Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00245 * 2 1 4 4 C 1.52998 * 109.47134 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46833 * 64.99509 * 4 3 2 6 6 C 1.46507 * 119.99754 * 92.62374 * 5 4 3 7 7 C 1.50696 * 109.47308 * 74.23726 * 6 5 4 8 8 H 1.08004 * 120.00279 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99712 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00309 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47461 * 89.99691 * 11 9 7 13 13 H 1.48503 * 109.47110 * 210.00231 * 11 9 7 14 14 H 1.48507 * 109.46953 * 329.99776 * 11 9 7 15 15 C 1.34772 * 120.00477 * 272.61148 * 5 4 3 16 16 O 1.21556 * 119.99566 * 3.07940 * 15 5 4 17 17 C 1.47848 * 120.00567 * 183.07256 * 15 5 4 18 18 C 1.39590 * 120.13932 * 27.96064 * 17 15 5 19 19 C 1.37936 * 119.85394 * 179.74761 * 18 17 15 20 20 C 1.38383 * 120.14132 * 0.53301 * 19 18 17 21 21 C 1.38336 * 120.29212 * 359.74408 * 20 19 18 22 22 C 1.50700 * 119.92782 * 180.02562 * 21 20 19 23 23 C 1.50695 * 109.47475 * 269.97955 * 22 21 20 24 24 O 1.20835 * 119.99471 * 359.97438 * 23 22 21 25 25 O 1.34221 * 120.00566 * 180.02562 * 23 22 21 26 26 C 1.45199 * 117.00170 * 180.02562 * 25 23 22 27 27 C 1.37973 * 120.14688 * 359.97438 * 21 20 19 28 28 H 1.09007 * 109.46369 * 60.00244 * 1 2 3 29 29 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47185 * 300.00680 * 1 2 3 31 31 H 1.08998 * 109.47346 * 59.99231 * 3 2 1 32 32 H 1.09000 * 109.46547 * 299.99770 * 3 2 1 33 33 H 1.08998 * 109.47066 * 305.00288 * 4 3 2 34 34 H 1.08996 * 109.47116 * 184.99915 * 4 3 2 35 35 H 1.09001 * 109.46602 * 314.23474 * 6 5 4 36 36 H 1.08998 * 109.46726 * 194.23738 * 6 5 4 37 37 H 0.96999 * 119.99790 * 179.97438 * 10 9 7 38 38 H 1.08006 * 120.07757 * 0.02562 * 18 17 15 39 39 H 1.07998 * 119.93143 * 180.25416 * 19 18 17 40 40 H 1.08001 * 119.85439 * 179.76597 * 20 19 18 41 41 H 1.09000 * 109.47298 * 29.97745 * 22 21 20 42 42 H 1.09002 * 109.47528 * 149.97563 * 22 21 20 43 43 H 1.09000 * 109.47037 * 299.98996 * 26 25 23 44 44 H 1.08995 * 109.47745 * 59.99470 * 26 25 23 45 45 H 1.09001 * 109.47019 * 179.97438 * 26 25 23 46 46 H 1.07999 * 120.07777 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.3434 1.4022 -2.3949 7 6 5.6851 2.0397 -2.1410 8 1 6.2118 1.8406 -1.2194 9 6 6.2397 2.8779 -3.0848 10 7 5.5982 3.1207 -4.2068 11 14 7.9032 3.6676 -2.7704 12 1 8.9772 2.7820 -3.2872 13 1 7.9672 4.9796 -3.4631 14 1 8.0874 3.8691 -1.3106 15 6 4.0454 -0.7786 -1.3497 16 8 3.6882 -1.4755 -0.4199 17 6 4.5549 -1.4036 -2.5889 18 6 5.4713 -0.7224 -3.3918 19 6 5.9469 -1.3132 -4.5440 20 6 5.5090 -2.5738 -4.9102 21 6 4.5966 -3.2519 -4.1219 22 6 4.1257 -4.6246 -4.5282 23 6 2.9009 -4.4989 -5.3970 24 8 2.4557 -3.4065 -5.6591 25 8 2.3040 -5.6002 -5.8790 26 6 1.1291 -5.4034 -6.7093 27 6 4.1175 -2.6746 -2.9639 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0902 35 1 3.5917 2.1796 -2.5313 36 1 4.3975 0.7874 -3.2933 37 1 5.9882 3.7107 -4.8706 38 1 5.8108 0.2632 -3.1093 39 1 6.6590 -0.7890 -5.1640 40 1 5.8815 -3.0305 -5.8153 41 1 4.9154 -5.1297 -5.0844 42 1 3.8815 -5.2034 -3.6374 43 1 0.3625 -4.8819 -6.1363 44 1 1.3969 -4.8093 -7.5830 45 1 0.7462 -6.3715 -7.0322 46 1 3.4055 -3.2052 -2.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614618320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = -119.567278 kcal Electronic energy + Delta-G solvation = -29614.441116 eV Core-core repulsion = 25470.509805 eV Total energy + Delta-G solvation = -4143.931311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53176 -39.65550 -38.04597 -37.09887 -36.37378 -35.13151 -32.96397 -32.61101 -30.78888 -29.62918 -28.50311 -27.27181 -26.66475 -25.95173 -23.59704 -23.09089 -22.01285 -21.55162 -20.55949 -18.57167 -17.62089 -16.76865 -16.61650 -16.55455 -16.24748 -16.08252 -15.83246 -15.51786 -15.04579 -14.83063 -14.51845 -14.25637 -13.78336 -13.70024 -13.56407 -13.30325 -12.94168 -12.76207 -12.40805 -12.18445 -12.17149 -12.07134 -11.96033 -11.57879 -11.48682 -11.28365 -11.12439 -10.92999 -10.86145 -10.78993 -10.63819 -10.46957 -10.26797 -9.90392 -9.75371 -9.26873 -8.92893 -8.71520 -8.38356 -8.05114 -7.63610 -6.27982 -4.38346 1.53340 1.81766 2.24970 2.78397 3.17531 3.25682 3.28535 3.65228 3.95020 4.23244 4.25174 4.51016 4.70444 4.98519 4.99067 5.00692 5.03707 5.08327 5.32796 5.40890 5.43591 5.44608 5.53089 5.55695 5.61569 5.69770 5.73028 5.81589 5.88055 6.03281 6.12122 6.16506 6.32234 6.42027 6.46498 6.54265 6.79514 6.85070 7.08762 7.15809 7.22928 7.47354 7.55623 7.64970 7.67453 7.78062 7.94666 8.43111 8.73104 9.13542 9.31226 10.76245 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.004244 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.998734 B = 6595.254226 C = 8721.576962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.126 3.874 5 N -0.589 5.589 6 C 0.213 3.787 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.069 3.931 10 N -0.879 5.879 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.558 3.442 16 O -0.550 6.550 17 C -0.131 4.131 18 C -0.080 4.080 19 C -0.135 4.135 20 C -0.086 4.086 21 C -0.115 4.115 22 C -0.063 4.063 23 C 0.455 3.545 24 O -0.490 6.490 25 O -0.365 6.365 26 C 0.035 3.965 27 C -0.050 4.050 28 H 0.034 0.966 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.268 0.732 38 H 0.195 0.805 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -11.619 -1.762 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C -0.034 4.034 4 C 0.002 3.998 5 N -0.319 5.319 6 C 0.094 3.906 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.136 4.136 10 N -0.516 5.516 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.196 1.196 15 C 0.347 3.653 16 O -0.430 6.430 17 C -0.134 4.134 18 C -0.098 4.098 19 C -0.153 4.153 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.100 4.100 23 C 0.297 3.703 24 O -0.375 6.375 25 O -0.283 6.283 26 C -0.058 4.058 27 C -0.069 4.069 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.211 0.789 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.534 -11.671 -1.555 13.010 hybrid contribution 0.361 1.015 -0.282 1.114 sum -5.172 -10.656 -1.837 11.987 Atomic orbital electron populations 1.22661 0.82757 1.02018 0.99093 1.88164 1.17995 1.27113 1.95129 1.23055 0.95546 0.85121 0.99661 1.21297 0.90975 0.99551 0.87935 1.47929 1.64019 1.05438 1.14520 1.20151 0.95481 0.90560 0.84456 1.21466 1.03959 1.28437 1.04562 0.91562 1.25003 0.97997 0.95736 0.94838 1.69946 1.38233 1.35853 1.07525 0.86518 0.83625 0.78855 0.78723 1.20214 1.20999 1.19618 1.18196 0.77888 0.82341 0.86875 1.90681 1.49794 1.62385 1.40148 1.19977 1.01026 0.95393 0.97008 1.23312 0.92349 1.01942 0.92154 1.21131 1.01238 0.94805 0.98081 1.21060 0.96318 0.95111 0.97932 1.18937 1.00593 0.95189 0.96799 1.20225 0.93211 0.97087 0.99495 1.23910 0.85170 0.82379 0.78840 1.90739 1.63440 1.27974 1.55354 1.86493 1.42356 1.37027 1.62396 1.23224 0.85504 1.03131 0.93978 1.20905 0.97271 0.93758 0.94951 0.94723 0.90291 0.94846 0.93360 0.93279 0.90422 0.88453 0.95403 0.91755 0.92213 0.78908 0.85779 0.86701 0.86999 0.86919 0.91931 0.91974 0.88324 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.98 9.06 -50.94 -0.46 -7.45 16 3 C 0.04 0.76 6.28 37.16 0.23 1.00 16 4 C 0.13 2.42 5.80 -4.04 -0.02 2.40 16 5 N -0.59 -12.99 2.50 -176.18 -0.44 -13.43 16 6 C 0.21 5.06 4.66 -5.19 -0.02 5.04 16 7 C -0.55 -13.47 7.03 -34.44 -0.24 -13.71 16 8 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.07 1.73 5.43 -17.82 -0.10 1.63 16 10 N -0.88 -23.06 13.29 55.43 0.74 -22.32 16 11 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 12 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 15 C 0.56 12.73 7.11 -12.33 -0.09 12.64 16 16 O -0.55 -13.32 15.12 -10.40 -0.16 -13.48 16 17 C -0.13 -2.78 5.49 -104.97 -0.58 -3.36 16 18 C -0.08 -1.69 7.42 -39.19 -0.29 -1.98 16 19 C -0.13 -2.46 10.03 -39.64 -0.40 -2.85 16 20 C -0.09 -1.37 9.69 -39.49 -0.38 -1.75 16 21 C -0.11 -1.83 4.37 -104.68 -0.46 -2.28 16 22 C -0.06 -0.74 5.94 -29.04 -0.17 -0.91 16 23 C 0.46 6.29 7.95 36.00 0.29 6.57 16 24 O -0.49 -8.70 15.78 -18.76 -0.30 -9.00 16 25 O -0.37 -4.28 10.56 -39.23 -0.41 -4.69 16 26 C 0.04 0.33 10.56 101.05 1.07 1.39 16 27 C -0.05 -0.93 9.24 -39.19 -0.36 -1.29 16 28 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.51 7.55 -51.93 -0.39 1.12 16 34 H 0.10 1.76 7.86 -51.93 -0.41 1.35 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.61 4.24 -51.93 -0.22 1.39 16 37 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.19 4.50 3.39 -52.48 -0.18 4.32 16 39 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.11 0.98 8.08 -51.93 -0.42 0.56 16 42 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 43 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.12 2.22 7.90 -52.49 -0.41 1.80 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -31.82 387.77 -7.27 -39.09 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.65 Total: 6.83 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.41 Total: 4.10 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.30 Total: -35.75 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.33 Total: -34.61 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.82 -7.27 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614618320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.480 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds