Wall clock time and date at job start Tue Mar 31 2020 19:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99998 * 2 1 4 4 C 1.52996 * 109.47049 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47046 * 67.64223 * 4 3 2 6 6 C 1.46496 * 119.99866 * 278.60336 * 5 4 3 7 7 C 1.50701 * 109.46941 * 269.99581 * 6 5 4 8 8 H 1.08008 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.37886 * 120.00109 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99700 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99771 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47457 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.46931 * 120.00360 * 11 9 7 14 14 H 1.48500 * 109.46913 * 239.99925 * 11 9 7 15 15 C 1.34775 * 119.99601 * 98.60202 * 5 4 3 16 16 O 1.21586 * 119.99445 * 186.25465 * 15 5 4 17 17 C 1.47610 * 120.00391 * 6.25301 * 15 5 4 18 18 C 1.39698 * 120.04525 * 314.73136 * 17 15 5 19 19 C 1.37870 * 120.07042 * 179.97438 * 18 17 15 20 20 C 1.38773 * 119.91301 * 0.02562 * 19 18 17 21 21 C 1.39027 * 120.29607 * 359.97438 * 20 19 18 22 22 C 1.38043 * 120.21237 * 0.02562 * 21 20 19 23 23 O 1.36495 * 119.58457 * 179.97438 * 21 20 19 24 24 C 1.42719 * 115.88405 * 68.26443 * 23 21 20 25 25 C 1.52061 * 110.87432 * 275.53488 * 24 23 21 26 26 C 1.52062 * 112.28788 * 64.85911 * 25 24 23 27 27 O 1.36322 * 120.15003 * 179.97438 * 20 19 18 28 28 H 1.08999 * 109.47096 * 299.99815 * 1 2 3 29 29 H 1.09002 * 109.47275 * 59.99666 * 1 2 3 30 30 H 1.09001 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46872 * 60.00283 * 3 2 1 32 32 H 1.08996 * 109.47412 * 300.00607 * 3 2 1 33 33 H 1.09005 * 109.47572 * 307.64294 * 4 3 2 34 34 H 1.09001 * 109.47363 * 187.64090 * 4 3 2 35 35 H 1.08998 * 109.47421 * 29.99486 * 6 5 4 36 36 H 1.08997 * 109.47043 * 150.00377 * 6 5 4 37 37 H 0.97004 * 120.00180 * 179.97438 * 10 9 7 38 38 H 1.07993 * 119.96841 * 0.02562 * 18 17 15 39 39 H 1.08008 * 120.04127 * 180.02562 * 19 18 17 40 40 H 1.08003 * 120.20003 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.08412 * 155.22050 * 24 23 21 42 42 H 1.09004 * 109.24688 * 35.95257 * 24 23 21 43 43 H 1.09005 * 108.90015 * 304.16985 * 25 24 23 44 44 H 1.08996 * 108.90454 * 185.55738 * 25 24 23 45 45 H 1.08998 * 109.21462 * 55.55487 * 26 25 24 46 46 H 1.09001 * 109.21250 * 174.87164 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9812 0.6221 -1.2765 6 6 3.9321 -0.8255 -1.4962 7 6 5.2339 -1.4447 -1.0572 8 1 6.0193 -0.8222 -0.6543 9 6 5.4226 -2.8059 -1.1698 10 7 4.4665 -3.5638 -1.6608 11 14 7.0361 -3.5735 -0.6249 12 1 7.9409 -2.5130 -0.1133 13 1 6.7749 -4.5634 0.4507 14 1 7.6752 -4.2542 -1.7796 15 6 4.4366 1.4363 -2.2492 16 8 4.6991 0.9843 -3.3469 17 6 4.6165 2.8768 -1.9818 18 6 3.6224 3.5932 -1.3109 19 6 3.7901 4.9385 -1.0604 20 6 4.9479 5.5808 -1.4762 21 6 5.9409 4.8735 -2.1444 22 6 5.7821 3.5262 -2.3997 23 8 7.0736 5.5199 -2.5473 24 6 7.9422 5.9631 -1.5052 25 6 7.4985 7.3147 -0.9681 26 6 6.1390 7.2478 -0.2901 27 8 5.1186 6.9110 -1.2315 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8478 0.5304 0.8146 34 1 3.9780 2.1713 0.1373 35 1 3.1131 -1.2532 -0.9180 36 1 3.7730 -1.0270 -2.5556 37 1 4.5993 -4.5214 -1.7404 38 1 2.7219 3.0925 -0.9873 39 1 3.0214 5.4919 -0.5412 40 1 6.5535 2.9771 -2.9192 41 1 8.9555 6.0481 -1.8979 42 1 7.9323 5.2342 -0.6948 43 1 7.4462 8.0233 -1.7948 44 1 8.2358 7.6676 -0.2471 45 1 6.1665 6.4920 0.4948 46 1 5.9116 8.2169 0.1541 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609136683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:15 Heat of formation + Delta-G solvation = -133.577372 kcal Electronic energy + Delta-G solvation = -29837.151178 eV Core-core repulsion = 25692.612343 eV Total energy + Delta-G solvation = -4144.538835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11289 -40.97327 -38.81099 -38.56640 -38.27059 -36.62581 -34.85411 -33.85471 -31.94948 -31.44988 -30.41425 -28.91143 -27.58490 -27.07800 -25.54017 -24.23375 -23.79689 -23.32877 -22.57465 -20.63815 -19.37375 -18.79229 -18.61703 -18.11822 -17.75992 -17.27802 -17.03391 -16.54751 -16.45253 -16.32297 -16.11285 -16.05561 -15.47103 -15.17045 -15.08048 -14.94460 -14.79675 -14.35784 -14.24598 -14.02210 -13.45745 -13.29059 -13.13476 -13.02728 -12.98257 -12.75185 -12.66593 -12.52151 -12.28021 -12.18083 -11.96909 -11.79855 -11.66554 -11.39891 -11.03044 -10.82272 -10.63254 -10.48650 -10.03424 -9.61818 -9.44909 -8.19441 -6.33898 -0.33927 0.04944 1.35724 1.38479 1.49834 1.65922 2.02364 2.37936 2.41678 2.47920 2.73518 2.94054 3.10825 3.46217 3.63835 3.73653 3.86478 3.93387 4.11183 4.18064 4.22238 4.23700 4.25396 4.35542 4.39027 4.40297 4.48738 4.56359 4.63039 4.63799 4.79891 4.85192 4.86623 4.90753 4.96638 5.10370 5.11425 5.16172 5.22559 5.30543 5.36394 5.55629 5.85404 6.07517 6.09575 6.35450 6.46550 6.68401 6.75752 7.22413 7.39118 8.88254 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.003692 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.573698 B = 7583.078908 C = 9237.810219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.040 3.960 4 C 0.093 3.907 5 N -0.583 5.583 6 C 0.266 3.734 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.267 1.267 13 H -0.268 1.268 14 H -0.282 1.282 15 C 0.539 3.461 16 O -0.594 6.594 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.102 4.102 20 C 0.084 3.916 21 C 0.057 3.943 22 C -0.085 4.085 23 O -0.340 6.340 24 C 0.044 3.956 25 C -0.182 4.182 26 C 0.049 3.951 27 O -0.330 6.330 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.044 0.956 36 H -0.010 1.010 37 H 0.266 0.734 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.068 0.932 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 24.597 10.666 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C -0.037 4.037 4 C -0.029 4.029 5 N -0.312 5.312 6 C 0.145 3.855 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.792 3.208 12 H -0.191 1.191 13 H -0.193 1.193 14 H -0.208 1.208 15 C 0.328 3.672 16 O -0.476 6.476 17 C -0.124 4.124 18 C -0.104 4.104 19 C -0.120 4.120 20 C 0.039 3.961 21 C 0.013 3.987 22 C -0.104 4.104 23 O -0.257 6.257 24 C -0.030 4.030 25 C -0.219 4.219 26 C -0.024 4.024 27 O -0.247 6.247 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.008 0.992 37 H 0.075 0.925 38 H 0.180 0.820 39 H 0.199 0.801 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.087 0.913 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.376 24.189 9.843 26.151 hybrid contribution 0.870 -1.121 -0.312 1.453 sum -0.506 23.068 9.531 24.964 Atomic orbital electron populations 1.22873 0.79963 1.03101 1.00975 1.88075 1.21217 1.28540 1.95504 1.23309 0.92897 0.85308 1.02163 1.22170 0.93832 1.01318 0.85628 1.48083 1.60575 1.08053 1.14473 1.18817 0.96626 0.74954 0.95106 1.21765 1.01196 0.93051 1.42379 0.92992 1.25848 1.00586 0.97545 0.95103 1.70079 1.34643 1.05774 1.46087 0.85374 0.78978 0.78389 0.78089 1.19089 1.19304 1.20782 1.18818 0.77351 0.86847 0.84145 1.90732 1.53476 1.77954 1.25418 1.19772 0.97196 0.92462 1.03013 1.21805 0.98586 0.94196 0.95811 1.21316 0.97895 0.92857 0.99971 1.19467 0.94646 0.84425 0.97535 1.18991 0.89154 0.90163 1.00373 1.20981 0.97710 0.92721 0.99028 1.86333 1.31434 1.73800 1.34155 1.22976 0.93697 0.95980 0.90311 1.22465 0.98752 0.97770 1.02925 1.23008 0.86202 1.03639 0.89578 1.86297 1.57258 1.18168 1.63006 0.91491 0.93797 0.90271 0.87775 0.92548 0.90246 0.85772 0.93824 0.99226 0.92495 0.82013 0.80145 0.86318 0.86254 0.92080 0.90524 0.85829 0.91344 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.41 -13.97 8.90 -148.98 -1.33 -15.30 16 3 C 0.04 1.03 5.26 71.98 0.38 1.41 16 4 C 0.09 2.95 5.34 86.38 0.46 3.41 16 5 N -0.58 -26.18 2.46 -829.83 -2.04 -28.23 16 6 C 0.27 15.11 5.08 85.63 0.43 15.54 16 7 C -0.55 -32.69 9.39 25.60 0.24 -32.45 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.48 5.46 84.66 0.46 0.95 16 10 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 11 Si 0.97 46.16 29.54 68.60 2.03 48.18 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 15 C 0.54 24.73 7.26 86.72 0.63 25.36 16 16 O -0.59 -33.72 16.54 -3.99 -0.07 -33.78 16 17 C -0.12 -4.15 5.12 -20.07 -0.10 -4.25 16 18 C -0.09 -2.06 7.37 22.54 0.17 -1.89 16 19 C -0.10 -1.96 9.98 22.31 0.22 -1.74 16 20 C 0.08 1.95 5.74 22.59 0.13 2.08 16 21 C 0.06 1.63 5.72 22.41 0.13 1.76 16 22 C -0.08 -2.88 9.64 22.61 0.22 -2.66 16 23 O -0.34 -9.26 10.16 -84.51 -0.86 -10.12 16 24 C 0.04 0.77 6.49 71.67 0.47 1.23 16 25 C -0.18 -2.12 5.93 29.98 0.18 -1.95 16 26 C 0.05 0.61 6.51 71.67 0.47 1.07 16 27 O -0.33 -6.69 10.15 -82.49 -0.84 -7.53 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.06 1.36 6.39 -2.39 -0.02 1.35 16 33 H 0.08 2.72 8.13 -2.38 -0.02 2.70 16 34 H 0.12 3.06 4.95 -2.39 -0.01 3.05 16 35 H 0.04 2.55 6.42 -2.39 -0.02 2.54 16 36 H -0.01 -0.69 7.34 -2.39 -0.02 -0.71 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.16 3.25 3.75 -2.91 -0.01 3.24 16 39 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 41 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.06 1.02 7.93 -2.38 -0.02 1.01 16 43 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.74 7.93 -2.39 -0.02 0.72 16 46 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -86.14 373.87 3.90 -82.24 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.00 Total: 12.34 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 5.73 Total: 9.77 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.76 Total: -85.81 kcal Atomic # 8 Polarization: -63.64 SS G_CDS: -3.09 Total: -66.73 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -86.14 3.90 -82.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609136683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.338 kcal (2) G-P(sol) polarization free energy of solvation -86.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds