Wall clock time and date at job start Tue Mar 31 2020 19:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99940 * 2 1 4 4 C 1.53009 * 109.47169 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47238 * 64.99772 * 4 3 2 6 6 C 1.46496 * 120.00129 * 270.00499 * 5 4 3 7 7 C 1.50699 * 109.46959 * 269.99625 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00072 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00141 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47030 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46976 * 120.00041 * 11 9 7 14 14 H 1.48499 * 109.47229 * 240.00395 * 11 9 7 15 15 C 1.34777 * 119.99525 * 90.00006 * 5 4 3 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 5 4 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 5 4 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 5 19 19 C 1.50700 * 109.47208 * 180.02562 * 18 17 15 20 20 C 1.38280 * 119.98334 * 264.72125 * 19 18 17 21 21 C 1.38209 * 120.14221 * 179.67977 * 20 19 18 22 22 C 1.38278 * 120.14248 * 0.65239 * 21 20 19 23 23 C 1.38506 * 120.03007 * 359.63581 * 22 21 20 24 24 C 1.38499 * 119.98598 * 85.00068 * 19 18 17 25 25 O 1.36497 * 131.54273 * 0.02562 * 24 19 18 26 26 C 1.43982 * 105.48759 * 162.68458 * 25 24 19 27 27 O 1.36495 * 131.54048 * 180.02562 * 23 22 21 28 28 H 1.08994 * 109.46962 * 299.99814 * 1 2 3 29 29 H 1.09005 * 109.46845 * 59.99625 * 1 2 3 30 30 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47641 * 60.00312 * 3 2 1 32 32 H 1.08997 * 109.47748 * 300.00028 * 3 2 1 33 33 H 1.09000 * 109.46757 * 305.00209 * 4 3 2 34 34 H 1.09001 * 109.46821 * 185.00072 * 4 3 2 35 35 H 1.08995 * 109.47364 * 30.00213 * 6 5 4 36 36 H 1.09002 * 109.47090 * 149.99764 * 6 5 4 37 37 H 0.96997 * 119.99946 * 179.97438 * 10 9 7 38 38 H 1.09009 * 109.47352 * 300.27556 * 17 15 5 39 39 H 1.08998 * 109.47585 * 60.27844 * 17 15 5 40 40 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 41 41 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 42 42 H 1.08006 * 119.92731 * 0.02562 * 20 19 18 43 43 H 1.08004 * 119.92884 * 180.29123 * 21 20 19 44 44 H 1.08003 * 119.98674 * 179.65357 * 22 21 20 45 45 H 1.09006 * 110.56829 * 268.56219 * 26 25 24 46 46 H 1.08997 * 110.69916 * 145.75739 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2978 -0.9449 8 1 6.2195 -0.5460 -0.6537 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3058 11 14 7.5902 -3.1320 -0.4579 12 1 8.3757 -1.9222 -0.1048 13 1 7.5258 -4.0396 0.7157 14 1 8.2442 -3.8339 -1.5914 15 6 4.2615 1.3338 -2.3217 16 8 4.1547 2.5396 -2.2471 17 6 4.7203 0.6962 -3.6078 18 6 4.9819 1.7840 -4.6515 19 6 5.4401 1.1464 -5.9377 20 6 6.7912 1.0313 -6.2091 21 6 7.2151 0.4411 -7.3847 22 6 6.2900 -0.0247 -8.3008 23 6 4.9351 0.0926 -8.0384 24 6 4.5078 0.6811 -6.8502 25 8 3.1430 0.6785 -6.8284 26 6 2.7372 0.4549 -8.1916 27 8 3.8378 -0.2787 -8.7604 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 3.3852 -1.3629 -0.6735 36 1 3.9120 -1.2114 -2.3668 37 1 5.2380 -4.4809 -1.3109 38 1 5.6384 0.1364 -3.4286 39 1 3.9479 0.0198 -3.9739 40 1 4.0640 2.3438 -4.8306 41 1 5.7543 2.4604 -4.2854 42 1 7.5167 1.3984 -5.4982 43 1 8.2713 0.3488 -7.5910 44 1 6.6241 -0.4804 -9.2212 45 1 2.6001 1.4034 -8.7109 46 1 1.8224 -0.1367 -8.2291 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613772609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:51 Heat of formation + Delta-G solvation = -141.801700 kcal Electronic energy + Delta-G solvation = -29456.422948 eV Core-core repulsion = 25311.527480 eV Total energy + Delta-G solvation = -4144.895468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.12880 -40.90366 -39.09787 -38.68609 -37.34282 -36.63343 -34.85650 -34.48726 -31.74910 -30.88296 -30.22474 -28.84842 -27.22142 -26.74241 -25.88504 -24.79161 -23.88199 -23.62518 -22.17846 -19.89456 -19.01964 -18.63705 -18.57107 -18.29119 -17.85879 -17.47536 -17.20796 -16.95874 -16.66469 -16.24342 -16.15285 -15.75586 -15.45291 -15.27769 -14.91249 -14.72078 -14.34533 -14.18777 -14.01661 -13.90513 -13.71234 -13.59660 -13.35898 -13.11680 -12.99467 -12.92027 -12.75225 -12.69474 -12.56498 -12.13430 -11.98238 -11.95387 -11.90250 -11.77792 -11.62709 -10.82519 -10.63173 -10.47540 -9.64766 -9.43747 -9.05200 -8.16085 -6.31410 0.19697 0.21250 1.42589 1.44506 1.55976 1.74858 1.83916 2.29485 2.45956 2.56178 2.63860 2.92886 3.14120 3.40864 3.74838 3.80822 3.92799 4.07489 4.13892 4.15696 4.21535 4.23528 4.29979 4.31642 4.37979 4.39028 4.50579 4.53160 4.54352 4.61414 4.72417 4.81907 4.87279 4.89231 5.00523 5.06534 5.15603 5.21991 5.33520 5.39604 5.51589 5.54595 5.68515 5.87166 6.10375 6.16358 6.27150 6.60430 6.84771 7.30473 7.42896 8.90096 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008407 B = 0.004143 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3329.710760 B = 6757.268401 C = 8511.236521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.055 3.945 4 C 0.115 3.885 5 N -0.592 5.592 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.018 3.982 10 N -0.922 5.922 11 Si 0.959 3.041 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.277 1.277 15 C 0.513 3.487 16 O -0.592 6.592 17 C -0.116 4.116 18 C -0.046 4.046 19 C -0.076 4.076 20 C -0.110 4.110 21 C -0.099 4.099 22 C -0.108 4.108 23 C 0.011 3.989 24 C 0.011 3.989 25 O -0.330 6.330 26 C 0.204 3.796 27 O -0.324 6.324 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.025 0.975 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.157 0.843 43 H 0.174 0.826 44 H 0.158 0.842 45 H 0.105 0.895 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 8.752 -10.699 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.022 4.022 4 C -0.008 4.008 5 N -0.321 5.321 6 C 0.140 3.860 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.182 4.182 10 N -0.562 5.562 11 Si 0.784 3.216 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.202 1.202 15 C 0.303 3.697 16 O -0.476 6.476 17 C -0.156 4.156 18 C -0.084 4.084 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.033 4.033 24 C -0.033 4.033 25 O -0.247 6.247 26 C 0.093 3.907 27 O -0.241 6.241 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.174 0.826 43 H 0.192 0.808 44 H 0.175 0.825 45 H 0.123 0.877 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.860 8.865 -10.667 13.994 hybrid contribution -0.124 -0.563 0.305 0.653 sum -1.984 8.302 -10.362 13.425 Atomic orbital electron populations 1.22873 0.80013 1.03323 1.00626 1.88008 1.21185 1.28380 1.95476 1.22945 0.93736 0.84696 1.00832 1.21512 0.92831 0.99503 0.86972 1.48158 1.63757 1.08931 1.11285 1.18995 0.95988 0.74336 0.96681 1.21732 0.97835 0.92563 1.46131 0.92567 1.25717 1.01238 0.96334 0.94879 1.70061 1.36238 1.01479 1.48397 0.85484 0.79747 0.78334 0.77985 1.19020 1.20575 1.20240 1.20793 0.76353 0.86458 0.86080 1.90547 1.56872 1.15066 1.85089 1.21454 1.03114 0.98922 0.92115 1.20123 1.02266 0.96009 0.90016 1.19138 0.92326 1.00777 0.95395 1.21254 0.93145 0.99695 0.98649 1.21336 1.01055 0.96959 0.92293 1.20484 0.87047 1.02674 1.02409 1.20134 0.90657 1.01004 0.91502 1.19877 0.83239 1.03248 0.96924 1.87356 1.17476 1.89314 1.30561 1.26052 0.91086 0.97861 0.75681 1.87291 1.16054 1.64645 1.56071 0.92202 0.94109 0.89335 0.89835 0.94335 0.90159 0.88598 0.95676 0.96654 0.92494 0.88704 0.90854 0.91734 0.89322 0.82583 0.80813 0.82476 0.87736 0.82839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.41 -15.23 9.53 -148.98 -1.42 -16.65 16 3 C 0.06 1.84 6.28 71.99 0.45 2.30 16 4 C 0.11 4.37 5.81 86.38 0.50 4.88 16 5 N -0.59 -26.34 2.42 -826.16 -2.00 -28.34 16 6 C 0.26 13.36 4.78 85.63 0.41 13.77 16 7 C -0.54 -29.21 9.26 25.60 0.24 -28.97 16 8 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 9 C 0.02 0.99 5.46 84.65 0.46 1.45 16 10 N -0.92 -52.97 13.29 21.45 0.28 -52.69 16 11 Si 0.96 42.47 29.54 68.60 2.03 44.50 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 C 0.51 22.25 7.67 87.66 0.67 22.92 16 16 O -0.59 -26.44 15.56 -3.04 -0.05 -26.48 16 17 C -0.12 -4.62 4.23 29.85 0.13 -4.49 16 18 C -0.05 -1.56 4.63 29.85 0.14 -1.42 16 19 C -0.08 -2.30 5.14 -19.79 -0.10 -2.40 16 20 C -0.11 -2.67 9.67 22.27 0.22 -2.46 16 21 C -0.10 -1.98 10.04 22.27 0.22 -1.76 16 22 C -0.11 -2.42 10.06 22.34 0.22 -2.19 16 23 C 0.01 0.32 7.15 22.59 0.16 0.48 16 24 C 0.01 0.36 6.83 22.59 0.15 0.51 16 25 O -0.33 -10.43 11.39 -76.02 -0.87 -11.29 16 26 C 0.20 4.51 8.89 113.37 1.01 5.52 16 27 O -0.32 -8.74 11.40 -75.99 -0.87 -9.61 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 3.11 8.07 -2.39 -0.02 3.10 16 34 H 0.10 3.43 7.42 -2.39 -0.02 3.41 16 35 H 0.03 1.40 7.11 -2.39 -0.02 1.39 16 36 H 0.02 0.84 6.45 -2.39 -0.02 0.83 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.09 3.94 7.98 -2.38 -0.02 3.92 16 39 H 0.07 3.12 7.41 -2.39 -0.02 3.10 16 40 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 41 H 0.09 2.78 8.01 -2.39 -0.02 2.76 16 42 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.15 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -70.74 389.19 4.22 -66.51 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.98 Total: 23.93 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.13 Total: 10.12 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.71 Total: -81.03 kcal Atomic # 8 Polarization: -60.84 SS G_CDS: -3.20 Total: -64.03 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -70.74 4.22 -66.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613772609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.288 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds