Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00245 * 2 1 4 4 C 1.52998 * 109.47134 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46833 * 64.99509 * 4 3 2 6 6 C 1.46507 * 119.99754 * 92.62374 * 5 4 3 7 7 C 1.50696 * 109.47308 * 74.23726 * 6 5 4 8 8 H 1.08004 * 120.00279 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99712 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00309 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47461 * 89.99691 * 11 9 7 13 13 H 1.48503 * 109.47110 * 210.00231 * 11 9 7 14 14 H 1.48507 * 109.46953 * 329.99776 * 11 9 7 15 15 C 1.34772 * 120.00477 * 272.61148 * 5 4 3 16 16 O 1.21556 * 119.99566 * 3.07940 * 15 5 4 17 17 C 1.47848 * 120.00567 * 183.07256 * 15 5 4 18 18 C 1.39590 * 120.13932 * 27.96064 * 17 15 5 19 19 C 1.37936 * 119.85394 * 179.74761 * 18 17 15 20 20 C 1.38383 * 120.14132 * 0.53301 * 19 18 17 21 21 C 1.38336 * 120.29212 * 359.74408 * 20 19 18 22 22 C 1.50700 * 119.92782 * 180.02562 * 21 20 19 23 23 C 1.50695 * 109.47475 * 269.97955 * 22 21 20 24 24 O 1.20835 * 119.99471 * 359.97438 * 23 22 21 25 25 O 1.34221 * 120.00566 * 180.02562 * 23 22 21 26 26 C 1.45199 * 117.00170 * 180.02562 * 25 23 22 27 27 C 1.37973 * 120.14688 * 359.97438 * 21 20 19 28 28 H 1.09007 * 109.46369 * 60.00244 * 1 2 3 29 29 H 1.08996 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47185 * 300.00680 * 1 2 3 31 31 H 1.08998 * 109.47346 * 59.99231 * 3 2 1 32 32 H 1.09000 * 109.46547 * 299.99770 * 3 2 1 33 33 H 1.08998 * 109.47066 * 305.00288 * 4 3 2 34 34 H 1.08996 * 109.47116 * 184.99915 * 4 3 2 35 35 H 1.09001 * 109.46602 * 314.23474 * 6 5 4 36 36 H 1.08998 * 109.46726 * 194.23738 * 6 5 4 37 37 H 0.96999 * 119.99790 * 179.97438 * 10 9 7 38 38 H 1.08006 * 120.07757 * 0.02562 * 18 17 15 39 39 H 1.07998 * 119.93143 * 180.25416 * 19 18 17 40 40 H 1.08001 * 119.85439 * 179.76597 * 20 19 18 41 41 H 1.09000 * 109.47298 * 29.97745 * 22 21 20 42 42 H 1.09002 * 109.47528 * 149.97563 * 22 21 20 43 43 H 1.09000 * 109.47037 * 299.98996 * 26 25 23 44 44 H 1.08995 * 109.47745 * 59.99470 * 26 25 23 45 45 H 1.09001 * 109.47019 * 179.97438 * 26 25 23 46 46 H 1.07999 * 120.07777 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.3434 1.4022 -2.3949 7 6 5.6851 2.0397 -2.1410 8 1 6.2118 1.8406 -1.2194 9 6 6.2397 2.8779 -3.0848 10 7 5.5982 3.1207 -4.2068 11 14 7.9032 3.6676 -2.7704 12 1 8.9772 2.7820 -3.2872 13 1 7.9672 4.9796 -3.4631 14 1 8.0874 3.8691 -1.3106 15 6 4.0454 -0.7786 -1.3497 16 8 3.6882 -1.4755 -0.4199 17 6 4.5549 -1.4036 -2.5889 18 6 5.4713 -0.7224 -3.3918 19 6 5.9469 -1.3132 -4.5440 20 6 5.5090 -2.5738 -4.9102 21 6 4.5966 -3.2519 -4.1219 22 6 4.1257 -4.6246 -4.5282 23 6 2.9009 -4.4989 -5.3970 24 8 2.4557 -3.4065 -5.6591 25 8 2.3040 -5.6002 -5.8790 26 6 1.1291 -5.4034 -6.7093 27 6 4.1175 -2.6746 -2.9639 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0902 35 1 3.5917 2.1796 -2.5313 36 1 4.3975 0.7874 -3.2933 37 1 5.9882 3.7107 -4.8706 38 1 5.8108 0.2632 -3.1093 39 1 6.6590 -0.7890 -5.1640 40 1 5.8815 -3.0305 -5.8153 41 1 4.9154 -5.1297 -5.0844 42 1 3.8815 -5.2034 -3.6374 43 1 0.3625 -4.8819 -6.1363 44 1 1.3969 -4.8093 -7.5830 45 1 0.7462 -6.3715 -7.0322 46 1 3.4055 -3.2052 -2.3491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614618320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = -137.420503 kcal Electronic energy + Delta-G solvation = -29615.215290 eV Core-core repulsion = 25470.509805 eV Total energy + Delta-G solvation = -4144.705485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67945 -41.17568 -39.46222 -38.52518 -37.47215 -36.90597 -34.65220 -34.08531 -32.24327 -31.10777 -29.60018 -29.06737 -27.69239 -27.20233 -25.18389 -24.86341 -23.28340 -23.03767 -21.76170 -20.18048 -18.64740 -18.59609 -18.06740 -17.74351 -17.56000 -17.47179 -17.14631 -16.96922 -16.55095 -16.32506 -16.17773 -15.61060 -15.27129 -15.08757 -14.58573 -14.43969 -14.40409 -14.35454 -14.18998 -13.56932 -13.46054 -13.16627 -13.05155 -12.99302 -12.93329 -12.82663 -12.64107 -12.58176 -12.32350 -12.07043 -11.96959 -11.78416 -11.69571 -11.63987 -11.46039 -10.76110 -10.61779 -10.51856 -9.85160 -9.54951 -9.39743 -8.21042 -6.37846 0.06926 0.41795 1.21294 1.44027 1.46705 1.55653 1.78396 2.05727 2.28941 2.45047 2.92278 3.02374 3.07291 3.58715 3.73137 3.99058 4.05693 4.14106 4.18684 4.24929 4.32407 4.33772 4.36951 4.38024 4.49066 4.50394 4.57823 4.58869 4.66359 4.71560 4.72205 4.77566 4.89399 4.96026 5.02714 5.09826 5.24664 5.40006 5.49034 5.59504 5.65334 5.68601 5.81605 6.00260 6.08999 6.31759 6.59820 6.76784 6.81012 7.29360 7.43343 8.83292 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009039 B = 0.004244 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.998734 B = 6595.254226 C = 8721.576962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.050 3.950 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.230 3.770 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.032 3.968 10 N -0.909 5.909 11 Si 0.956 3.044 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.269 1.269 15 C 0.551 3.449 16 O -0.573 6.573 17 C -0.158 4.158 18 C -0.104 4.104 19 C -0.142 4.142 20 C -0.075 4.075 21 C -0.103 4.103 22 C -0.060 4.060 23 C 0.460 3.540 24 O -0.539 6.539 25 O -0.360 6.360 26 C 0.028 3.972 27 C -0.060 4.060 28 H 0.037 0.963 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.006 0.994 36 H 0.054 0.946 37 H 0.270 0.730 38 H 0.168 0.832 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.137 0.863 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.135 0.865 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 -13.478 -2.540 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.110 3.890 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.171 4.171 10 N -0.547 5.547 11 Si 0.781 3.219 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.341 3.659 16 O -0.454 6.454 17 C -0.161 4.161 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.093 4.093 21 C -0.104 4.104 22 C -0.097 4.097 23 C 0.304 3.696 24 O -0.428 6.428 25 O -0.276 6.276 26 C -0.065 4.065 27 C -0.079 4.079 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.024 0.976 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.185 0.815 39 H 0.152 0.848 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.155 0.845 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.153 0.847 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.132 -13.548 -2.320 14.672 hybrid contribution 0.147 1.476 -0.086 1.486 sum -4.984 -12.071 -2.406 13.280 Atomic orbital electron populations 1.22852 0.80547 1.03071 1.00456 1.88108 1.20560 1.27975 1.95412 1.22989 0.93935 0.84978 1.00860 1.21484 0.92790 0.99484 0.86580 1.47976 1.63901 1.05391 1.14878 1.19830 0.94551 0.89752 0.84894 1.21511 1.04201 1.28531 1.04313 0.92227 1.25644 1.00939 0.96036 0.94449 1.70039 1.39739 1.36577 1.08309 0.85581 0.79834 0.77959 0.78537 1.19645 1.20723 1.19388 1.18571 0.77561 0.82406 0.87383 1.90638 1.51101 1.62673 1.41035 1.20007 1.02345 0.96796 0.96968 1.23027 0.93818 1.01397 0.93888 1.21322 1.01439 0.96046 0.97177 1.21496 0.95151 0.93889 0.98790 1.19340 0.99118 0.96825 0.95085 1.20371 0.93623 0.94855 1.00825 1.24219 0.85206 0.82001 0.78168 1.90741 1.64955 1.29749 1.57367 1.86487 1.42920 1.35878 1.62319 1.23510 0.84428 1.05255 0.93318 1.21059 0.97532 0.93001 0.96303 0.94445 0.89499 0.92280 0.89861 0.94137 0.90938 0.87782 0.97632 0.92878 0.92061 0.81534 0.84768 0.82538 0.82754 0.84481 0.92751 0.92209 0.84665 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -15.48 9.06 -133.96 -1.21 -16.69 16 3 C 0.05 1.74 6.28 71.98 0.45 2.20 16 4 C 0.12 4.74 5.80 86.38 0.50 5.24 16 5 N -0.59 -27.34 2.50 -829.57 -2.07 -29.41 16 6 C 0.23 11.49 4.66 85.63 0.40 11.89 16 7 C -0.55 -27.91 7.03 25.60 0.18 -27.73 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.03 1.61 5.43 84.66 0.46 2.07 16 10 N -0.91 -48.74 13.29 21.45 0.28 -48.46 16 11 Si 0.96 40.30 29.54 68.60 2.03 42.32 16 12 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 13 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 14 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 15 C 0.55 26.23 7.11 86.79 0.62 26.84 16 16 O -0.57 -28.72 15.12 11.13 0.17 -28.55 16 17 C -0.16 -6.94 5.49 -20.09 -0.11 -7.05 16 18 C -0.10 -4.51 7.42 22.52 0.17 -4.34 16 19 C -0.14 -5.13 10.03 22.23 0.22 -4.91 16 20 C -0.08 -2.22 9.69 22.33 0.22 -2.00 16 21 C -0.10 -3.08 4.37 -19.90 -0.09 -3.16 16 22 C -0.06 -1.19 5.94 29.10 0.17 -1.02 16 23 C 0.46 11.58 7.95 71.23 0.57 12.15 16 24 O -0.54 -18.64 15.78 21.94 0.35 -18.29 16 25 O -0.36 -7.38 10.56 -51.33 -0.54 -7.92 16 26 C 0.03 0.45 10.56 113.37 1.20 1.65 16 27 C -0.06 -2.24 9.24 22.53 0.21 -2.03 16 28 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.92 7.55 -2.39 -0.02 2.90 16 34 H 0.10 3.88 7.86 -2.39 -0.02 3.86 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.05 2.82 4.24 -2.39 -0.01 2.81 16 37 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.17 8.15 3.39 -2.91 -0.01 8.14 16 39 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 40 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.15 1.84 8.08 -2.39 -0.02 1.82 16 42 H 0.14 2.15 8.08 -2.39 -0.02 2.13 16 43 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 44 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 45 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.12 4.47 7.90 -2.91 -0.02 4.44 16 Total: -1.00 -72.03 387.77 6.39 -65.64 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.99 Total: 29.57 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 6.41 Total: 11.79 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.79 Total: -77.87 kcal Atomic # 8 Polarization: -70.21 SS G_CDS: -1.24 Total: -71.46 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -72.03 6.39 -65.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614618320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.780 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds