Wall clock time and date at job start Tue Mar 31 2020 19:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99910 * 2 1 4 4 C 1.52993 * 109.47130 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46873 * 65.00429 * 4 3 2 6 6 C 1.46497 * 120.00215 * 269.99659 * 5 4 3 7 7 C 1.50701 * 109.47139 * 270.00153 * 6 5 4 8 8 H 1.07996 * 120.00253 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99431 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46901 * 89.99782 * 11 9 7 13 13 H 1.48492 * 109.47193 * 210.00130 * 11 9 7 14 14 H 1.48505 * 109.46994 * 330.00494 * 11 9 7 15 15 C 1.34777 * 120.00210 * 89.99876 * 5 4 3 16 16 O 1.21285 * 119.99743 * 359.97438 * 15 5 4 17 17 C 1.50703 * 120.00247 * 179.97438 * 15 5 4 18 18 C 1.50698 * 109.46947 * 179.97438 * 17 15 5 19 19 C 1.37966 * 120.07863 * 100.38652 * 18 17 15 20 20 C 1.38348 * 120.15436 * 179.97438 * 19 18 17 21 21 C 1.38396 * 120.29806 * 0.04755 * 20 19 18 22 22 C 1.37921 * 120.14969 * 359.97438 * 21 20 19 23 23 C 1.39611 * 120.07797 * 280.10867 * 18 17 15 24 24 C 1.47733 * 120.14583 * 0.02562 * 23 18 17 25 25 O 1.21464 * 120.00138 * 5.38482 * 24 23 18 26 26 O 1.34710 * 119.99912 * 185.38524 * 24 23 18 27 27 C 1.45196 * 116.99992 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47140 * 299.99678 * 1 2 3 29 29 H 1.08996 * 109.47230 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.46577 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46327 * 59.99846 * 3 2 1 32 32 H 1.09000 * 109.46845 * 300.00650 * 3 2 1 33 33 H 1.08996 * 109.47658 * 305.00406 * 4 3 2 34 34 H 1.09005 * 109.47339 * 184.99836 * 4 3 2 35 35 H 1.08999 * 109.47107 * 30.00007 * 6 5 4 36 36 H 1.09001 * 109.47788 * 149.99972 * 6 5 4 37 37 H 0.97008 * 119.99414 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46821 * 300.00148 * 17 15 5 39 39 H 1.08998 * 109.46894 * 60.00243 * 17 15 5 40 40 H 1.08002 * 119.92141 * 0.02562 * 19 18 17 41 41 H 1.07997 * 119.85035 * 180.02562 * 20 19 18 42 42 H 1.07995 * 119.91959 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.06917 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47346 * 60.00289 * 27 26 24 45 45 H 1.09007 * 109.47039 * 180.02562 * 27 26 24 46 46 H 1.08998 * 109.46937 * 299.99900 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.1063 -0.8923 -1.3405 7 6 5.5018 -1.2979 -0.9415 8 1 6.2203 -0.5459 -0.6507 9 6 5.8611 -2.6290 -0.9476 10 7 7.0788 -2.9829 -0.5989 11 14 4.6181 -3.9298 -1.4499 12 1 4.7033 -4.1563 -2.9150 13 1 4.9121 -5.1976 -0.7350 14 1 3.2506 -3.4692 -1.0990 15 6 4.2633 1.3332 -2.3200 16 8 4.1555 2.5389 -2.2461 17 6 4.7177 0.6948 -3.6073 18 6 4.9701 1.7656 -4.6372 19 6 6.2585 2.1846 -4.8976 20 6 6.4921 3.1671 -5.8431 21 6 5.4365 3.7370 -6.5333 22 6 4.1435 3.3278 -6.2826 23 6 3.9012 2.3318 -5.3343 24 6 2.5193 1.8842 -5.0648 25 8 2.3007 1.0940 -4.1687 26 8 1.5016 2.3525 -5.8131 27 6 0.1705 1.8698 -5.4915 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8508 0.5686 0.8426 34 1 3.9785 2.1767 0.0902 35 1 3.3859 -1.3630 -0.6715 36 1 3.9139 -1.2120 -2.3646 37 1 7.3318 -3.9194 -0.6036 38 1 5.6366 0.1358 -3.4310 39 1 3.9443 0.0176 -3.9698 40 1 7.0868 1.7439 -4.3626 41 1 7.5027 3.4912 -6.0433 42 1 5.6258 4.5038 -7.2698 43 1 3.3207 3.7731 -6.8222 44 1 -0.0745 2.1373 -4.4637 45 1 -0.5538 2.3237 -6.1679 46 1 0.1406 0.7859 -5.6019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611415516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:49 Heat of formation + Delta-G solvation = -128.668315 kcal Electronic energy + Delta-G solvation = -30493.640865 eV Core-core repulsion = 26349.314903 eV Total energy + Delta-G solvation = -4144.325962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67744 -39.24727 -38.46578 -37.32622 -36.31482 -34.84261 -32.69662 -32.36041 -31.43849 -30.10678 -28.02948 -27.55231 -27.04711 -25.79782 -23.85226 -22.69720 -22.38314 -21.59646 -20.64438 -18.33581 -17.74446 -16.96950 -16.84863 -16.64677 -16.22936 -15.98692 -15.66099 -15.54722 -15.20676 -14.97141 -14.59931 -14.44759 -14.10251 -13.70296 -13.48482 -13.27846 -13.02953 -12.78958 -12.51084 -12.28713 -12.16017 -12.03684 -11.96861 -11.68216 -11.60097 -11.48373 -11.35378 -10.95884 -10.89795 -10.74637 -10.70908 -10.43942 -10.13187 -9.92514 -9.52772 -9.39249 -9.09680 -8.93347 -8.65199 -8.54786 -7.58471 -6.12498 -4.12380 0.82941 1.43682 2.69121 2.74839 3.26874 3.34915 3.41361 3.55845 3.76969 4.07249 4.19630 4.38003 4.74783 4.87041 4.96236 5.05245 5.07628 5.14798 5.20289 5.37148 5.38664 5.42513 5.45556 5.52440 5.55363 5.66164 5.70222 5.75674 5.80087 5.81452 5.93749 6.08370 6.14948 6.21960 6.31650 6.40914 6.43913 6.50818 6.68591 6.73720 6.93318 7.01743 7.45688 7.51318 7.61343 7.88893 8.28562 8.54689 8.91717 9.09026 9.49013 11.00127 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.005074 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.971649 B = 5516.971875 C = 6926.042286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.580 5.580 6 C 0.212 3.788 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.895 5.895 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.260 1.260 15 C 0.545 3.455 16 O -0.578 6.578 17 C -0.113 4.113 18 C 0.015 3.985 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.065 4.065 23 C -0.116 4.116 24 C 0.505 3.495 25 O -0.486 6.486 26 O -0.361 6.361 27 C 0.039 3.961 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 10.778 -10.256 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.028 4.028 4 C 0.000 4.000 5 N -0.309 5.309 6 C 0.091 3.909 7 C -0.577 4.577 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.533 5.533 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.184 1.184 15 C 0.334 3.666 16 O -0.460 6.460 17 C -0.152 4.152 18 C 0.014 3.986 19 C -0.139 4.139 20 C -0.101 4.101 21 C -0.161 4.161 22 C -0.084 4.084 23 C -0.117 4.117 24 C 0.350 3.650 25 O -0.374 6.374 26 O -0.278 6.278 27 C -0.055 4.055 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.176 10.790 -9.892 17.828 hybrid contribution -0.955 -0.786 -0.078 1.239 sum -11.131 10.005 -9.969 17.983 Atomic orbital electron populations 1.22651 0.82302 1.02171 0.99155 1.88016 1.18584 1.27767 1.95209 1.23026 0.95413 0.84716 0.99638 1.21312 0.90861 0.99688 0.88120 1.47668 1.64210 1.08809 1.10261 1.19812 0.97855 0.75678 0.97590 1.21464 0.96150 0.93653 1.46424 0.90524 1.24837 0.95028 0.98269 0.94510 1.69905 1.18178 1.17373 1.47838 0.86961 0.82892 0.81618 0.79148 1.20001 1.21062 1.18384 1.19831 0.75893 0.86302 0.84554 1.90574 1.56142 1.14708 1.84555 1.20939 1.05340 0.97019 0.91947 1.19650 0.92022 0.94060 0.92838 1.21109 0.96198 0.97993 0.98596 1.21376 0.99315 0.94859 0.94532 1.21052 0.92375 1.01350 1.01352 1.21325 0.97557 0.94370 0.95107 1.18856 0.89227 1.01704 1.01907 1.21261 0.85903 0.78594 0.79264 1.90871 1.84757 1.32094 1.29680 1.86512 1.17083 1.66427 1.57758 1.23208 0.79885 1.00352 1.02066 0.94718 0.94705 0.90092 0.93374 0.93322 0.89441 0.89391 0.93669 0.95543 0.92540 0.86955 0.86506 0.84689 0.85449 0.85510 0.84912 0.92007 0.88321 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.38 -6.97 9.53 -35.23 -0.34 -7.31 16 3 C 0.05 0.87 6.28 37.15 0.23 1.10 16 4 C 0.12 2.43 5.81 -4.05 -0.02 2.41 16 5 N -0.58 -12.92 2.42 -175.06 -0.42 -13.34 16 6 C 0.21 5.10 3.85 -5.19 -0.02 5.08 16 7 C -0.54 -14.69 9.83 -34.44 -0.34 -15.03 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 11 Si 0.87 20.85 27.47 -169.99 -4.67 16.18 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 15 C 0.55 11.99 6.17 -10.98 -0.07 11.92 16 16 O -0.58 -13.43 15.53 5.55 0.09 -13.34 16 17 C -0.11 -2.25 3.68 -29.03 -0.11 -2.35 16 18 C 0.02 0.26 4.45 -104.21 -0.46 -0.20 16 19 C -0.12 -1.80 9.66 -39.64 -0.38 -2.19 16 20 C -0.08 -0.99 10.04 -39.48 -0.40 -1.39 16 21 C -0.14 -1.62 10.03 -39.64 -0.40 -2.01 16 22 C -0.07 -0.84 9.62 -39.17 -0.38 -1.22 16 23 C -0.12 -1.87 5.77 -104.98 -0.61 -2.48 16 24 C 0.50 8.48 7.82 34.61 0.27 8.75 16 25 O -0.49 -9.40 12.05 -19.24 -0.23 -9.63 16 26 O -0.36 -4.99 9.83 -40.52 -0.40 -5.38 16 27 C 0.04 0.41 10.56 101.05 1.07 1.48 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.72 8.07 -51.93 -0.42 1.30 16 34 H 0.09 1.67 7.42 -51.93 -0.39 1.28 16 35 H 0.05 1.12 6.17 -51.93 -0.32 0.80 16 36 H 0.03 0.64 5.87 -51.93 -0.30 0.33 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.11 2.26 7.86 -51.93 -0.41 1.85 16 39 H 0.12 2.36 5.36 -51.93 -0.28 2.08 16 40 H 0.14 1.90 8.03 -52.49 -0.42 1.48 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.43 7.63 -52.49 -0.40 1.03 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -34.14 385.62 -6.74 -40.88 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.75 Total: 4.36 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.59 Total: 7.49 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.35 Total: -39.05 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.88 Total: -35.67 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.14 -6.74 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611415516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.788 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds