Wall clock time and date at job start Tue Mar 31 2020 19:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99998 * 2 1 4 4 C 1.52996 * 109.47049 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47046 * 67.64223 * 4 3 2 6 6 C 1.46496 * 119.99866 * 278.60336 * 5 4 3 7 7 C 1.50701 * 109.46941 * 269.99581 * 6 5 4 8 8 H 1.08008 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.37886 * 120.00109 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99700 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99771 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47457 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46931 * 120.00360 * 11 9 7 14 14 H 1.48500 * 109.46913 * 239.99925 * 11 9 7 15 15 C 1.34775 * 119.99601 * 98.60202 * 5 4 3 16 16 O 1.21586 * 119.99445 * 186.25465 * 15 5 4 17 17 C 1.47610 * 120.00391 * 6.25301 * 15 5 4 18 18 C 1.39698 * 120.04525 * 314.73136 * 17 15 5 19 19 C 1.37870 * 120.07042 * 179.97438 * 18 17 15 20 20 C 1.38773 * 119.91301 * 0.02562 * 19 18 17 21 21 C 1.39027 * 120.29607 * 359.97438 * 20 19 18 22 22 C 1.38043 * 120.21237 * 0.02562 * 21 20 19 23 23 O 1.36495 * 119.58457 * 179.97438 * 21 20 19 24 24 C 1.42719 * 115.88405 * 68.26443 * 23 21 20 25 25 C 1.52061 * 110.87432 * 275.53488 * 24 23 21 26 26 C 1.52062 * 112.28788 * 64.85911 * 25 24 23 27 27 O 1.36322 * 120.15003 * 179.97438 * 20 19 18 28 28 H 1.08999 * 109.47096 * 299.99815 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99666 * 1 2 3 30 30 H 1.09001 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46872 * 60.00283 * 3 2 1 32 32 H 1.08996 * 109.47412 * 300.00607 * 3 2 1 33 33 H 1.09005 * 109.47572 * 307.64294 * 4 3 2 34 34 H 1.09001 * 109.47363 * 187.64090 * 4 3 2 35 35 H 1.08998 * 109.47421 * 29.99486 * 6 5 4 36 36 H 1.08997 * 109.47043 * 150.00377 * 6 5 4 37 37 H 0.97004 * 120.00180 * 179.97438 * 10 9 7 38 38 H 1.07993 * 119.96841 * 0.02562 * 18 17 15 39 39 H 1.08008 * 120.04127 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.20003 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.08412 * 155.22050 * 24 23 21 42 42 H 1.09004 * 109.24688 * 35.95257 * 24 23 21 43 43 H 1.09005 * 108.90015 * 304.16985 * 25 24 23 44 44 H 1.08996 * 108.90454 * 185.55738 * 25 24 23 45 45 H 1.08998 * 109.21462 * 55.55487 * 26 25 24 46 46 H 1.09001 * 109.21250 * 174.87164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9812 0.6221 -1.2765 6 6 3.9321 -0.8255 -1.4962 7 6 5.2339 -1.4447 -1.0572 8 1 6.0193 -0.8222 -0.6543 9 6 5.4226 -2.8059 -1.1698 10 7 4.4665 -3.5638 -1.6608 11 14 7.0361 -3.5735 -0.6249 12 1 7.9409 -2.5130 -0.1133 13 1 6.7749 -4.5634 0.4507 14 1 7.6752 -4.2542 -1.7796 15 6 4.4366 1.4363 -2.2492 16 8 4.6991 0.9843 -3.3469 17 6 4.6165 2.8768 -1.9818 18 6 3.6224 3.5932 -1.3109 19 6 3.7901 4.9385 -1.0604 20 6 4.9479 5.5808 -1.4762 21 6 5.9409 4.8735 -2.1444 22 6 5.7821 3.5262 -2.3997 23 8 7.0736 5.5199 -2.5473 24 6 7.9422 5.9631 -1.5052 25 6 7.4985 7.3147 -0.9681 26 6 6.1390 7.2478 -0.2901 27 8 5.1186 6.9110 -1.2315 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8478 0.5304 0.8146 34 1 3.9780 2.1713 0.1373 35 1 3.1131 -1.2532 -0.9180 36 1 3.7730 -1.0270 -2.5556 37 1 4.5993 -4.5214 -1.7404 38 1 2.7219 3.0925 -0.9873 39 1 3.0214 5.4919 -0.5412 40 1 6.5535 2.9771 -2.9192 41 1 8.9555 6.0481 -1.8979 42 1 7.9323 5.2342 -0.6948 43 1 7.4462 8.0233 -1.7948 44 1 8.2358 7.6676 -0.2471 45 1 6.1665 6.4920 0.4948 46 1 5.9116 8.2169 0.1541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609136683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:16 Heat of formation + Delta-G solvation = -108.491500 kcal Electronic energy + Delta-G solvation = -29836.063373 eV Core-core repulsion = 25692.612343 eV Total energy + Delta-G solvation = -4143.451030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07595 -39.54352 -37.66511 -37.58537 -37.04528 -34.93638 -33.22186 -32.57286 -30.83849 -29.97055 -29.24622 -27.13391 -26.74585 -25.95725 -23.89680 -22.81502 -22.69528 -21.96349 -21.81206 -19.26741 -18.36439 -17.51956 -17.14033 -16.54796 -16.41465 -16.06791 -15.68872 -15.59321 -15.20668 -15.06366 -14.76332 -14.48936 -14.29054 -14.24623 -14.05492 -13.81256 -13.56049 -13.15410 -12.99082 -12.35921 -12.05182 -11.99369 -11.83748 -11.76266 -11.62358 -11.39536 -11.25415 -11.11126 -10.89428 -10.82507 -10.65740 -10.40415 -10.13114 -10.10175 -9.57363 -9.42231 -9.10091 -8.94363 -8.49782 -8.34944 -7.65813 -5.97191 -4.01248 0.78398 1.11782 2.98335 3.23002 3.33090 3.37957 3.40993 3.45225 3.84882 3.92867 4.01597 4.34187 4.41722 4.49322 4.70833 4.77701 4.81599 4.97364 5.02591 5.03383 5.15214 5.22553 5.29927 5.36859 5.38225 5.39415 5.43468 5.44564 5.54786 5.56354 5.63832 5.64994 5.77550 5.88073 5.98030 6.17463 6.21928 6.27503 6.39332 6.92960 7.24580 7.38811 7.41131 7.53911 7.63684 8.00544 8.31510 8.40728 8.89564 9.06978 9.62346 11.10952 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003692 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.573698 B = 7583.078908 C = 9237.810219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.040 3.960 4 C 0.099 3.901 5 N -0.580 5.580 6 C 0.245 3.755 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.545 3.455 16 O -0.530 6.530 17 C -0.102 4.102 18 C -0.099 4.099 19 C -0.122 4.122 20 C 0.074 3.926 21 C 0.060 3.940 22 C -0.067 4.067 23 O -0.316 6.316 24 C 0.057 3.943 25 C -0.187 4.187 26 C 0.059 3.941 27 O -0.319 6.319 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.261 0.739 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 21.316 7.632 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.038 4.038 4 C -0.025 4.025 5 N -0.310 5.310 6 C 0.126 3.874 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.331 3.669 16 O -0.408 6.408 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.030 3.970 21 C 0.017 3.983 22 C -0.086 4.086 23 O -0.232 6.232 24 C -0.018 4.018 25 C -0.224 4.224 26 C -0.015 4.015 27 O -0.236 6.236 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.122 0.878 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.282 20.861 6.754 21.965 hybrid contribution 0.817 -0.245 0.622 1.055 sum -0.466 20.617 7.375 21.901 Atomic orbital electron populations 1.22723 0.81975 1.02763 0.99133 1.88145 1.18802 1.26455 1.95090 1.23215 0.95186 0.85855 0.99526 1.21797 0.91466 1.00378 0.88905 1.48143 1.60549 1.09931 1.12365 1.19453 0.97651 0.71490 0.98779 1.21490 1.00563 0.92430 1.42103 0.92594 1.24902 0.96738 0.97046 0.95297 1.69952 1.32463 1.05307 1.45336 0.86487 0.83752 0.79161 0.78260 1.19911 1.21006 1.20951 1.18062 0.78894 0.84752 0.85198 1.90787 1.50879 1.76212 1.22876 1.20230 0.95144 0.95490 0.99675 1.21701 0.99411 0.93531 0.97103 1.20979 0.97878 0.93824 1.01368 1.19308 0.94988 0.83858 0.98860 1.18980 0.88129 0.90896 1.00345 1.21138 0.97976 0.91577 0.97891 1.86379 1.31062 1.73813 1.31977 1.22618 0.93561 0.94712 0.90883 1.22474 0.98017 0.99531 1.02414 1.22631 0.86927 1.01842 0.90134 1.86315 1.55943 1.19394 1.61942 0.94660 0.94494 0.89638 0.92748 0.93281 0.89008 0.89107 0.92702 0.94038 0.92882 0.83843 0.84372 0.83820 0.87839 0.92255 0.89849 0.89219 0.92296 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.24 8.90 -35.23 -0.31 -6.56 16 3 C 0.04 0.55 5.26 37.16 0.20 0.75 16 4 C 0.10 1.60 5.34 -4.04 -0.02 1.58 16 5 N -0.58 -12.43 2.46 -176.26 -0.43 -12.86 16 6 C 0.24 6.51 5.08 -5.20 -0.03 6.48 16 7 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 11 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.54 11.77 7.26 -12.44 -0.09 11.68 16 16 O -0.53 -13.82 16.54 5.29 0.09 -13.73 16 17 C -0.10 -1.71 5.12 -104.94 -0.54 -2.25 16 18 C -0.10 -1.31 7.37 -39.17 -0.29 -1.59 16 19 C -0.12 -1.42 9.98 -39.52 -0.39 -1.81 16 20 C 0.07 0.97 5.74 -39.09 -0.22 0.74 16 21 C 0.06 0.88 5.72 -39.36 -0.23 0.65 16 22 C -0.07 -1.08 9.64 -39.06 -0.38 -1.46 16 23 O -0.32 -4.36 10.16 -36.77 -0.37 -4.73 16 24 C 0.06 0.54 6.49 36.68 0.24 0.78 16 25 C -0.19 -1.40 5.93 -27.69 -0.16 -1.57 16 26 C 0.06 0.49 6.51 36.68 0.24 0.73 16 27 O -0.32 -3.83 10.15 -36.21 -0.37 -4.20 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.65 6.39 -51.93 -0.33 0.32 16 33 H 0.09 1.57 8.13 -51.93 -0.42 1.15 16 34 H 0.09 1.21 4.95 -51.93 -0.26 0.96 16 35 H 0.06 1.50 6.42 -51.93 -0.33 1.17 16 36 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 1.68 3.75 -52.49 -0.20 1.48 16 39 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -35.99 373.87 -7.56 -43.55 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.52 Total: -0.53 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.98 Total: 2.51 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.30 Total: -38.96 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.97 Total: -29.21 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.99 -7.56 -43.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.943 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds