Wall clock time and date at job start Tue Mar 31 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99619 * 2 1 4 4 C 1.38542 * 120.08649 * 0.29448 * 3 2 1 5 5 C 1.38250 * 120.01287 * 180.31832 * 4 3 2 6 6 C 1.38268 * 120.18188 * 359.68409 * 5 4 3 7 7 C 1.38204 * 120.16359 * 359.97438 * 6 5 4 8 8 C 1.38717 * 119.98136 * 0.02562 * 7 6 5 9 9 N 1.40122 * 120.08756 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99519 * 316.74504 * 9 8 7 11 11 S 1.71196 * 120.00215 * 354.74814 * 10 9 8 12 12 N 1.34777 * 119.99317 * 174.46894 * 10 9 8 13 13 C 1.46506 * 119.99814 * 180.27808 * 12 10 9 14 14 C 1.53040 * 109.45950 * 275.02730 * 13 12 10 15 15 C 1.53193 * 109.31167 * 178.60014 * 14 13 12 16 16 N 1.46919 * 108.76628 * 54.65386 * 15 14 13 17 17 C 1.36937 * 120.62976 * 126.35879 * 16 15 14 18 18 H 1.08000 * 120.00264 * 331.99501 * 17 16 15 19 19 C 1.38814 * 119.99925 * 151.99100 * 17 16 15 20 20 N 1.31624 * 119.99994 * 343.31468 * 19 17 16 21 21 Si 1.86801 * 120.00010 * 163.31222 * 19 17 16 22 22 H 1.48501 * 109.47417 * 90.00012 * 21 19 17 23 23 H 1.48509 * 109.47084 * 210.00289 * 21 19 17 24 24 H 1.48500 * 109.47064 * 329.99698 * 21 19 17 25 25 C 1.46928 * 118.74017 * 306.38630 * 16 15 14 26 26 C 1.53040 * 109.45935 * 154.97405 * 13 12 10 27 27 H 1.08993 * 109.47093 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47265 * 300.00646 * 1 2 3 29 29 H 1.09003 * 109.46512 * 60.00282 * 1 2 3 30 30 H 1.08003 * 119.99014 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.90831 * 179.70150 * 5 4 3 32 32 H 1.08003 * 119.91757 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.00954 * 180.02562 * 7 6 5 34 34 H 0.97000 * 120.00138 * 136.75223 * 9 8 7 35 35 H 0.96997 * 120.00252 * 0.27895 * 12 10 9 36 36 H 1.09006 * 109.45672 * 34.99911 * 13 12 10 37 37 H 1.08997 * 109.49557 * 298.56326 * 14 13 12 38 38 H 1.09004 * 109.49347 * 58.66222 * 14 13 12 39 39 H 1.09000 * 109.59716 * 294.86970 * 15 14 13 40 40 H 1.08994 * 109.70110 * 174.50796 * 15 14 13 41 41 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.58492 * 293.81782 * 25 16 15 43 43 H 1.09004 * 109.70391 * 173.46174 * 25 16 15 44 44 H 1.09002 * 109.49748 * 301.33289 * 26 13 12 45 45 H 1.08998 * 109.49704 * 61.40044 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2935 2.3747 0.0062 5 6 1.9226 3.6058 -0.0005 6 6 3.3032 3.6808 -0.0067 7 6 4.0615 2.5254 -0.0058 8 6 3.4373 1.2866 0.0009 9 7 4.2040 0.1138 0.0024 10 6 5.2814 0.0120 -0.8009 11 16 5.6361 1.2587 -1.9193 12 7 6.0827 -1.0686 -0.7198 13 6 7.2573 -1.1765 -1.5887 14 6 6.8412 -1.7677 -2.9375 15 6 8.0651 -1.8465 -3.8554 16 7 9.1238 -2.5984 -3.1681 17 6 9.7135 -3.6792 -3.7675 18 1 9.1623 -4.2640 -4.4891 19 6 11.0198 -4.0231 -3.4478 20 7 11.7990 -3.1541 -2.8395 21 14 11.6717 -5.7193 -3.8807 22 1 12.2754 -5.6863 -5.2371 23 1 12.7021 -6.1214 -2.8898 24 1 10.5557 -6.6988 -3.8593 25 6 9.5373 -2.1690 -1.8252 26 6 8.2968 -2.0864 -0.9302 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 0.2149 2.3195 0.0114 31 1 1.3340 4.5113 -0.0006 32 1 3.7902 4.6448 -0.0115 33 1 5.1398 2.5870 -0.0102 34 1 3.9593 -0.6249 0.5815 35 1 5.8817 -1.7750 -0.0861 36 1 7.6869 -0.1866 -1.7430 37 1 6.4345 -2.7676 -2.7865 38 1 6.0836 -1.1316 -3.3953 39 1 8.4188 -0.8403 -4.0804 40 1 7.7977 -2.3553 -4.7815 41 1 12.7120 -3.3943 -2.6163 42 1 10.0110 -1.1892 -1.8846 43 1 10.2407 -2.8903 -1.4091 44 1 8.5755 -1.6772 0.0409 45 1 7.8760 -3.0831 -0.7978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730435816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:10 Heat of formation + Delta-G solvation = 37.697799 kcal Electronic energy + Delta-G solvation = -26314.041690 eV Core-core repulsion = 22651.975526 eV Total energy + Delta-G solvation = -3662.066164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77569 -39.20398 -37.94658 -36.90475 -34.92844 -32.38272 -30.56637 -30.39778 -29.87191 -29.06381 -27.52464 -25.34289 -24.14674 -22.71094 -22.44598 -21.89134 -21.82628 -19.53598 -18.95247 -18.17244 -17.62029 -16.68667 -16.40417 -16.07023 -15.80999 -15.17039 -14.88682 -14.79673 -14.56086 -14.20155 -13.94729 -13.67906 -13.51906 -13.08448 -12.97501 -12.52304 -12.44938 -12.34225 -11.82743 -11.50077 -11.44182 -11.40037 -11.13969 -11.02432 -10.90250 -10.72472 -10.60236 -10.34905 -10.13878 -9.89058 -9.61407 -9.52449 -8.83667 -8.49619 -8.21348 -7.60862 -6.97081 -6.68872 -5.80937 -3.22784 0.87731 1.26633 1.62284 2.05309 2.59348 2.90469 3.36319 3.43501 3.45400 3.51570 3.61271 4.48501 4.55057 4.65237 4.78353 4.83592 4.99118 5.12455 5.20264 5.23802 5.31127 5.33587 5.43145 5.52183 5.59809 5.79886 5.85871 5.96389 6.02447 6.14215 6.24637 6.27885 6.36493 6.44161 6.50093 6.55797 6.60625 6.73031 6.80802 6.90721 7.02414 7.15489 7.26444 7.33193 7.59340 7.78398 8.43217 9.19416 9.82586 10.39420 11.28156 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.002423 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.351549 B =11553.594172 C =12033.986519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.207 4.207 5 C -0.079 4.079 6 C -0.148 4.148 7 C -0.032 4.032 8 C 0.106 3.894 9 N -0.632 5.632 10 C 0.558 3.442 11 S -0.628 6.628 12 N -0.666 5.666 13 C 0.147 3.853 14 C -0.137 4.137 15 C 0.150 3.850 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.177 3.823 26 C -0.148 4.148 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.406 0.594 35 H 0.394 0.606 36 H 0.112 0.888 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.495 8.714 11.587 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.055 4.055 8 C 0.012 3.988 9 N -0.259 5.259 10 C 0.198 3.802 11 S -0.498 6.498 12 N -0.291 5.291 13 C 0.045 3.955 14 C -0.178 4.178 15 C 0.023 3.977 16 N -0.315 5.315 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.050 3.950 26 C -0.188 4.188 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.243 0.757 35 H 0.230 0.770 36 H 0.130 0.870 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.824 9.285 10.757 26.042 hybrid contribution -0.398 -2.161 0.879 2.367 sum -22.223 7.123 11.636 26.076 Atomic orbital electron populations 1.23048 0.78097 1.03941 1.01443 1.86036 1.21647 1.26719 1.88987 1.18810 0.90308 0.84949 0.98782 1.20962 0.99703 0.91787 1.10249 1.20974 0.94778 0.96823 0.97157 1.20918 0.93461 0.98250 1.04155 1.21261 1.01863 0.89630 0.92721 1.16649 0.86057 0.85876 1.10211 1.42010 1.25766 1.17447 1.40668 1.22466 0.81921 0.89794 0.85978 1.93406 1.82434 1.34274 1.39685 1.45716 1.26008 1.18348 1.39013 1.21717 0.81969 1.02667 0.89161 1.22366 1.00442 0.99622 0.95355 1.20847 0.87638 0.95475 0.93693 1.44108 1.41437 1.32532 1.13465 1.19179 0.94019 1.02687 1.22265 0.91648 1.25053 0.95481 0.98221 1.00913 1.70016 1.06564 1.32833 1.45356 0.86311 0.78406 0.84366 0.77773 1.21326 1.21579 1.20565 1.20730 0.91031 0.99501 0.83755 1.22624 0.98623 0.98056 0.99512 0.88290 0.92609 0.92466 0.85276 0.85713 0.85322 0.83312 0.75677 0.77031 0.86977 0.92809 0.91361 0.95550 0.92456 0.93572 0.95751 0.88828 0.92653 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.15 10.20 -19.70 -0.20 -3.35 16 3 C 0.12 1.28 6.70 -39.07 -0.26 1.02 16 4 C -0.21 -1.85 9.04 -39.46 -0.36 -2.21 16 5 C -0.08 -0.68 10.04 -39.57 -0.40 -1.08 16 6 C -0.15 -1.48 10.04 -39.58 -0.40 -1.88 16 7 C -0.03 -0.39 7.87 -39.42 -0.31 -0.70 16 8 C 0.11 1.28 5.89 -83.49 -0.49 0.79 16 9 N -0.63 -7.27 5.10 -11.28 -0.06 -7.33 16 10 C 0.56 7.91 7.71 -86.92 -0.67 7.24 16 11 S -0.63 -11.37 23.99 -107.50 -2.58 -13.95 16 12 N -0.67 -8.81 5.08 -55.48 -0.28 -9.09 16 13 C 0.15 2.46 2.18 -67.89 -0.15 2.31 16 14 C -0.14 -2.49 5.60 -26.61 -0.15 -2.64 16 15 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 16 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 17 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 20 N -0.90 -25.86 11.17 55.49 0.62 -25.24 16 21 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.18 4.05 5.30 -3.71 -0.02 4.04 16 26 C -0.15 -2.60 5.55 -26.61 -0.15 -2.74 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 29 H 0.06 0.31 7.68 -51.93 -0.40 -0.09 16 30 H 0.13 0.83 6.30 -52.48 -0.33 0.50 16 31 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.15 2.01 6.40 -52.06 -0.33 1.68 16 34 H 0.41 3.59 8.79 -40.82 -0.36 3.23 16 35 H 0.39 4.05 8.62 -40.82 -0.35 3.70 16 36 H 0.11 2.14 6.82 -51.93 -0.35 1.78 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.26 7.49 -51.93 -0.39 0.87 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -32.71 371.07 -11.63 -44.34 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.57 Total: 6.26 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.61 Total: 1.50 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.24 Total: -56.80 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.20 Total: -3.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: -11.37 SS G_CDS: -2.58 Total: -13.95 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -11.63 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730435816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.041 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds