Wall clock time and date at job start Tue Mar 31 2020 18:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.80999 * 109.47201 * 2 1 4 4 C 1.76197 * 100.00065 * 179.97438 * 3 2 1 5 5 C 1.39471 * 119.54769 * 179.97438 * 4 3 2 6 6 C 1.36805 * 119.38242 * 180.02562 * 5 4 3 7 7 C 1.40400 * 118.49825 * 359.97438 * 6 5 4 8 8 C 1.47500 * 120.47379 * 180.02562 * 7 6 5 9 9 O 1.21594 * 119.99850 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00147 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00351 * 179.97438 * 10 8 7 12 12 C 1.53041 * 109.46163 * 275.03152 * 11 10 8 13 13 C 1.53195 * 109.31158 * 178.59748 * 12 11 10 14 14 N 1.46926 * 108.76679 * 54.65779 * 13 12 11 15 15 C 1.36935 * 120.63378 * 126.40619 * 14 13 12 16 16 H 1.07998 * 119.99811 * 331.81785 * 15 14 13 17 17 C 1.38803 * 120.00099 * 151.82706 * 15 14 13 18 18 N 1.31621 * 120.00289 * 343.06851 * 17 15 14 19 19 Si 1.86804 * 120.00068 * 163.07218 * 17 15 14 20 20 H 1.48503 * 109.47293 * 89.99820 * 19 17 15 21 21 H 1.48498 * 109.47161 * 209.99470 * 19 17 15 22 22 H 1.48497 * 109.47000 * 329.99504 * 19 17 15 23 23 C 1.46925 * 118.73315 * 306.38078 * 14 13 12 24 24 C 1.53039 * 109.46461 * 154.97186 * 11 10 8 25 25 C 1.39596 * 119.05547 * 0.02562 * 7 6 5 26 26 N 1.31651 * 120.52329 * 0.02562 * 25 7 6 27 27 H 1.08999 * 109.47063 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46971 * 300.00222 * 1 2 3 30 30 H 1.08997 * 109.47207 * 239.99565 * 2 1 3 31 31 H 1.09007 * 109.47001 * 119.99570 * 2 1 3 32 32 H 1.08004 * 120.30765 * 359.97438 * 5 4 3 33 33 H 1.08003 * 120.75643 * 179.97438 * 6 5 4 34 34 H 0.97007 * 120.00055 * 0.02562 * 10 8 7 35 35 H 1.09003 * 109.45745 * 35.00217 * 11 10 8 36 36 H 1.08996 * 109.49727 * 298.56270 * 12 11 10 37 37 H 1.08997 * 109.50012 * 58.66028 * 12 11 10 38 38 H 1.09000 * 109.59994 * 294.86262 * 13 12 11 39 39 H 1.09000 * 109.69833 * 174.50282 * 13 12 11 40 40 H 0.96999 * 120.00498 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.59115 * 293.81750 * 23 14 13 42 42 H 1.09000 * 109.70364 * 173.46899 * 23 14 13 43 43 H 1.09000 * 109.50090 * 301.34177 * 24 11 10 44 44 H 1.09000 * 109.49361 * 61.40400 * 24 11 10 45 45 H 1.07999 * 119.73687 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1333 1.7065 0.0000 4 6 3.8713 1.4165 0.0008 5 6 4.7494 2.5001 0.0004 6 6 6.0981 2.2711 0.0005 7 6 6.5520 0.9425 0.0015 8 6 7.9968 0.6456 0.0022 9 8 8.8043 1.5547 0.0014 10 7 8.4220 -0.6333 0.0036 11 6 9.8569 -0.9282 0.0037 12 6 10.3816 -0.9086 -1.4338 13 6 11.8888 -1.1827 -1.4268 14 7 12.1369 -2.4418 -0.7113 15 6 12.8579 -3.4473 -1.2979 16 1 12.8655 -3.5500 -2.3730 17 6 13.5790 -4.3347 -0.5109 18 7 13.8495 -4.0336 0.7415 19 14 14.1655 -5.9563 -1.2292 20 1 15.5141 -5.7752 -1.8241 21 1 14.2319 -6.9786 -0.1543 22 1 13.2168 -6.4040 -2.2803 23 6 11.5972 -2.6012 0.6459 24 6 10.0933 -2.3108 0.6158 25 6 5.6164 -0.0935 0.0018 26 7 4.3266 0.1703 0.0007 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.3681 3.5106 -0.0007 33 1 6.7980 3.0937 -0.0002 34 1 7.7778 -1.3586 0.0038 35 1 10.3822 -0.1760 0.5923 36 1 9.8745 -1.6774 -2.0167 37 1 10.1919 0.0689 -1.8771 38 1 12.4064 -0.3672 -0.9217 39 1 12.2517 -1.2670 -2.4511 40 1 14.3536 -4.6535 1.2914 41 1 12.0910 -1.9014 1.3201 42 1 11.7655 -3.6213 0.9909 43 1 9.6984 -2.3315 1.6315 44 1 9.5885 -3.0663 0.0137 45 1 5.9534 -1.1196 0.0029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328539.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:02 Heat of formation + Delta-G solvation = -7.610265 kcal Electronic energy + Delta-G solvation = -25713.238442 eV Core-core repulsion = 22049.207573 eV Total energy + Delta-G solvation = -3664.030869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73021 -40.36926 -38.87718 -36.09959 -34.16933 -34.04451 -33.43500 -32.76495 -31.70811 -30.97292 -27.24311 -25.98785 -24.88685 -24.12429 -23.92061 -23.50481 -21.70229 -21.05975 -19.42200 -18.87994 -18.33579 -17.90216 -16.93028 -16.59042 -16.49765 -16.24071 -16.05928 -15.82597 -15.56000 -15.35415 -15.02253 -14.94998 -14.73833 -14.34723 -14.26055 -14.15746 -13.88312 -13.26137 -13.21584 -13.01696 -12.62968 -12.58249 -12.51724 -12.39511 -12.25812 -12.03163 -11.88117 -11.60779 -11.50302 -11.42864 -11.22660 -11.18356 -10.93850 -10.67341 -10.55934 -10.08834 -8.70769 -8.67861 -7.88002 -5.33482 -0.64539 0.11189 0.38778 1.13236 1.48264 1.49616 1.59504 1.67630 2.03995 2.51977 2.65092 3.26293 3.28334 3.58923 3.67124 3.74360 3.83803 3.89917 3.95137 4.04111 4.04296 4.07538 4.31686 4.45397 4.49060 4.55738 4.64306 4.76344 4.79074 4.84771 4.90851 4.93959 4.94383 5.03440 5.05305 5.14519 5.23091 5.29241 5.29852 5.46454 5.48021 5.64719 5.71394 6.38773 6.43313 6.49924 7.13219 7.14517 7.83992 8.36766 9.19125 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022768 B = 0.002060 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.487134 B =13591.129538 C =14380.221446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 S -0.056 6.056 4 C 0.124 3.876 5 C -0.157 4.157 6 C -0.005 4.005 7 C -0.203 4.203 8 C 0.563 3.437 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.163 3.837 12 C -0.124 4.124 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.067 0.933 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.269 1.269 23 C 0.178 3.822 24 C -0.129 4.129 25 C 0.157 3.843 26 N -0.502 5.502 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.008 0.992 39 H 0.058 0.942 40 H 0.251 0.749 41 H -0.005 1.005 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.287 9.404 -0.740 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.249 4.249 3 S 0.186 5.814 4 C -0.124 4.124 5 C -0.183 4.183 6 C -0.033 4.033 7 C -0.212 4.212 8 C 0.351 3.649 9 O -0.457 6.457 10 N -0.355 5.355 11 C 0.058 3.942 12 C -0.165 4.165 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.393 4.393 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.194 1.194 23 C 0.052 3.948 24 C -0.169 4.169 25 C -0.004 4.004 26 N -0.215 5.215 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.185 0.815 33 H 0.171 0.829 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.026 0.974 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.013 0.987 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -29.021 10.254 -0.637 30.786 hybrid contribution 2.186 -1.505 -0.078 2.655 sum -26.835 8.749 -0.716 28.234 Atomic orbital electron populations 1.21614 0.90669 1.04181 1.03307 1.23500 1.00658 0.93994 1.06773 1.85796 0.92095 1.13651 1.89865 1.23755 1.00534 0.91919 0.96205 1.21634 0.92371 1.00722 1.03551 1.21506 0.95953 0.96292 0.89569 1.20857 0.93268 0.96315 1.10739 1.18248 0.88072 0.82899 0.75678 1.90780 1.56784 1.46276 1.51843 1.45963 1.08387 1.07275 1.73859 1.20704 0.79922 0.97036 0.96512 1.22180 0.96982 1.00892 0.96398 1.20966 0.93635 0.87473 0.96122 1.44345 1.60852 1.13077 1.14945 1.19496 1.22010 1.05890 0.91866 0.91509 1.25818 0.98285 1.03429 0.97043 1.70179 1.42698 1.36439 1.08806 0.85270 0.78075 0.79658 0.77373 1.21426 1.21776 1.19367 1.20567 0.89166 0.99881 0.85231 1.22272 0.98651 0.95068 1.00905 1.23261 0.87195 0.99869 0.90121 1.68151 1.16687 1.20341 1.16352 0.91390 0.89251 0.91385 0.89111 0.89092 0.81455 0.82889 0.75040 0.92067 0.91350 0.92120 0.97435 0.92376 0.94017 0.98713 0.91790 0.90344 0.90891 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.92 71.98 0.71 -0.30 16 2 C -0.10 -1.17 5.54 71.98 0.40 -0.77 16 3 S -0.06 -0.78 22.05 -56.49 -1.25 -2.03 16 4 C 0.12 2.24 6.98 84.86 0.59 2.83 16 5 C -0.16 -2.62 9.77 22.23 0.22 -2.40 16 6 C -0.01 -0.11 9.65 22.46 0.22 0.11 16 7 C -0.20 -4.44 5.89 -19.98 -0.12 -4.56 16 8 C 0.56 15.64 7.73 86.69 0.67 16.31 16 9 O -0.58 -20.67 16.07 -4.01 -0.06 -20.74 16 10 N -0.70 -17.85 5.03 -445.62 -2.24 -20.10 16 11 C 0.16 5.36 2.42 45.02 0.11 5.47 16 12 C -0.12 -4.35 5.65 30.67 0.17 -4.18 16 13 C 0.14 6.18 6.52 86.36 0.56 6.74 16 14 N -0.61 -30.40 2.99 -699.11 -2.09 -32.50 16 15 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 16 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 17 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 18 N -0.94 -54.82 11.19 21.65 0.24 -54.58 16 19 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.18 8.37 5.30 86.36 0.46 8.82 16 24 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 25 C 0.16 2.86 10.71 85.05 0.91 3.78 16 26 N -0.50 -9.58 9.10 -190.82 -1.74 -11.31 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.09 1.15 8.12 -2.40 -0.02 1.13 16 31 H 0.09 1.15 8.12 -2.39 -0.02 1.13 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.15 2.96 7.73 -2.91 -0.02 2.94 16 34 H 0.41 7.61 6.65 -92.70 -0.62 6.99 16 35 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.19 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -68.93 379.59 1.57 -67.36 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.38 Total: 15.91 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.30 Total: 11.72 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.83 Total: -118.48 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.25 Total: -2.03 kcal Total: -68.93 1.57 -67.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328539.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.750 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds