Wall clock time and date at job start Tue Mar 31 2020 18:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35989 * 116.99619 * 2 1 4 4 C 1.38542 * 120.08649 * 0.29448 * 3 2 1 5 5 C 1.38250 * 120.01287 * 180.31832 * 4 3 2 6 6 C 1.38268 * 120.18188 * 359.68409 * 5 4 3 7 7 C 1.38204 * 120.16359 * 359.97438 * 6 5 4 8 8 C 1.38717 * 119.98136 * 0.02562 * 7 6 5 9 9 N 1.40122 * 120.08756 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99519 * 316.74504 * 9 8 7 11 11 S 1.71196 * 120.00215 * 354.74814 * 10 9 8 12 12 N 1.34777 * 119.99317 * 174.46894 * 10 9 8 13 13 C 1.46506 * 119.99814 * 180.27808 * 12 10 9 14 14 C 1.53040 * 109.45950 * 275.02730 * 13 12 10 15 15 C 1.53193 * 109.31167 * 178.60014 * 14 13 12 16 16 N 1.46919 * 108.76628 * 54.65386 * 15 14 13 17 17 C 1.36937 * 120.62976 * 126.35879 * 16 15 14 18 18 H 1.08000 * 120.00264 * 331.99501 * 17 16 15 19 19 C 1.38814 * 119.99925 * 151.99100 * 17 16 15 20 20 N 1.31624 * 119.99994 * 343.31468 * 19 17 16 21 21 Si 1.86801 * 120.00010 * 163.31222 * 19 17 16 22 22 H 1.48501 * 109.47417 * 90.00012 * 21 19 17 23 23 H 1.48509 * 109.47084 * 210.00289 * 21 19 17 24 24 H 1.48500 * 109.47064 * 329.99698 * 21 19 17 25 25 C 1.46928 * 118.74017 * 306.38630 * 16 15 14 26 26 C 1.53040 * 109.45935 * 154.97405 * 13 12 10 27 27 H 1.08993 * 109.47093 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47265 * 300.00646 * 1 2 3 29 29 H 1.09003 * 109.46512 * 60.00282 * 1 2 3 30 30 H 1.08003 * 119.99014 * 0.02562 * 4 3 2 31 31 H 1.08006 * 119.90831 * 179.70150 * 5 4 3 32 32 H 1.08003 * 119.91757 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.00954 * 180.02562 * 7 6 5 34 34 H 0.97000 * 120.00138 * 136.75223 * 9 8 7 35 35 H 0.96997 * 120.00252 * 0.27895 * 12 10 9 36 36 H 1.09006 * 109.45672 * 34.99911 * 13 12 10 37 37 H 1.08997 * 109.49557 * 298.56326 * 14 13 12 38 38 H 1.09004 * 109.49347 * 58.66222 * 14 13 12 39 39 H 1.09000 * 109.59716 * 294.86970 * 15 14 13 40 40 H 1.08994 * 109.70110 * 174.50796 * 15 14 13 41 41 H 0.97002 * 120.00038 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.58492 * 293.81782 * 25 16 15 43 43 H 1.09004 * 109.70391 * 173.46174 * 25 16 15 44 44 H 1.09002 * 109.49748 * 301.33289 * 26 13 12 45 45 H 1.08998 * 109.49704 * 61.40044 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2935 2.3747 0.0062 5 6 1.9226 3.6058 -0.0005 6 6 3.3032 3.6808 -0.0067 7 6 4.0615 2.5254 -0.0058 8 6 3.4373 1.2866 0.0009 9 7 4.2040 0.1138 0.0024 10 6 5.2814 0.0120 -0.8009 11 16 5.6361 1.2587 -1.9193 12 7 6.0827 -1.0686 -0.7198 13 6 7.2573 -1.1765 -1.5887 14 6 6.8412 -1.7677 -2.9375 15 6 8.0651 -1.8465 -3.8554 16 7 9.1238 -2.5984 -3.1681 17 6 9.7135 -3.6792 -3.7675 18 1 9.1623 -4.2640 -4.4891 19 6 11.0198 -4.0231 -3.4478 20 7 11.7990 -3.1541 -2.8395 21 14 11.6717 -5.7193 -3.8807 22 1 12.2754 -5.6863 -5.2371 23 1 12.7021 -6.1214 -2.8898 24 1 10.5557 -6.6988 -3.8593 25 6 9.5373 -2.1690 -1.8252 26 6 8.2968 -2.0864 -0.9302 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 0.2149 2.3195 0.0114 31 1 1.3340 4.5113 -0.0006 32 1 3.7902 4.6448 -0.0115 33 1 5.1398 2.5870 -0.0102 34 1 3.9593 -0.6249 0.5815 35 1 5.8817 -1.7750 -0.0861 36 1 7.6869 -0.1866 -1.7430 37 1 6.4345 -2.7676 -2.7865 38 1 6.0836 -1.1316 -3.3953 39 1 8.4188 -0.8403 -4.0804 40 1 7.7977 -2.3553 -4.7815 41 1 12.7120 -3.3943 -2.6163 42 1 10.0110 -1.1892 -1.8846 43 1 10.2407 -2.8903 -1.4091 44 1 8.5755 -1.6772 0.0409 45 1 7.8760 -3.0831 -0.7978 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730435816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:10 Heat of formation + Delta-G solvation = 17.971427 kcal Electronic energy + Delta-G solvation = -26314.897090 eV Core-core repulsion = 22651.975526 eV Total energy + Delta-G solvation = -3662.921563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60288 -40.40376 -39.01984 -38.01074 -36.29654 -34.13180 -32.09486 -31.42591 -31.15519 -30.26054 -28.08626 -27.05863 -25.46707 -24.00707 -23.79317 -23.12316 -22.91441 -21.12108 -19.87313 -19.40296 -18.66004 -18.31088 -17.30634 -16.97885 -16.77557 -16.60412 -16.32174 -15.78433 -15.64077 -15.45491 -15.32600 -14.98673 -14.79938 -14.66288 -14.19137 -14.03075 -13.52358 -13.20811 -13.04910 -12.98346 -12.64054 -12.57266 -12.54144 -12.29326 -12.22724 -12.07510 -12.04150 -12.00893 -11.86045 -11.62491 -11.35821 -10.78375 -10.54100 -9.72920 -9.13490 -8.86058 -8.71592 -8.28545 -7.87838 -5.33232 -0.08258 0.50174 0.59314 0.89218 1.42393 1.48698 1.49326 1.59173 2.25371 2.48851 2.51993 2.84307 3.28313 3.65634 3.78884 3.90796 3.95693 4.00924 4.23051 4.30455 4.36921 4.41652 4.42130 4.49733 4.52617 4.62101 4.64260 4.75442 4.79009 4.85013 4.93543 5.05913 5.12990 5.15573 5.21642 5.28595 5.38970 5.43790 5.51673 5.62545 5.64748 5.71592 5.79813 5.92347 6.31143 6.39097 6.41990 7.14638 7.83855 8.36659 9.19309 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.002423 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.351549 B =11553.594172 C =12033.986519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.158 4.158 7 C -0.048 4.048 8 C 0.075 3.925 9 N -0.608 5.608 10 C 0.579 3.421 11 S -0.707 6.707 12 N -0.651 5.651 13 C 0.164 3.836 14 C -0.120 4.120 15 C 0.149 3.851 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.067 0.933 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.269 1.269 25 C 0.181 3.819 26 C -0.130 4.130 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.141 0.859 33 H 0.127 0.873 34 H 0.422 0.578 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.010 0.990 40 H 0.056 0.944 41 H 0.251 0.749 42 H -0.003 1.003 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.684 7.971 12.989 29.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.226 4.226 5 C -0.089 4.089 6 C -0.178 4.178 7 C -0.070 4.070 8 C -0.018 4.018 9 N -0.234 5.234 10 C 0.216 3.784 11 S -0.579 6.579 12 N -0.278 5.278 13 C 0.060 3.940 14 C -0.160 4.160 15 C 0.023 3.977 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.084 0.916 19 C -0.244 4.244 20 N -0.581 5.581 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.194 1.194 25 C 0.054 3.946 26 C -0.169 4.169 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.176 0.824 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.262 0.738 35 H 0.254 0.746 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.098 8.533 12.210 29.186 hybrid contribution 0.441 -1.849 0.476 1.959 sum -24.657 6.684 12.686 28.524 Atomic orbital electron populations 1.23349 0.76026 1.05492 1.02541 1.86012 1.23802 1.26365 1.88794 1.18918 0.89881 0.86029 0.98266 1.21352 1.01149 0.91156 1.08928 1.21364 0.94284 0.98138 0.95107 1.21160 0.94406 0.98136 1.04067 1.21181 1.01085 0.90781 0.93993 1.16859 0.86952 0.85648 1.12374 1.41876 1.24309 1.17926 1.39301 1.21895 0.82471 0.88641 0.85345 1.93588 1.84137 1.37281 1.42920 1.45168 1.24935 1.18760 1.38958 1.21210 0.82754 1.01041 0.88976 1.22120 0.98449 1.00128 0.95343 1.20889 0.88210 0.94089 0.94503 1.44356 1.41909 1.32519 1.14387 1.19501 0.94319 1.03309 1.22209 0.91559 1.25805 0.95739 1.01532 1.01370 1.70176 1.06633 1.34533 1.46751 0.85278 0.77764 0.80300 0.77080 1.21418 1.21720 1.19424 1.20537 0.92930 0.96988 0.84105 1.22317 0.96273 0.99139 0.99204 0.86696 0.90862 0.91915 0.82403 0.82541 0.84116 0.85536 0.73799 0.74569 0.89294 0.91898 0.91470 0.97248 0.92540 0.93979 0.98486 0.91559 0.90190 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.73 10.20 -93.42 -0.95 -6.69 16 3 C 0.12 2.26 6.70 22.60 0.15 2.41 16 4 C -0.21 -3.06 9.04 22.35 0.20 -2.86 16 5 C -0.07 -1.03 10.04 22.28 0.22 -0.80 16 6 C -0.16 -3.01 10.04 22.27 0.22 -2.78 16 7 C -0.05 -1.17 7.87 22.38 0.18 -1.00 16 8 C 0.08 1.74 5.89 38.19 0.22 1.97 16 9 N -0.61 -13.15 5.10 -189.61 -0.97 -14.12 16 10 C 0.58 15.96 7.71 179.05 1.38 17.34 16 11 S -0.71 -26.31 23.99 -56.49 -1.35 -27.66 16 12 N -0.65 -16.12 5.08 -329.43 -1.67 -17.79 16 13 C 0.16 5.38 2.18 45.02 0.10 5.48 16 14 C -0.12 -4.29 5.60 30.67 0.17 -4.12 16 15 C 0.15 6.55 6.52 86.36 0.56 7.11 16 16 N -0.61 -30.57 2.99 -699.11 -2.09 -32.66 16 17 C -0.26 -14.43 9.59 84.03 0.81 -13.62 16 18 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.72 4.93 84.86 0.42 -2.30 16 20 N -0.93 -54.94 11.17 21.65 0.24 -54.69 16 21 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.18 8.50 5.30 86.36 0.46 8.96 16 26 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 27 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 29 H 0.06 0.48 7.68 -2.39 -0.02 0.46 16 30 H 0.16 1.37 6.30 -2.91 -0.02 1.35 16 31 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.13 3.61 6.40 -3.18 -0.02 3.59 16 34 H 0.42 6.48 8.79 -92.71 -0.81 5.66 16 35 H 0.41 7.24 8.62 -92.71 -0.80 6.44 16 36 H 0.09 3.46 6.82 -2.38 -0.02 3.44 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 38 H 0.07 2.46 7.49 -2.38 -0.02 2.44 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.07 3.48 6.04 -2.38 -0.01 3.47 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -73.81 371.07 1.02 -72.80 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.59 Total: 21.56 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.38 Total: 12.82 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -4.49 Total: -119.27 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.95 Total: -6.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -26.31 SS G_CDS: -1.35 Total: -27.66 kcal Total: -73.81 1.02 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730435816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.767 kcal (2) G-P(sol) polarization free energy of solvation -73.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds