Wall clock time and date at job start Tue Mar 31 2020 18:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.80999 * 109.47201 * 2 1 4 4 C 1.76197 * 100.00065 * 179.97438 * 3 2 1 5 5 C 1.39471 * 119.54769 * 179.97438 * 4 3 2 6 6 C 1.36805 * 119.38242 * 180.02562 * 5 4 3 7 7 C 1.40400 * 118.49825 * 359.97438 * 6 5 4 8 8 C 1.47500 * 120.47379 * 180.02562 * 7 6 5 9 9 O 1.21594 * 119.99850 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00147 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00351 * 179.97438 * 10 8 7 12 12 C 1.53041 * 109.46163 * 275.03152 * 11 10 8 13 13 C 1.53195 * 109.31158 * 178.59748 * 12 11 10 14 14 N 1.46926 * 108.76679 * 54.65779 * 13 12 11 15 15 C 1.36935 * 120.63378 * 126.40619 * 14 13 12 16 16 H 1.07998 * 119.99811 * 331.81785 * 15 14 13 17 17 C 1.38803 * 120.00099 * 151.82706 * 15 14 13 18 18 N 1.31621 * 120.00289 * 343.06851 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 163.07218 * 17 15 14 20 20 H 1.48503 * 109.47293 * 89.99820 * 19 17 15 21 21 H 1.48498 * 109.47161 * 209.99470 * 19 17 15 22 22 H 1.48497 * 109.47000 * 329.99504 * 19 17 15 23 23 C 1.46925 * 118.73315 * 306.38078 * 14 13 12 24 24 C 1.53039 * 109.46461 * 154.97186 * 11 10 8 25 25 C 1.39596 * 119.05547 * 0.02562 * 7 6 5 26 26 N 1.31651 * 120.52329 * 0.02562 * 25 7 6 27 27 H 1.08999 * 109.47063 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46971 * 300.00222 * 1 2 3 30 30 H 1.08997 * 109.47207 * 239.99565 * 2 1 3 31 31 H 1.09007 * 109.47001 * 119.99570 * 2 1 3 32 32 H 1.08004 * 120.30765 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.75643 * 179.97438 * 6 5 4 34 34 H 0.97007 * 120.00055 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.45745 * 35.00217 * 11 10 8 36 36 H 1.08996 * 109.49727 * 298.56270 * 12 11 10 37 37 H 1.08997 * 109.50012 * 58.66028 * 12 11 10 38 38 H 1.09000 * 109.59994 * 294.86262 * 13 12 11 39 39 H 1.09000 * 109.69833 * 174.50282 * 13 12 11 40 40 H 0.96999 * 120.00498 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.59115 * 293.81750 * 23 14 13 42 42 H 1.09000 * 109.70364 * 173.46899 * 23 14 13 43 43 H 1.09000 * 109.50090 * 301.34177 * 24 11 10 44 44 H 1.09000 * 109.49361 * 61.40400 * 24 11 10 45 45 H 1.07999 * 119.73687 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4165 0.0008 5 6 4.7494 2.5001 0.0004 6 6 6.0981 2.2711 0.0005 7 6 6.5520 0.9425 0.0015 8 6 7.9968 0.6456 0.0022 9 8 8.8043 1.5547 0.0014 10 7 8.4220 -0.6333 0.0036 11 6 9.8569 -0.9282 0.0037 12 6 10.3816 -0.9086 -1.4338 13 6 11.8888 -1.1827 -1.4268 14 7 12.1369 -2.4418 -0.7113 15 6 12.8579 -3.4473 -1.2979 16 1 12.8655 -3.5500 -2.3730 17 6 13.5790 -4.3347 -0.5109 18 7 13.8495 -4.0336 0.7415 19 14 14.1655 -5.9563 -1.2292 20 1 15.5141 -5.7752 -1.8241 21 1 14.2319 -6.9786 -0.1543 22 1 13.2168 -6.4040 -2.2803 23 6 11.5972 -2.6012 0.6459 24 6 10.0933 -2.3108 0.6158 25 6 5.6164 -0.0935 0.0018 26 7 4.3266 0.1703 0.0007 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.3681 3.5106 -0.0007 33 1 6.7980 3.0937 -0.0002 34 1 7.7778 -1.3586 0.0038 35 1 10.3822 -0.1760 0.5923 36 1 9.8745 -1.6774 -2.0167 37 1 10.1919 0.0689 -1.8771 38 1 12.4064 -0.3672 -0.9217 39 1 12.2517 -1.2670 -2.4511 40 1 14.3536 -4.6535 1.2914 41 1 12.0910 -1.9014 1.3201 42 1 11.7655 -3.6213 0.9909 43 1 9.6984 -2.3315 1.6315 44 1 9.5885 -3.0663 0.0137 45 1 5.9534 -1.1196 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:03 Heat of formation + Delta-G solvation = 11.036034 kcal Electronic energy + Delta-G solvation = -25712.429877 eV Core-core repulsion = 22049.207573 eV Total energy + Delta-G solvation = -3663.222305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79872 -39.24630 -37.32208 -34.57399 -33.46687 -32.78991 -32.59135 -31.53229 -30.11559 -29.33502 -25.80072 -24.77586 -24.01682 -23.48826 -22.33072 -21.95762 -20.52876 -19.47645 -18.49695 -17.67376 -17.07178 -16.62532 -15.89890 -15.53905 -15.42426 -15.15631 -15.02526 -14.75968 -14.18844 -14.12898 -13.79087 -13.56714 -13.50490 -13.26565 -12.98186 -12.77377 -12.65799 -12.40751 -12.00821 -11.95129 -11.49901 -11.15944 -10.94162 -10.87794 -10.72740 -10.55614 -10.41181 -10.34896 -10.27831 -10.18763 -10.06814 -9.87261 -9.72346 -9.52492 -8.81445 -8.48365 -8.01064 -6.70565 -5.81691 -3.23862 0.19034 0.86747 1.05362 1.72823 2.67397 3.18048 3.36063 3.43077 3.45193 3.53812 3.99597 4.45584 4.47759 4.48759 4.52137 4.54917 4.68777 4.74774 4.94970 5.16884 5.30096 5.31633 5.36732 5.37716 5.46424 5.54278 5.55622 5.60477 5.75025 5.82768 6.03958 6.05589 6.21009 6.27989 6.48962 6.51974 6.54656 6.76617 6.84234 6.96513 7.21755 7.28405 7.52682 7.63047 7.77754 8.23033 8.42468 9.18593 9.81758 10.38720 11.27316 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.002060 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.487134 B =13591.129538 C =14380.221446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 S -0.066 6.066 4 C 0.134 3.866 5 C -0.158 4.158 6 C -0.001 4.001 7 C -0.188 4.188 8 C 0.560 3.440 9 O -0.535 6.535 10 N -0.717 5.717 11 C 0.151 3.849 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.174 3.826 24 C -0.147 4.147 25 C 0.151 3.849 26 N -0.492 5.492 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.394 0.606 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.472 9.801 -0.036 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.251 4.251 3 S 0.175 5.825 4 C -0.115 4.115 5 C -0.184 4.184 6 C -0.029 4.029 7 C -0.196 4.196 8 C 0.345 3.655 9 O -0.413 6.413 10 N -0.366 5.366 11 C 0.048 3.952 12 C -0.180 4.180 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.187 4.187 25 C -0.011 4.011 26 N -0.205 5.205 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.229 0.771 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.143 10.648 0.081 28.228 hybrid contribution 1.391 -1.716 -0.295 2.228 sum -24.752 8.933 -0.214 26.315 Atomic orbital electron populations 1.21603 0.92252 1.03216 1.03014 1.23428 0.99382 0.95073 1.07194 1.85798 0.93592 1.12558 1.90600 1.23334 0.99236 0.91809 0.97107 1.21415 0.93055 0.99694 1.04273 1.21395 0.95234 0.96548 0.89747 1.21089 0.94999 0.95306 1.08207 1.17905 0.87145 0.83493 0.76943 1.90797 1.55455 1.45136 1.49903 1.46292 1.09644 1.06626 1.74085 1.21112 0.78097 0.98298 0.97693 1.22384 0.99622 1.00437 0.95517 1.20875 0.91251 0.89149 0.96685 1.44089 1.60655 1.12329 1.14445 1.19169 1.22157 1.05280 0.91560 0.91665 1.25058 0.97677 1.00339 0.96618 1.70021 1.41646 1.35524 1.07565 0.86304 0.78675 0.83734 0.78099 1.21378 1.21562 1.20510 1.20739 0.85853 1.02300 0.86337 1.22552 1.02697 0.94390 0.99076 1.22965 0.87509 0.99244 0.91358 1.68068 1.16728 1.19999 1.15720 0.91688 0.90556 0.91694 0.88701 0.88702 0.83696 0.82935 0.77126 0.89764 0.92255 0.92670 0.96136 0.92496 0.93585 0.96052 0.88969 0.92650 0.92094 0.81939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.92 37.16 0.37 -0.32 16 2 C -0.10 -0.70 5.54 37.16 0.21 -0.49 16 3 S -0.07 -0.54 22.05 -107.50 -2.37 -2.91 16 4 C 0.13 1.34 6.98 -16.72 -0.12 1.22 16 5 C -0.16 -1.47 9.77 -39.64 -0.39 -1.85 16 6 C 0.00 -0.02 9.65 -39.29 -0.38 -0.39 16 7 C -0.19 -2.19 5.89 -104.80 -0.62 -2.80 16 8 C 0.56 8.06 7.73 -12.49 -0.10 7.96 16 9 O -0.54 -9.62 16.07 5.28 0.08 -9.53 16 10 N -0.72 -9.73 5.03 -54.82 -0.28 -10.00 16 11 C 0.15 2.55 2.42 -67.89 -0.16 2.39 16 12 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 13 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 14 N -0.59 -14.60 2.99 -172.32 -0.52 -15.11 16 15 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 18 N -0.90 -25.84 11.19 55.49 0.62 -25.21 16 19 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 24 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 25 C 0.15 1.54 10.71 -17.12 -0.18 1.36 16 26 N -0.49 -5.22 9.10 -11.67 -0.11 -5.32 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.69 8.12 -51.92 -0.42 0.27 16 31 H 0.09 0.69 8.12 -51.91 -0.42 0.27 16 32 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.15 1.52 7.73 -52.48 -0.41 1.11 16 34 H 0.39 4.21 6.65 -40.82 -0.27 3.93 16 35 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.16 1.27 6.41 -52.49 -0.34 0.94 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -31.54 379.59 -10.57 -42.11 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.75 Total: 2.15 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.94 Total: 1.76 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.28 Total: -55.66 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.37 Total: -2.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.54 -10.57 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.145 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds