Wall clock time and date at job start Tue Mar 31 2020 19:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53009 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47238 * 64.99772 * 4 3 2 6 6 C 1.46496 * 120.00129 * 270.00499 * 5 4 3 7 7 C 1.50699 * 109.46959 * 269.99625 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46976 * 120.00041 * 11 9 7 14 14 H 1.48499 * 109.47229 * 240.00395 * 11 9 7 15 15 C 1.34777 * 119.99525 * 90.00006 * 5 4 3 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 5 4 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 5 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 15 20 20 C 1.38280 * 119.98334 * 264.72125 * 19 18 17 21 21 C 1.38209 * 120.14221 * 179.67977 * 20 19 18 22 22 C 1.38278 * 120.14248 * 0.65239 * 21 20 19 23 23 C 1.38506 * 120.03007 * 359.63581 * 22 21 20 24 24 C 1.38499 * 119.98598 * 85.00068 * 19 18 17 25 25 O 1.36497 * 131.54273 * 0.02562 * 24 19 18 26 26 C 1.43982 * 105.48759 * 162.68458 * 25 24 19 27 27 O 1.36495 * 131.54048 * 180.02562 * 23 22 21 28 28 H 1.08994 * 109.46962 * 299.99814 * 1 2 3 29 29 H 1.09005 * 109.46845 * 59.99625 * 1 2 3 30 30 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47641 * 60.00312 * 3 2 1 32 32 H 1.08997 * 109.47748 * 300.00028 * 3 2 1 33 33 H 1.09000 * 109.46757 * 305.00209 * 4 3 2 34 34 H 1.09001 * 109.46821 * 185.00072 * 4 3 2 35 35 H 1.08995 * 109.47364 * 30.00213 * 6 5 4 36 36 H 1.09002 * 109.47090 * 149.99764 * 6 5 4 37 37 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 38 38 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 39 39 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 40 40 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 41 41 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 42 42 H 1.08006 * 119.92731 * 0.02562 * 20 19 18 43 43 H 1.08004 * 119.92884 * 180.29123 * 21 20 19 44 44 H 1.08003 * 119.98674 * 179.65357 * 22 21 20 45 45 H 1.09006 * 110.56829 * 268.56219 * 26 25 24 46 46 H 1.08997 * 110.69916 * 145.75739 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5460 -0.6537 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3058 11 14 7.5902 -3.1320 -0.4579 12 1 8.3757 -1.9222 -0.1048 13 1 7.5258 -4.0396 0.7157 14 1 8.2442 -3.8339 -1.5914 15 6 4.2615 1.3338 -2.3217 16 8 4.1547 2.5396 -2.2471 17 6 4.7203 0.6962 -3.6078 18 6 4.9819 1.7840 -4.6515 19 6 5.4401 1.1464 -5.9377 20 6 6.7912 1.0313 -6.2091 21 6 7.2151 0.4411 -7.3847 22 6 6.2900 -0.0247 -8.3008 23 6 4.9351 0.0926 -8.0384 24 6 4.5078 0.6811 -6.8502 25 8 3.1430 0.6785 -6.8284 26 6 2.7372 0.4549 -8.1916 27 8 3.8378 -0.2787 -8.7604 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3629 -0.6735 36 1 3.9120 -1.2114 -2.3668 37 1 5.2380 -4.4809 -1.3109 38 1 5.6384 0.1364 -3.4286 39 1 3.9479 0.0198 -3.9739 40 1 4.0640 2.3438 -4.8306 41 1 5.7543 2.4604 -4.2854 42 1 7.5167 1.3984 -5.4982 43 1 8.2713 0.3488 -7.5910 44 1 6.6241 -0.4804 -9.2212 45 1 2.6001 1.4034 -8.7109 46 1 1.8224 -0.1367 -8.2291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613772609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:52 Heat of formation + Delta-G solvation = -122.323382 kcal Electronic energy + Delta-G solvation = -29455.578305 eV Core-core repulsion = 25311.527480 eV Total energy + Delta-G solvation = -4144.050825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12961 -39.23496 -38.02498 -37.33610 -36.30100 -34.85866 -33.50904 -32.53607 -30.29380 -29.90790 -28.87082 -26.97222 -25.96966 -25.82198 -24.53319 -22.87744 -22.81923 -22.25507 -20.96204 -18.18877 -18.02042 -17.57336 -17.15402 -16.60776 -16.46459 -16.19565 -15.89079 -15.52478 -15.02253 -14.80546 -14.57561 -14.38837 -14.30722 -14.17452 -13.74102 -13.37754 -13.04818 -12.93343 -12.77305 -12.53927 -12.25473 -12.03924 -11.92016 -11.73230 -11.57960 -11.42722 -11.30664 -10.93543 -10.85488 -10.84500 -10.82714 -10.54305 -10.44437 -10.07742 -9.64280 -9.36218 -9.01796 -8.56281 -8.45522 -8.03691 -7.63286 -6.08892 -4.15882 1.20646 1.24722 2.79071 3.26167 3.34374 3.37521 3.46155 3.48441 3.59790 4.00755 4.20246 4.40324 4.49735 4.61297 4.81231 5.00178 5.11430 5.15468 5.24079 5.28738 5.41800 5.44817 5.50664 5.58758 5.61224 5.62983 5.68801 5.74560 5.78718 5.88347 6.01659 6.09414 6.17432 6.21910 6.30290 6.38204 6.41107 6.47582 6.60375 6.67664 6.93676 7.17113 7.39989 7.52151 7.66127 7.87530 8.17515 8.44632 8.88252 9.09033 9.50995 10.97827 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.004143 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.710760 B = 6757.268401 C = 8511.236521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.587 5.587 6 C 0.239 3.761 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.517 3.483 16 O -0.584 6.584 17 C -0.127 4.127 18 C -0.061 4.061 19 C -0.053 4.053 20 C -0.105 4.105 21 C -0.108 4.108 22 C -0.109 4.109 23 C 0.029 3.971 24 C 0.036 3.964 25 O -0.302 6.302 26 C 0.212 3.788 27 O -0.312 6.312 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.263 0.737 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 8.367 -10.226 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.119 3.881 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.306 3.694 16 O -0.467 6.467 17 C -0.166 4.166 18 C -0.098 4.098 19 C -0.054 4.054 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.015 4.015 24 C -0.009 4.009 25 O -0.218 6.218 26 C 0.100 3.900 27 O -0.228 6.228 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.098 0.902 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.194 8.457 -10.195 13.626 hybrid contribution 0.368 -0.454 0.179 0.611 sum -2.826 8.003 -10.017 13.129 Atomic orbital electron populations 1.22676 0.82244 1.02362 0.99113 1.88062 1.18601 1.27471 1.95187 1.23027 0.95417 0.84879 0.99648 1.21314 0.90966 0.99528 0.88432 1.48169 1.63462 1.10028 1.09989 1.19480 0.97235 0.72715 0.98648 1.21557 0.97354 0.92371 1.46252 0.92208 1.24930 0.97399 0.96396 0.95064 1.69950 1.34226 1.01084 1.47474 0.86515 0.84481 0.78638 0.78268 1.19703 1.20939 1.20884 1.20490 0.76666 0.86540 0.85694 1.90566 1.56406 1.14830 1.84855 1.21550 1.04423 0.98450 0.92200 1.20305 1.02589 0.97012 0.89928 1.19086 0.91126 0.99292 0.95876 1.20939 0.93877 0.99906 0.97568 1.20892 0.99329 0.98854 0.93581 1.20014 0.87840 1.03605 1.01337 1.19793 0.89644 1.00465 0.91631 1.19610 0.83022 1.02215 0.96005 1.87413 1.17194 1.88984 1.28194 1.25582 0.91049 0.96210 0.77110 1.87333 1.15641 1.63988 1.55884 0.94760 0.94691 0.89893 0.93339 0.93443 0.89588 0.89557 0.93314 0.94738 0.92715 0.87659 0.89302 0.90518 0.90024 0.84293 0.84567 0.85087 0.90234 0.85338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.92 9.53 -35.23 -0.34 -7.25 16 3 C 0.05 0.81 6.28 37.16 0.23 1.05 16 4 C 0.12 2.30 5.81 -4.04 -0.02 2.28 16 5 N -0.59 -12.75 2.42 -175.06 -0.42 -13.17 16 6 C 0.24 5.91 4.78 -5.20 -0.02 5.88 16 7 C -0.54 -14.20 9.26 -34.44 -0.32 -14.52 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 11 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.52 10.95 7.67 -10.98 -0.08 10.86 16 16 O -0.58 -12.94 15.56 5.55 0.09 -12.85 16 17 C -0.13 -2.42 4.23 -27.88 -0.12 -2.54 16 18 C -0.06 -0.99 4.63 -27.88 -0.13 -1.12 16 19 C -0.05 -0.80 5.14 -104.51 -0.54 -1.34 16 20 C -0.10 -1.35 9.67 -39.58 -0.38 -1.73 16 21 C -0.11 -1.23 10.04 -39.58 -0.40 -1.63 16 22 C -0.11 -1.34 10.06 -39.47 -0.40 -1.73 16 23 C 0.03 0.42 7.15 -39.08 -0.28 0.14 16 24 C 0.04 0.56 6.83 -39.09 -0.27 0.29 16 25 O -0.30 -4.61 11.39 -45.68 -0.52 -5.13 16 26 C 0.21 2.38 8.89 101.05 0.90 3.27 16 27 O -0.31 -4.28 11.40 -45.67 -0.52 -4.80 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 34 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 35 H 0.05 1.31 7.11 -51.93 -0.37 0.94 16 36 H 0.03 0.90 6.45 -51.93 -0.33 0.56 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.11 2.11 7.98 -51.92 -0.41 1.69 16 39 H 0.09 1.77 7.41 -51.93 -0.38 1.39 16 40 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 42 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 389.19 15.07 5.86 5.86 Total: -1.00 -32.39 389.19 -7.86 -40.25 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.92 Total: 3.37 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.81 Total: 2.38 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.31 Total: -37.62 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.29 Total: -30.04 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.39 -7.86 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.075 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds