Wall clock time and date at job start Tue Mar 31 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 116.99980 * 2 1 4 4 C 1.38719 * 119.98505 * 179.97438 * 3 2 1 5 5 C 1.38098 * 120.01212 * 180.02562 * 4 3 2 6 6 C 1.38843 * 119.98797 * 0.02562 * 5 4 3 7 7 N 1.40096 * 120.01898 * 179.97438 * 6 5 4 8 8 C 1.34778 * 119.99654 * 41.61845 * 7 6 5 9 9 S 1.71205 * 119.99973 * 5.64574 * 8 7 6 10 10 N 1.34777 * 119.99928 * 185.64149 * 8 7 6 11 11 C 1.46498 * 119.99851 * 180.02562 * 10 8 7 12 12 C 1.53074 * 109.44323 * 84.79791 * 11 10 8 13 13 C 1.53189 * 109.29426 * 181.23830 * 12 11 10 14 14 N 1.46922 * 108.89167 * 305.57065 * 13 12 11 15 15 C 1.36945 * 120.63590 * 233.52038 * 14 13 12 16 16 H 1.07997 * 119.99753 * 152.86020 * 15 14 13 17 17 C 1.38807 * 119.99573 * 332.85548 * 15 14 13 18 18 N 1.31617 * 120.00272 * 344.07137 * 17 15 14 19 19 Si 1.86803 * 120.00001 * 164.06526 * 17 15 14 20 20 H 1.48505 * 109.46832 * 60.00222 * 19 17 15 21 21 H 1.48496 * 109.47209 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46851 * 300.00541 * 19 17 15 23 23 C 1.46932 * 118.73565 * 53.54351 * 14 13 12 24 24 C 1.53041 * 109.45813 * 204.99817 * 11 10 8 25 25 C 1.38855 * 119.96910 * 0.25440 * 6 5 4 26 26 C 1.38095 * 119.97778 * 359.51074 * 25 6 5 27 27 H 1.08991 * 109.47096 * 299.99857 * 1 2 3 28 28 H 1.08999 * 109.46476 * 60.00101 * 1 2 3 29 29 H 1.08996 * 109.46597 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99060 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.00337 * 179.97438 * 5 4 3 32 32 H 0.96999 * 120.00363 * 221.62245 * 7 6 5 33 33 H 0.96998 * 119.99799 * 359.97438 * 10 8 7 34 34 H 1.08997 * 109.45898 * 324.97112 * 11 10 8 35 35 H 1.09000 * 109.39321 * 61.35632 * 12 11 10 36 36 H 1.09006 * 109.61880 * 301.24970 * 12 11 10 37 37 H 1.08999 * 109.58607 * 185.71872 * 13 12 11 38 38 H 1.08996 * 109.59117 * 65.43476 * 13 12 11 39 39 H 0.96997 * 120.00306 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.58737 * 66.17986 * 23 14 13 41 41 H 1.09007 * 109.58238 * 186.46351 * 23 14 13 42 42 H 1.09004 * 109.49436 * 58.67791 * 24 11 10 43 43 H 1.09004 * 109.52659 * 298.59648 * 24 11 10 44 44 H 1.07992 * 120.00760 * 179.72475 * 25 6 5 45 45 H 1.08004 * 119.98790 * 180.22924 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0592 2.5140 0.0011 6 6 3.3033 3.6786 0.0016 7 7 3.9392 4.9270 0.0027 8 6 5.0229 5.1318 -0.7720 9 16 5.5364 3.9173 -1.8641 10 7 5.7023 6.2927 -0.6871 11 6 6.8798 6.5156 -1.5296 12 6 6.4358 7.0396 -2.8976 13 6 7.6672 7.2421 -3.7861 14 7 8.6220 8.1111 -3.0850 15 6 9.1082 9.2416 -3.6860 16 1 9.4295 10.0780 -3.0831 17 6 9.1881 9.3121 -5.0699 18 7 9.1023 8.2144 -5.7909 19 14 9.4172 10.9652 -5.9092 20 1 10.6844 11.5847 -5.4447 21 1 9.4712 10.7702 -7.3803 22 1 8.2777 11.8548 -5.5697 23 6 9.0458 7.7441 -1.7268 24 6 7.7995 7.5392 -0.8600 25 6 1.9167 3.6056 0.0070 26 6 1.2905 2.3748 0.0015 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 4.0195 0.3779 0.0014 31 1 5.1378 2.5701 0.0019 32 1 3.5997 5.6438 0.5610 33 1 5.4111 6.9809 -0.0687 34 1 7.4164 5.5757 -1.6597 35 1 5.9186 7.9906 -2.7704 36 1 5.7643 6.3194 -3.3651 37 1 7.3681 7.7098 -4.7241 38 1 8.1327 6.2780 -3.9908 39 1 9.1577 8.2637 -6.7581 40 1 9.6229 6.8200 -1.7613 41 1 9.6583 8.5421 -1.3070 42 1 8.0962 7.1734 0.1231 43 1 7.2719 8.4869 -0.7515 44 1 1.3282 4.5110 0.0119 45 1 0.2120 2.3178 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730437465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:13 Heat of formation + Delta-G solvation = 18.018867 kcal Electronic energy + Delta-G solvation = -25938.830582 eV Core-core repulsion = 22275.911076 eV Total energy + Delta-G solvation = -3662.919506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42621 -40.50855 -39.38404 -37.81643 -35.96730 -34.05111 -32.16895 -31.82043 -31.42417 -29.83989 -28.07182 -26.92148 -25.37550 -24.03073 -23.96780 -23.29722 -22.74490 -21.10841 -19.62108 -19.32312 -18.91622 -18.48930 -17.18066 -17.06071 -16.81610 -16.57937 -16.27500 -15.83756 -15.54368 -15.33810 -15.23667 -14.79464 -14.71534 -14.48444 -14.16809 -14.02924 -13.67433 -13.50396 -13.20182 -12.97511 -12.82356 -12.64032 -12.56130 -12.29185 -12.26543 -12.07846 -12.00801 -11.81794 -11.78742 -11.49016 -11.35476 -10.63400 -10.43470 -10.04348 -9.12477 -8.84724 -8.71283 -8.22860 -7.84803 -5.31663 -0.07465 0.42356 0.61593 0.90971 1.42483 1.48362 1.50806 1.57533 2.40528 2.52100 2.52742 2.79619 3.30752 3.67755 3.78353 3.84279 3.97355 4.00785 4.20489 4.29031 4.37449 4.42592 4.45832 4.46117 4.52688 4.67562 4.72887 4.75521 4.79587 4.87261 4.98031 5.04719 5.06184 5.15164 5.28535 5.30817 5.32247 5.33914 5.47653 5.56729 5.65600 5.74631 5.77211 6.02157 6.37376 6.40343 6.48697 7.15018 7.86290 8.37801 9.21381 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.002204 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.149019 B =12701.655055 C =12954.695046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.124 3.876 4 C -0.163 4.163 5 C -0.042 4.042 6 C 0.078 3.922 7 N -0.609 5.609 8 C 0.580 3.420 9 S -0.716 6.716 10 N -0.647 5.647 11 C 0.163 3.837 12 C -0.125 4.125 13 C 0.185 3.815 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.075 0.925 17 C -0.056 4.056 18 N -0.938 5.938 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.299 1.299 22 H -0.276 1.276 23 C 0.142 3.858 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.202 4.202 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.427 0.573 33 H 0.418 0.582 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.057 0.943 38 H -0.011 1.011 39 H 0.249 0.751 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.157 0.843 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.150 -8.126 19.972 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.078 3.922 4 C -0.183 4.183 5 C -0.065 4.065 6 C -0.016 4.016 7 N -0.236 5.236 8 C 0.217 3.783 9 S -0.588 6.588 10 N -0.274 5.274 11 C 0.058 3.942 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.093 0.907 17 C -0.251 4.251 18 N -0.584 5.584 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.226 1.226 22 H -0.202 1.202 23 C 0.016 3.984 24 C -0.162 4.162 25 C -0.096 4.096 26 C -0.222 4.222 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.269 0.731 33 H 0.258 0.742 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.007 0.993 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.174 0.826 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -19.575 -9.077 19.024 28.766 hybrid contribution -0.148 1.732 -0.284 1.761 sum -19.724 -7.345 18.740 28.181 Atomic orbital electron populations 1.23364 0.76356 1.05562 1.02451 1.86080 1.23590 1.26881 1.88521 1.19207 0.92197 0.85027 0.95812 1.20323 0.92053 0.98166 1.07773 1.21100 1.00872 0.90818 0.93677 1.17400 0.91791 0.83265 1.09102 1.41960 1.25791 1.14301 1.41542 1.21802 0.83163 0.88384 0.84949 1.93822 1.79173 1.41115 1.44658 1.45117 1.27771 1.14225 1.40308 1.21220 0.83665 1.00262 0.89008 1.22243 0.98928 0.99578 0.95839 1.20436 0.87527 0.91579 0.94607 1.44375 1.48742 1.26294 1.13846 1.19540 1.36996 0.92619 0.89869 0.90706 1.25872 1.01296 0.99924 0.98056 1.70196 1.55585 1.27677 1.04966 0.85313 0.78432 0.79832 0.76690 1.19890 1.22569 1.20211 1.21018 0.94314 0.98067 0.85007 1.22183 0.96558 0.98328 0.99112 1.20929 0.91314 0.99175 0.98213 1.21236 1.01250 0.90793 1.08909 0.91060 0.91842 0.86601 0.85106 0.85259 0.73120 0.74183 0.89514 0.92373 0.92671 0.92458 0.99283 0.94238 0.96917 0.91173 0.88745 0.90363 0.82555 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.33 10.50 -93.33 -0.98 -7.31 16 3 C 0.12 2.51 6.69 22.50 0.15 2.66 16 4 C -0.16 -3.85 9.98 22.35 0.22 -3.63 16 5 C -0.04 -1.06 7.85 22.38 0.18 -0.88 16 6 C 0.08 1.59 5.92 38.11 0.23 1.81 16 7 N -0.61 -10.58 5.34 -189.87 -1.01 -11.60 16 8 C 0.58 14.75 7.71 179.05 1.38 16.13 16 9 S -0.72 -27.11 23.85 -56.49 -1.35 -28.45 16 10 N -0.65 -14.23 5.08 -329.39 -1.67 -15.90 16 11 C 0.16 5.06 2.18 45.03 0.10 5.16 16 12 C -0.13 -4.86 5.60 30.68 0.17 -4.69 16 13 C 0.19 9.29 5.30 86.36 0.46 9.75 16 14 N -0.61 -30.02 3.00 -699.10 -2.10 -32.12 16 15 C -0.26 -14.01 9.60 84.03 0.81 -13.20 16 16 H 0.08 3.82 7.88 -2.91 -0.02 3.79 16 17 C -0.06 -3.17 4.95 84.86 0.42 -2.75 16 18 N -0.94 -56.91 11.05 21.65 0.24 -56.67 16 19 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.14 5.47 6.52 86.36 0.56 6.04 16 24 C -0.12 -3.40 5.55 30.67 0.17 -3.23 16 25 C -0.08 -1.17 9.96 22.38 0.22 -0.95 16 26 C -0.20 -3.14 9.03 22.35 0.20 -2.93 16 27 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 28 H 0.06 0.49 7.66 -2.39 -0.02 0.48 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 31 H 0.13 3.77 6.25 -4.84 -0.03 3.74 16 32 H 0.43 3.59 8.84 -92.71 -0.82 2.77 16 33 H 0.42 5.53 8.62 -92.71 -0.80 4.73 16 34 H 0.09 3.27 6.82 -2.39 -0.02 3.26 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 2.28 7.48 -2.38 -0.02 2.26 16 37 H 0.06 3.28 5.94 -2.39 -0.01 3.27 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 2.54 7.93 -2.38 -0.02 2.53 16 42 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 43 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.16 1.47 6.29 -2.91 -0.02 1.45 16 Total: -1.00 -78.37 371.02 0.93 -77.44 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -0.61 Total: 17.23 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 6.38 Total: 10.55 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -4.55 Total: -116.29 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.98 Total: -7.31 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -27.11 SS G_CDS: -1.35 Total: -28.45 kcal Total: -78.37 0.93 -77.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730437465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.457 kcal (2) G-P(sol) polarization free energy of solvation -78.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds