Wall clock time and date at job start Tue Mar 31 2020 19:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99910 * 2 1 4 4 C 1.52993 * 109.47130 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46873 * 65.00429 * 4 3 2 6 6 C 1.46497 * 120.00215 * 269.99659 * 5 4 3 7 7 C 1.50701 * 109.47139 * 270.00153 * 6 5 4 8 8 H 1.07996 * 120.00253 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99431 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 120.00301 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46901 * 89.99782 * 11 9 7 13 13 H 1.48492 * 109.47193 * 210.00130 * 11 9 7 14 14 H 1.48505 * 109.46994 * 330.00494 * 11 9 7 15 15 C 1.34777 * 120.00210 * 89.99876 * 5 4 3 16 16 O 1.21285 * 119.99743 * 359.97438 * 15 5 4 17 17 C 1.50703 * 120.00247 * 179.97438 * 15 5 4 18 18 C 1.50698 * 109.46947 * 179.97438 * 17 15 5 19 19 C 1.37966 * 120.07863 * 100.38652 * 18 17 15 20 20 C 1.38348 * 120.15436 * 179.97438 * 19 18 17 21 21 C 1.38396 * 120.29806 * 0.04755 * 20 19 18 22 22 C 1.37921 * 120.14969 * 359.97438 * 21 20 19 23 23 C 1.39611 * 120.07797 * 280.10867 * 18 17 15 24 24 C 1.47733 * 120.14583 * 0.02562 * 23 18 17 25 25 O 1.21464 * 120.00138 * 5.38482 * 24 23 18 26 26 O 1.34710 * 119.99912 * 185.38524 * 24 23 18 27 27 C 1.45196 * 116.99992 * 180.02562 * 26 24 23 28 28 H 1.08995 * 109.47140 * 299.99678 * 1 2 3 29 29 H 1.08996 * 109.47230 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.46577 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46327 * 59.99846 * 3 2 1 32 32 H 1.09000 * 109.46845 * 300.00650 * 3 2 1 33 33 H 1.08996 * 109.47658 * 305.00406 * 4 3 2 34 34 H 1.09005 * 109.47339 * 184.99836 * 4 3 2 35 35 H 1.08999 * 109.47107 * 30.00007 * 6 5 4 36 36 H 1.09001 * 109.47788 * 149.99972 * 6 5 4 37 37 H 0.97008 * 119.99414 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.46821 * 300.00148 * 17 15 5 39 39 H 1.08998 * 109.46894 * 60.00243 * 17 15 5 40 40 H 1.08002 * 119.92141 * 0.02562 * 19 18 17 41 41 H 1.07997 * 119.85035 * 180.02562 * 20 19 18 42 42 H 1.07995 * 119.91959 * 179.97438 * 21 20 19 43 43 H 1.08001 * 120.06917 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47346 * 60.00289 * 27 26 24 45 45 H 1.09007 * 109.47039 * 180.02562 * 27 26 24 46 46 H 1.08998 * 109.46937 * 299.99900 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.1063 -0.8923 -1.3405 7 6 5.5018 -1.2979 -0.9415 8 1 6.2203 -0.5459 -0.6507 9 6 5.8611 -2.6290 -0.9476 10 7 7.0788 -2.9829 -0.5989 11 14 4.6181 -3.9298 -1.4499 12 1 4.7033 -4.1563 -2.9150 13 1 4.9121 -5.1976 -0.7350 14 1 3.2506 -3.4692 -1.0990 15 6 4.2633 1.3332 -2.3200 16 8 4.1555 2.5389 -2.2461 17 6 4.7177 0.6948 -3.6073 18 6 4.9701 1.7656 -4.6372 19 6 6.2585 2.1846 -4.8976 20 6 6.4921 3.1671 -5.8431 21 6 5.4365 3.7370 -6.5333 22 6 4.1435 3.3278 -6.2826 23 6 3.9012 2.3318 -5.3343 24 6 2.5193 1.8842 -5.0648 25 8 2.3007 1.0940 -4.1687 26 8 1.5016 2.3525 -5.8131 27 6 0.1705 1.8698 -5.4915 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8508 0.5686 0.8426 34 1 3.9785 2.1767 0.0902 35 1 3.3859 -1.3630 -0.6715 36 1 3.9139 -1.2120 -2.3646 37 1 7.3318 -3.9194 -0.6036 38 1 5.6366 0.1358 -3.4310 39 1 3.9443 0.0176 -3.9698 40 1 7.0868 1.7439 -4.3626 41 1 7.5027 3.4912 -6.0433 42 1 5.6258 4.5038 -7.2698 43 1 3.3207 3.7731 -6.8222 44 1 -0.0745 2.1373 -4.4637 45 1 -0.5538 2.3237 -6.1679 46 1 0.1406 0.7859 -5.6019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611415516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:48 Heat of formation + Delta-G solvation = -150.134198 kcal Electronic energy + Delta-G solvation = -30494.571696 eV Core-core repulsion = 26349.314903 eV Total energy + Delta-G solvation = -4145.256793 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91937 -40.76331 -39.66894 -38.70281 -37.51151 -36.64681 -34.60506 -33.84692 -32.50777 -31.66476 -29.59269 -28.93088 -28.25101 -27.06234 -24.96462 -24.40706 -24.06562 -22.82205 -21.80567 -19.98331 -19.09492 -18.90862 -18.22488 -18.01101 -17.49714 -17.39693 -17.06000 -16.89839 -16.53290 -16.29865 -15.99836 -15.82371 -15.56927 -15.14828 -14.89340 -14.50925 -14.39088 -14.26152 -13.99255 -13.83010 -13.54538 -13.41975 -13.24066 -13.10444 -12.86887 -12.84710 -12.71677 -12.66022 -12.50854 -12.10637 -12.04580 -11.96202 -11.82217 -11.69128 -11.22655 -10.87269 -10.78121 -10.59619 -9.99854 -9.76319 -9.40206 -8.31258 -6.36646 -0.28680 0.36692 1.35801 1.37953 1.50186 1.51126 1.68094 1.84395 2.28906 2.33600 2.82373 2.87523 3.03107 3.65715 3.68942 3.87131 3.92535 4.08374 4.12389 4.20964 4.28130 4.28492 4.31240 4.34156 4.46205 4.47764 4.50179 4.58261 4.60044 4.63849 4.66098 4.75767 4.78242 4.85076 4.88098 4.99774 5.04973 5.25757 5.30540 5.45629 5.47178 5.54222 5.71506 5.92867 6.17550 6.24135 6.62531 6.69508 6.69905 7.25014 7.37332 8.84707 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.005074 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.971649 B = 5516.971875 C = 6926.042286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.062 3.938 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.230 3.770 7 C -0.538 4.538 8 H 0.035 0.965 9 C 0.027 3.973 10 N -0.937 5.937 11 Si 0.932 3.068 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.250 1.250 15 C 0.542 3.458 16 O -0.592 6.592 17 C -0.104 4.104 18 C -0.017 4.017 19 C -0.140 4.140 20 C -0.073 4.073 21 C -0.129 4.129 22 C -0.061 4.061 23 C -0.140 4.140 24 C 0.501 3.499 25 O -0.523 6.523 26 O -0.355 6.355 27 C 0.032 3.968 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.029 0.971 37 H 0.269 0.731 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.163 0.837 42 H 0.172 0.828 43 H 0.158 0.842 44 H 0.052 0.948 45 H 0.140 0.860 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.837 12.055 -12.273 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C -0.015 4.015 4 C -0.007 4.007 5 N -0.318 5.318 6 C 0.108 3.892 7 C -0.577 4.577 8 H 0.054 0.946 9 C -0.173 4.173 10 N -0.577 5.577 11 Si 0.755 3.245 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.173 1.173 15 C 0.332 3.668 16 O -0.475 6.475 17 C -0.144 4.144 18 C -0.018 4.018 19 C -0.158 4.158 20 C -0.091 4.091 21 C -0.146 4.146 22 C -0.079 4.079 23 C -0.141 4.141 24 C 0.348 3.652 25 O -0.414 6.414 26 O -0.272 6.272 27 C -0.061 4.061 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.175 0.825 44 H 0.071 0.929 45 H 0.158 0.842 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.797 12.095 -11.920 20.677 hybrid contribution -0.439 -1.052 0.523 1.254 sum -12.237 11.042 -11.397 20.039 Atomic orbital electron populations 1.22866 0.79926 1.03449 1.00472 1.87952 1.21254 1.28179 1.95459 1.22847 0.93453 0.84762 1.00454 1.21486 0.92955 0.99363 0.86895 1.47749 1.64527 1.08164 1.11393 1.19465 0.95515 0.76957 0.97248 1.21531 0.96930 0.93044 1.46162 0.94623 1.25633 0.96858 1.00458 0.94330 1.70032 1.20263 1.18164 1.49245 0.85938 0.80576 0.78648 0.79365 1.18759 1.20363 1.17337 1.20212 0.75317 0.86193 0.85085 1.90530 1.56823 1.15263 1.84924 1.20773 1.03803 0.97845 0.91934 1.19588 0.93702 0.94887 0.93585 1.21245 0.95159 0.99360 0.99993 1.21795 1.01522 0.93024 0.92732 1.21577 0.91127 1.01017 1.00920 1.21680 0.99359 0.92982 0.93905 1.19025 0.88560 1.03193 1.03304 1.21553 0.86813 0.77978 0.78851 1.90841 1.85371 1.33859 1.31352 1.86498 1.17764 1.65996 1.56902 1.23524 0.79011 1.00741 1.02799 0.92267 0.94432 0.88925 0.89932 0.94850 0.90007 0.89218 0.93937 0.95347 0.92193 0.88696 0.87428 0.85224 0.81919 0.81095 0.82477 0.92912 0.84183 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -14.90 9.53 -148.98 -1.42 -16.32 16 3 C 0.06 2.16 6.28 71.98 0.45 2.61 16 4 C 0.12 4.68 5.81 86.38 0.50 5.18 16 5 N -0.59 -27.33 2.42 -826.16 -2.00 -29.33 16 6 C 0.23 11.44 3.85 85.63 0.33 11.77 16 7 C -0.54 -30.66 9.83 25.60 0.25 -30.41 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C 0.03 1.51 5.47 84.66 0.46 1.97 16 10 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 11 Si 0.93 43.38 27.47 68.60 1.88 45.27 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 15 C 0.54 24.95 6.17 87.66 0.54 25.49 16 16 O -0.59 -28.50 15.53 -3.05 -0.05 -28.55 16 17 C -0.10 -4.38 3.68 29.10 0.11 -4.27 16 18 C -0.02 -0.60 4.45 -19.60 -0.09 -0.69 16 19 C -0.14 -4.17 9.66 22.23 0.21 -3.95 16 20 C -0.07 -1.55 10.04 22.33 0.22 -1.33 16 21 C -0.13 -2.39 10.03 22.23 0.22 -2.17 16 22 C -0.06 -1.43 9.62 22.53 0.22 -1.21 16 23 C -0.14 -4.48 5.77 -20.10 -0.12 -4.59 16 24 C 0.50 16.95 7.82 70.33 0.55 17.50 16 25 O -0.52 -20.92 12.05 19.95 0.24 -20.68 16 26 O -0.36 -9.42 9.83 -56.20 -0.55 -9.98 16 27 C 0.03 0.65 10.56 113.37 1.20 1.84 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 3.33 8.07 -2.39 -0.02 3.31 16 34 H 0.09 3.52 7.42 -2.38 -0.02 3.50 16 35 H 0.04 2.14 6.17 -2.39 -0.01 2.13 16 36 H 0.03 1.41 5.87 -2.39 -0.01 1.39 16 37 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 38 H 0.09 4.16 7.86 -2.39 -0.02 4.14 16 39 H 0.11 4.63 5.36 -2.39 -0.01 4.62 16 40 H 0.13 3.84 8.03 -2.91 -0.02 3.82 16 41 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 42 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.16 2.81 7.63 -2.91 -0.02 2.79 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -77.59 385.62 5.65 -71.94 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.93 Total: 24.70 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 6.32 Total: 19.76 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.70 Total: -86.14 kcal Atomic # 8 Polarization: -73.75 SS G_CDS: -1.78 Total: -75.53 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Total: -77.59 5.65 -71.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611415516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.195 kcal (2) G-P(sol) polarization free energy of solvation -77.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds