H 0.96702 * 113.99901 * 61.45596 * 19 18 17 44 44 H 0.96996 * 120.00311 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.40993 * 82.18279 * 28 15 5 46 46 H 1.08998 * 110.51667 * 319.79706 * 28 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9738 0.4392 0.5695 7 6 4.0732 1.2118 -1.4172 8 6 3.9350 2.3074 -2.2496 9 6 4.4040 2.2547 -3.5490 10 6 5.0021 1.1028 -4.0227 11 6 5.1368 0.0005 -3.1914 12 8 5.7243 -1.1338 -3.6551 13 6 6.1808 -1.1212 -5.0091 14 6 4.6704 0.0579 -1.8859 15 7 3.9902 2.5394 0.6163 16 6 3.5705 2.6053 2.0399 17 6 4.5046 3.6592 2.6724 18 6 5.7554 3.6795 1.7698 19 8 5.9318 4.9759 1.1952 20 6 6.9774 3.2874 2.5598 21 1 7.5401 2.4083 2.2830 22 6 7.3769 4.0513 3.6359 23 7 6.6914 5.1218 3.9732 24 14 8.8921 3.5656 4.6146 25 1 10.0908 4.2149 4.0258 26 1 8.7328 4.0055 6.0241 27 1 9.0570 2.0904 4.5722 28 6 5.4718 2.6362 0.6679 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.4634 3.2071 -1.8828 33 1 4.2985 3.1130 -4.1960 34 1 5.3647 1.0607 -5.0391 35 1 6.6278 -2.0855 -5.2508 36 1 5.3381 -0.9347 -5.6749 37 1 6.9242 -0.3341 -5.1347 38 1 4.7745 -0.7988 -1.2366 39 1 3.7078 1.6375 2.5219 40 1 2.5310 2.9246 2.1153 41 1 4.0242 4.6377 2.6757 42 1 4.7745 3.3656 3.6869 43 1 6.0695 5.6788 1.8449 44 1 6.9723 5.6589 4.7304 45 1 5.8639 2.9786 -0.2898 46 1 5.9084 1.6737 0.9341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602852378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:29 Heat of formation + Delta-G solvation = -125.924591 kcal Electronic energy + Delta-G solvation = -30149.850951 eV Core-core repulsion = 26005.643966 eV Total energy + Delta-G solvation = -4144.206985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.75496 -39.92158 -38.50313 -37.30990 -36.28809 -34.79618 -32.23154 -32.10137 -30.56386 -29.03772 -28.25081 -27.83274 -27.38705 -25.96946 -24.11301 -22.57217 -22.00894 -20.97157 -19.92955 -19.42997 -17.91290 -17.46990 -17.06586 -16.45425 -16.21114 -16.10547 -15.89353 -15.78804 -15.22812 -14.88405 -14.51173 -14.12715 -13.89024 -13.57933 -13.45585 -13.16775 -12.83107 -12.72181 -12.65898 -12.36302 -12.19537 -12.04097 -11.71189 -11.52853 -11.29129 -11.20815 -11.15331 -11.03959 -10.81505 -10.74340 -10.53387 -10.51575 -10.38049 -10.19842 -9.85743 -9.13695 -8.83191 -8.57790 -8.14191 -8.10831 -7.92344 -6.19702 -4.28661 1.24516 1.54337 2.35703 2.69410 3.19950 3.23261 3.30512 3.33343 3.79468 4.29783 4.48978 4.69357 4.78331 4.92449 4.98284 5.01545 5.06315 5.07388 5.09205 5.14286 5.25921 5.29757 5.46471 5.53083 5.53222 5.61627 5.71604 5.91986 5.96740 6.00520 6.16144 6.29746 6.39038 6.43686 6.53878 6.60740 6.69716 6.77553 6.92920 7.03699 7.27096 7.36804 7.43152 7.47674 7.57064 7.81007 7.94066 8.20586 8.74325 9.40312 9.58645 10.86926 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.004048 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.222206 B = 6916.177773 C = 8487.451258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.479 6.479 5 C 0.125 3.875 6 H 0.080 0.920 7 C -0.043 4.043 8 C -0.111 4.111 9 C -0.086 4.086 10 C -0.202 4.202 11 C 0.118 3.882 12 O -0.318 6.318 13 C 0.029 3.971 14 C -0.132 4.132 15 N -0.484 5.484 16 C 0.026 3.974 17 C -0.116 4.116 18 C 0.256 3.744 19 O -0.584 6.584 20 C -0.538 4.538 21 H 0.060 0.940 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.898 3.102 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.057 3.943 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.139 0.861 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.132 0.868 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.379 0.621 44 H 0.267 0.733 45 H 0.078 0.922 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.338 -11.246 -13.056 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.363 6.363 5 C 0.015 3.985 6 H 0.098 0.902 7 C -0.043 4.043 8 C -0.129 4.129 9 C -0.104 4.104 10 C -0.221 4.221 11 C 0.074 3.926 12 O -0.232 6.232 13 C -0.066 4.066 14 C -0.151 4.151 15 N -0.209 5.209 16 C -0.101 4.101 17 C -0.155 4.155 18 C 0.215 3.785 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.078 0.922 22 C -0.131 4.131 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.070 4.070 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.229 0.771 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.882 -10.894 -13.701 19.197 hybrid contribution 1.056 -0.431 1.397 1.803 sum -6.826 -11.326 -12.304 18.062 Atomic orbital electron populations 1.23222 0.76645 1.03385 1.02495 1.86515 1.23159 1.33719 1.84462 1.23423 0.91307 0.81390 0.72778 1.90656 1.66379 1.36062 1.43168 1.20204 0.87556 0.96082 0.94640 0.90249 1.19014 0.98410 0.93716 0.93189 1.21120 1.00080 0.98828 0.92901 1.20951 0.96718 0.97048 0.95684 1.21242 1.06303 0.94285 1.00221 1.18811 0.94796 0.85778 0.93263 1.86055 1.73339 1.34205 1.29620 1.23017 0.99026 1.03508 0.81092 1.20220 1.02355 0.98762 0.93765 1.65455 1.12363 1.26714 1.16411 1.23286 1.00371 0.99289 0.87168 1.22839 0.95788 0.96613 1.00285 1.19176 0.91520 0.81013 0.86751 1.86138 1.95148 1.18766 1.39193 1.21698 1.11577 1.11497 1.12859 0.92153 1.24985 0.96777 0.94722 0.96653 1.69708 1.39179 1.15877 1.28497 0.86500 0.83005 0.78912 0.79026 1.20453 1.21112 1.19847 1.23113 0.84196 0.98663 1.01022 0.88301 0.91929 0.92026 0.84346 0.85572 0.85644 0.88436 0.92846 0.92641 0.85000 0.94695 0.91085 0.92406 0.90835 0.77092 0.92307 0.90388 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.16 10.57 -39.26 -0.41 -5.57 16 3 C 0.47 7.84 6.37 36.01 0.23 8.07 16 4 O -0.48 -9.04 15.55 -18.75 -0.29 -9.33 16 5 C 0.13 2.12 1.94 -70.02 -0.14 1.98 16 6 H 0.08 1.26 7.78 -51.93 -0.40 0.86 16 7 C -0.04 -0.68 4.00 -104.65 -0.42 -1.09 16 8 C -0.11 -1.75 8.95 -39.56 -0.35 -2.10 16 9 C -0.09 -1.14 10.04 -39.60 -0.40 -1.54 16 10 C -0.20 -2.49 9.04 -39.43 -0.36 -2.85 16 11 C 0.12 1.61 6.69 -39.22 -0.26 1.35 16 12 O -0.32 -3.94 10.50 -19.43 -0.20 -4.15 16 13 C 0.03 0.23 9.81 101.05 0.99 1.22 16 14 C -0.13 -1.92 9.61 -39.43 -0.38 -2.30 16 15 N -0.48 -9.59 4.37 -224.80 -0.98 -10.57 16 16 C 0.03 0.53 5.70 -2.18 -0.01 0.52 16 17 C -0.12 -2.73 5.55 -25.35 -0.14 -2.87 16 18 C 0.26 6.36 1.05 -90.39 -0.10 6.26 16 19 O -0.58 -15.46 12.94 -35.23 -0.46 -15.92 16 20 C -0.54 -14.28 8.08 -34.44 -0.28 -14.56 16 21 H 0.06 1.59 7.58 -52.49 -0.40 1.20 16 22 C 0.07 1.86 5.02 -17.82 -0.09 1.77 16 23 N -0.89 -23.75 10.81 55.43 0.60 -23.15 16 24 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.06 1.23 4.98 -2.18 -0.01 1.22 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 32 H 0.14 2.39 7.90 -52.49 -0.41 1.98 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.36 7.66 -51.92 -0.40 -0.03 16 37 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 38 H 0.13 1.76 7.99 -52.49 -0.42 1.34 16 39 H 0.03 0.66 7.93 -51.93 -0.41 0.25 16 40 H 0.07 1.42 7.43 -51.93 -0.39 1.03 16 41 H 0.06 1.41 7.98 -51.93 -0.41 0.99 16 42 H 0.07 1.83 7.24 -51.92 -0.38 1.45 16 43 H 0.38 10.14 7.32 45.56 0.33 10.48 16 44 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 46 H 0.05 1.03 7.52 -51.93 -0.39 0.64 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -30.33 377.88 -7.77 -38.10 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.05 Total: 12.86 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.64 Total: -3.47 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.38 Total: -33.72 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.37 Total: -34.97 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.33 -7.77 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.820 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds