Wall clock time and date at job start Tue Mar 31 2020 18:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 116.99980 * 2 1 4 4 C 1.38719 * 119.98505 * 179.97438 * 3 2 1 5 5 C 1.38098 * 120.01212 * 180.02562 * 4 3 2 6 6 C 1.38843 * 119.98797 * 0.02562 * 5 4 3 7 7 N 1.40096 * 120.01898 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99654 * 41.61845 * 7 6 5 9 9 S 1.71205 * 119.99973 * 5.64574 * 8 7 6 10 10 N 1.34777 * 119.99928 * 185.64149 * 8 7 6 11 11 C 1.46498 * 119.99851 * 180.02562 * 10 8 7 12 12 C 1.53074 * 109.44323 * 84.79791 * 11 10 8 13 13 C 1.53189 * 109.29426 * 181.23830 * 12 11 10 14 14 N 1.46922 * 108.89167 * 305.57065 * 13 12 11 15 15 C 1.36945 * 120.63590 * 233.52038 * 14 13 12 16 16 H 1.07997 * 119.99753 * 152.86020 * 15 14 13 17 17 C 1.38807 * 119.99573 * 332.85548 * 15 14 13 18 18 N 1.31617 * 120.00272 * 344.07137 * 17 15 14 19 19 Si 1.86803 * 120.00001 * 164.06526 * 17 15 14 20 20 H 1.48505 * 109.46832 * 60.00222 * 19 17 15 21 21 H 1.48496 * 109.47209 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46851 * 300.00541 * 19 17 15 23 23 C 1.46932 * 118.73565 * 53.54351 * 14 13 12 24 24 C 1.53041 * 109.45813 * 204.99817 * 11 10 8 25 25 C 1.38855 * 119.96910 * 0.25440 * 6 5 4 26 26 C 1.38095 * 119.97778 * 359.51074 * 25 6 5 27 27 H 1.08991 * 109.47096 * 299.99857 * 1 2 3 28 28 H 1.08999 * 109.46476 * 60.00101 * 1 2 3 29 29 H 1.08996 * 109.46597 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99060 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.00337 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00363 * 221.62245 * 7 6 5 33 33 H 0.96998 * 119.99799 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.45898 * 324.97112 * 11 10 8 35 35 H 1.09000 * 109.39321 * 61.35632 * 12 11 10 36 36 H 1.09006 * 109.61880 * 301.24970 * 12 11 10 37 37 H 1.08999 * 109.58607 * 185.71872 * 13 12 11 38 38 H 1.08996 * 109.59117 * 65.43476 * 13 12 11 39 39 H 0.96997 * 120.00306 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58737 * 66.17986 * 23 14 13 41 41 H 1.09007 * 109.58238 * 186.46351 * 23 14 13 42 42 H 1.09004 * 109.49436 * 58.67791 * 24 11 10 43 43 H 1.09004 * 109.52659 * 298.59648 * 24 11 10 44 44 H 1.07992 * 120.00760 * 179.72475 * 25 6 5 45 45 H 1.08004 * 119.98790 * 180.22924 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0592 2.5140 0.0011 6 6 3.3033 3.6786 0.0016 7 7 3.9392 4.9270 0.0027 8 6 5.0229 5.1318 -0.7720 9 16 5.5364 3.9173 -1.8641 10 7 5.7023 6.2927 -0.6871 11 6 6.8798 6.5156 -1.5296 12 6 6.4358 7.0396 -2.8976 13 6 7.6672 7.2421 -3.7861 14 7 8.6220 8.1111 -3.0850 15 6 9.1082 9.2416 -3.6860 16 1 9.4295 10.0780 -3.0831 17 6 9.1881 9.3121 -5.0699 18 7 9.1023 8.2144 -5.7909 19 14 9.4172 10.9652 -5.9092 20 1 10.6844 11.5847 -5.4447 21 1 9.4712 10.7702 -7.3803 22 1 8.2777 11.8548 -5.5697 23 6 9.0458 7.7441 -1.7268 24 6 7.7995 7.5392 -0.8600 25 6 1.9167 3.6056 0.0070 26 6 1.2905 2.3748 0.0015 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 4.0195 0.3779 0.0014 31 1 5.1378 2.5701 0.0019 32 1 3.5997 5.6438 0.5610 33 1 5.4111 6.9809 -0.0687 34 1 7.4164 5.5757 -1.6597 35 1 5.9186 7.9906 -2.7704 36 1 5.7643 6.3194 -3.3651 37 1 7.3681 7.7098 -4.7241 38 1 8.1327 6.2780 -3.9908 39 1 9.1577 8.2637 -6.7581 40 1 9.6229 6.8200 -1.7613 41 1 9.6583 8.5421 -1.3070 42 1 8.0962 7.1734 0.1231 43 1 7.2719 8.4869 -0.7515 44 1 1.3282 4.5110 0.0119 45 1 0.2120 2.3178 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730437465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:14 Heat of formation + Delta-G solvation = 38.991944 kcal Electronic energy + Delta-G solvation = -25937.921121 eV Core-core repulsion = 22275.911076 eV Total energy + Delta-G solvation = -3662.010045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57343 -39.45155 -38.22709 -36.59003 -34.67103 -32.35132 -31.34993 -30.22302 -29.81106 -28.89318 -27.38915 -25.23454 -24.15135 -22.97243 -22.48981 -21.90595 -21.69899 -19.56263 -18.64312 -18.28835 -17.90686 -16.75502 -16.29797 -15.96123 -15.93024 -15.23218 -14.83357 -14.68225 -14.42648 -13.98574 -13.80611 -13.55572 -13.46868 -13.11313 -13.02732 -12.97993 -12.46461 -12.44100 -12.18532 -11.55989 -11.48765 -11.12173 -11.09426 -10.99414 -10.93770 -10.73923 -10.44093 -10.30956 -10.15368 -9.85219 -9.66983 -9.34129 -9.18280 -8.46990 -8.10473 -7.61179 -6.92725 -6.70424 -5.78174 -3.22130 0.91322 1.22347 1.62622 2.03280 2.58113 3.05843 3.37508 3.43811 3.44552 3.46316 3.61602 4.48201 4.53114 4.68870 4.79210 4.84611 5.05733 5.09786 5.16060 5.22057 5.33151 5.35379 5.41301 5.54761 5.65111 5.74416 5.78895 5.92329 6.01980 6.10610 6.11589 6.17913 6.29342 6.40049 6.48174 6.59685 6.61532 6.72534 6.81233 6.88701 6.96946 7.19340 7.26841 7.42116 7.72423 7.79169 8.44297 9.20298 9.83111 10.38764 11.29772 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.002204 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.149019 B =12701.655055 C =12954.695046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.143 4.143 5 C -0.030 4.030 6 C 0.099 3.901 7 N -0.640 5.640 8 C 0.553 3.447 9 S -0.617 6.617 10 N -0.667 5.667 11 C 0.146 3.854 12 C -0.144 4.144 13 C 0.175 3.825 14 N -0.592 5.592 15 C -0.257 4.257 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.150 3.850 24 C -0.140 4.140 25 C -0.087 4.087 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.403 0.597 33 H 0.393 0.607 34 H 0.112 0.888 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.026 0.974 39 H 0.256 0.744 40 H 0.024 0.976 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.428 -9.964 17.010 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.163 4.163 5 C -0.053 4.053 6 C 0.006 3.994 7 N -0.267 5.267 8 C 0.195 3.805 9 S -0.486 6.486 10 N -0.292 5.292 11 C 0.044 3.956 12 C -0.185 4.185 13 C 0.049 3.951 14 N -0.315 5.315 15 C -0.386 4.386 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.023 3.977 24 C -0.180 4.180 25 C -0.108 4.108 26 C -0.225 4.225 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.240 0.760 33 H 0.228 0.772 34 H 0.130 0.870 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.791 -10.935 15.954 25.613 hybrid contribution -0.897 2.420 0.525 2.634 sum -17.688 -8.515 16.479 25.630 Atomic orbital electron populations 1.23042 0.78590 1.03850 1.01307 1.86098 1.21225 1.27030 1.88733 1.19077 0.92394 0.84003 0.96360 1.20259 0.91020 0.98368 1.06683 1.21236 1.01665 0.89724 0.92670 1.17247 0.90907 0.83646 1.07620 1.42185 1.27634 1.13804 1.43063 1.22494 0.82669 0.89573 0.85798 1.93526 1.76769 1.37827 1.40526 1.45704 1.28932 1.13967 1.40548 1.21732 0.82653 1.01262 0.89943 1.22573 1.01669 0.99424 0.94812 1.20788 0.85821 0.93869 0.94670 1.44134 1.48341 1.26746 1.12287 1.19119 1.38365 0.91626 0.89508 0.91689 1.25057 1.00541 0.96821 0.97181 1.70001 1.53479 1.25526 1.05358 0.86363 0.78092 0.83738 0.78497 1.20889 1.21579 1.21126 1.20806 0.91994 0.98312 0.86622 1.22405 0.99004 0.97850 0.98763 1.20603 0.92176 0.97806 1.00245 1.20877 0.99787 0.91560 1.10315 0.92750 0.92614 0.88347 0.84724 0.83131 0.76012 0.77178 0.87002 0.93222 0.91461 0.88803 0.95589 0.93420 0.95843 0.92195 0.92547 0.91961 0.85750 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.17 10.50 -19.68 -0.21 -3.38 16 3 C 0.13 1.37 6.69 -39.23 -0.26 1.10 16 4 C -0.14 -1.65 9.98 -39.45 -0.39 -2.04 16 5 C -0.03 -0.38 7.85 -39.41 -0.31 -0.68 16 6 C 0.10 1.10 5.92 -83.63 -0.49 0.61 16 7 N -0.64 -6.48 5.34 -11.36 -0.06 -6.54 16 8 C 0.55 7.48 7.71 -86.92 -0.67 6.81 16 9 S -0.62 -11.25 23.85 -107.50 -2.56 -13.81 16 10 N -0.67 -8.28 5.08 -55.46 -0.28 -8.56 16 11 C 0.15 2.37 2.18 -67.87 -0.15 2.22 16 12 C -0.14 -2.78 5.60 -26.59 -0.15 -2.93 16 13 C 0.17 4.20 5.30 -3.71 -0.02 4.18 16 14 N -0.59 -14.45 3.00 -172.32 -0.52 -14.96 16 15 C -0.26 -6.89 9.60 -15.06 -0.14 -7.04 16 16 H 0.07 1.70 7.88 -52.49 -0.41 1.28 16 17 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -26.14 11.05 55.49 0.61 -25.53 16 19 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 24 C -0.14 -2.17 5.55 -26.61 -0.15 -2.31 16 25 C -0.09 -0.82 9.96 -39.41 -0.39 -1.21 16 26 C -0.21 -1.90 9.03 -39.46 -0.36 -2.25 16 27 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.15 2.06 6.25 -49.44 -0.31 1.75 16 32 H 0.40 2.62 8.84 -40.82 -0.36 2.26 16 33 H 0.39 3.56 8.62 -40.82 -0.35 3.21 16 34 H 0.11 2.09 6.82 -51.93 -0.35 1.73 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.35 7.48 -51.93 -0.39 0.97 16 37 H 0.09 2.54 5.94 -51.93 -0.31 2.24 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.13 0.87 6.29 -52.48 -0.33 0.54 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.25 371.02 -11.60 -44.85 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.54 Total: 5.31 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.61 Total: 0.54 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.25 Total: -55.59 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: -0.21 Total: -3.38 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -2.56 Total: -13.81 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.25 -11.60 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730437465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.841 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds