Wall clock time and date at job start Tue Mar 31 2020 18:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35897 * 117.00214 * 2 1 4 4 C 1.38811 * 120.01765 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.08586 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.12399 * 359.67737 * 5 4 3 7 7 C 1.38895 * 120.03882 * 0.59699 * 6 5 4 8 8 N 1.39892 * 120.04247 * 179.70071 * 7 6 5 9 9 C 1.34777 * 119.99730 * 221.37629 * 8 7 6 10 10 S 1.71202 * 120.00305 * 5.63697 * 9 8 7 11 11 N 1.34774 * 120.00053 * 185.64443 * 9 8 7 12 12 C 1.46497 * 120.00365 * 179.97438 * 11 9 8 13 13 C 1.53355 * 109.41636 * 275.12181 * 12 11 9 14 14 C 1.53188 * 109.14998 * 178.67008 * 13 12 11 15 15 N 1.46926 * 108.88980 * 54.58001 * 14 13 12 16 16 C 1.36940 * 120.62979 * 126.29597 * 15 14 13 17 17 H 1.08005 * 120.00091 * 332.87085 * 16 15 14 18 18 C 1.38814 * 120.00154 * 152.86470 * 16 15 14 19 19 N 1.31620 * 120.00051 * 344.05277 * 18 16 15 20 20 Si 1.86800 * 120.00178 * 164.05095 * 18 16 15 21 21 H 1.48505 * 109.46846 * 60.00129 * 20 18 16 22 22 H 1.48501 * 109.47353 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47205 * 300.00221 * 20 18 16 24 24 C 1.46924 * 118.74485 * 306.32177 * 15 14 13 25 25 C 1.53037 * 109.46365 * 154.99793 * 12 11 9 26 26 C 1.38587 * 120.02327 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47005 * 299.99555 * 1 2 3 28 28 H 1.08996 * 109.47335 * 59.99837 * 1 2 3 29 29 H 1.09007 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.95604 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.93426 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.97829 * 180.32158 * 6 5 4 33 33 H 0.96991 * 119.99994 * 41.37004 * 8 7 6 34 34 H 0.97001 * 119.99835 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.45897 * 35.02068 * 12 11 9 36 36 H 1.09006 * 109.68199 * 58.71247 * 13 12 11 37 37 H 1.08995 * 109.47795 * 298.51419 * 13 12 11 38 38 H 1.09000 * 109.59076 * 294.72807 * 14 13 12 39 39 H 1.09001 * 109.59058 * 174.43573 * 14 13 12 40 40 H 0.96998 * 119.99855 * 180.02562 * 19 18 16 41 41 H 1.08990 * 109.59322 * 173.39592 * 24 15 14 42 42 H 1.09006 * 109.58202 * 293.68014 * 24 15 14 43 43 H 1.08999 * 109.49850 * 61.43227 * 25 12 11 44 44 H 1.09000 * 109.52211 * 301.35010 * 25 12 11 45 45 H 1.07995 * 120.05889 * 0.04704 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9162 3.6071 0.0011 6 6 3.2957 3.6840 0.0078 7 6 4.0568 2.5222 0.0015 8 7 5.4536 2.6000 0.0020 9 6 6.1751 1.7672 -0.7740 10 16 5.3831 0.7138 -1.8668 11 7 7.5202 1.7635 -0.6898 12 6 8.3045 0.8579 -1.5329 13 6 8.4017 -0.5141 -0.8546 14 6 9.1944 -1.4655 -1.7564 15 7 10.4922 -0.8525 -2.0702 16 6 11.6589 -1.5298 -1.8349 17 1 11.7012 -2.2789 -1.0579 18 6 12.7872 -1.2538 -2.5949 19 7 12.6727 -0.5903 -3.7259 20 14 14.4681 -1.8238 -2.0126 21 1 14.4730 -3.3036 -1.8876 22 1 15.5003 -1.4062 -2.9952 23 1 14.7673 -1.2145 -0.6919 24 6 10.5147 0.5012 -2.6409 25 6 9.7087 1.4333 -1.7308 26 6 3.4299 1.2839 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2119 2.3183 0.0005 31 1 1.3259 4.5115 0.0011 32 1 3.7824 4.6481 0.0135 33 1 5.9027 3.2533 0.5607 34 1 7.9690 2.3605 -0.0708 35 1 7.8166 0.7496 -2.5015 36 1 7.4011 -0.9154 -0.6929 37 1 8.9118 -0.4108 0.1030 38 1 8.6407 -1.6411 -2.6787 39 1 9.3528 -2.4119 -1.2394 40 1 13.4611 -0.3978 -4.2572 41 1 11.5441 0.8536 -2.7053 42 1 10.0709 0.4855 -3.6364 43 1 10.2065 1.5185 -0.7649 44 1 9.6370 2.4187 -2.1912 45 1 4.0193 0.3790 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730438843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:18 Heat of formation + Delta-G solvation = 39.492719 kcal Electronic energy + Delta-G solvation = -26110.235908 eV Core-core repulsion = 22448.247578 eV Total energy + Delta-G solvation = -3661.988330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58645 -39.40216 -38.17566 -36.65237 -34.80332 -32.36622 -30.88224 -30.44076 -29.76385 -28.91442 -27.41925 -25.37513 -24.24709 -22.62184 -22.55569 -22.03040 -21.71781 -19.56411 -19.00463 -18.24413 -16.94824 -16.55965 -16.41828 -16.18358 -15.85516 -15.42646 -15.10135 -14.83903 -14.60243 -13.97239 -13.74853 -13.66354 -13.53119 -13.09388 -12.94938 -12.55615 -12.44838 -12.38932 -12.03212 -11.52770 -11.39324 -11.18061 -11.12085 -11.05236 -10.89394 -10.74067 -10.60548 -10.34690 -10.14921 -9.87816 -9.64066 -9.53091 -8.75994 -8.49300 -8.31854 -7.61964 -6.93535 -6.71251 -5.81138 -3.23244 0.81815 1.31316 1.59933 1.98211 2.51242 3.12951 3.36919 3.42791 3.43566 3.49355 3.60832 4.47660 4.60472 4.81964 4.87684 4.92484 4.93995 5.14136 5.17538 5.25880 5.31001 5.34957 5.40492 5.48588 5.54262 5.78136 5.87248 5.99648 6.01847 6.13531 6.22275 6.24035 6.29288 6.34692 6.46609 6.52760 6.58775 6.72948 6.78869 6.95728 7.00494 7.23610 7.28261 7.30195 7.60508 7.76740 8.42240 9.18667 9.81725 10.37805 11.27667 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.002331 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.427886 B =12009.541141 C =12567.416272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.135 3.865 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.165 4.165 7 C 0.176 3.824 8 N -0.643 5.643 9 C 0.553 3.447 10 S -0.613 6.613 11 N -0.664 5.664 12 C 0.146 3.854 13 C -0.136 4.136 14 C 0.150 3.850 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.904 3.096 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.175 3.825 25 C -0.148 4.148 26 C -0.105 4.105 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.406 0.594 34 H 0.394 0.606 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.255 0.745 41 H 0.097 0.903 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 10.905 11.094 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.088 3.912 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.186 4.186 7 C 0.082 3.918 8 N -0.271 5.271 9 C 0.195 3.805 10 S -0.483 6.483 11 N -0.289 5.289 12 C 0.043 3.957 13 C -0.177 4.177 14 C 0.023 3.977 15 N -0.316 5.316 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.734 3.266 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.048 3.952 25 C -0.188 4.188 26 C -0.128 4.128 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.243 0.757 34 H 0.230 0.770 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.438 9.900 10.111 25.687 hybrid contribution 1.500 1.180 1.309 2.315 sum -19.938 11.081 11.420 25.509 Atomic orbital electron populations 1.23044 0.78605 1.03913 1.01121 1.86120 1.21066 1.26657 1.88598 1.18648 0.91595 0.84226 0.96694 1.21238 1.00002 0.92357 1.09310 1.20583 0.93477 0.97077 0.98389 1.20745 0.94053 0.96599 1.07249 1.16936 0.80202 0.93522 1.01139 1.42191 1.05283 1.36339 1.43261 1.22517 0.85300 0.86525 0.86201 1.93528 1.70855 1.44137 1.39802 1.45761 1.02821 1.39715 1.40606 1.21809 0.90811 0.88268 0.94795 1.22413 1.00778 0.94939 0.99561 1.20849 0.86956 0.94105 0.95812 1.44116 1.00726 1.12661 1.74059 1.19171 0.87682 1.18951 1.12284 0.91584 1.25045 0.98995 1.00640 0.95084 1.69988 1.28509 1.44400 1.12038 0.86346 0.83915 0.78577 0.77777 1.20837 1.21631 1.21141 1.20781 0.99802 0.82967 0.91673 1.22619 0.93854 0.99911 1.02402 1.20523 0.91890 0.98636 1.01746 0.92849 0.92661 0.88295 0.85511 0.85464 0.85825 0.75652 0.77021 0.86977 0.91314 0.92750 0.95524 0.92427 0.93506 0.88484 0.95777 0.92253 0.92672 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.71 10.49 -19.42 -0.20 -3.92 16 3 C 0.14 1.63 6.68 -39.24 -0.26 1.37 16 4 C -0.21 -1.97 9.04 -39.39 -0.36 -2.33 16 5 C -0.08 -0.65 10.03 -39.63 -0.40 -1.04 16 6 C -0.17 -1.53 9.97 -39.37 -0.39 -1.92 16 7 C 0.18 2.01 5.91 -83.73 -0.49 1.51 16 8 N -0.64 -6.62 5.33 -11.42 -0.06 -6.68 16 9 C 0.55 7.53 7.71 -86.92 -0.67 6.86 16 10 S -0.61 -11.15 23.87 -107.50 -2.57 -13.72 16 11 N -0.66 -8.40 5.08 -55.33 -0.28 -8.68 16 12 C 0.15 2.39 2.18 -67.73 -0.15 2.24 16 13 C -0.14 -2.41 5.62 -26.45 -0.15 -2.55 16 14 C 0.15 3.17 6.50 -3.71 -0.02 3.15 16 15 N -0.59 -14.51 3.00 -172.32 -0.52 -15.03 16 16 C -0.25 -6.76 9.60 -15.06 -0.14 -6.91 16 17 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 18 C 0.00 0.02 4.95 -17.43 -0.09 -0.07 16 19 N -0.90 -25.78 11.05 55.49 0.61 -25.17 16 20 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 25 C -0.15 -2.56 5.55 -26.61 -0.15 -2.71 16 26 C -0.11 -1.41 7.79 -39.24 -0.31 -1.71 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.88 6.29 -52.49 -0.33 0.55 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.41 2.67 8.84 -40.82 -0.36 2.31 16 34 H 0.39 3.72 8.62 -40.82 -0.35 3.37 16 35 H 0.11 2.13 6.82 -51.93 -0.35 1.78 16 36 H 0.07 1.22 7.50 -51.93 -0.39 0.83 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.10 2.48 5.94 -51.93 -0.31 2.17 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.15 2.37 6.25 -49.48 -0.31 2.06 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -33.12 371.07 -11.60 -44.72 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.54 Total: 5.49 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.61 Total: 1.04 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.25 Total: -55.55 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: -11.15 SS G_CDS: -2.57 Total: -13.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.12 -11.60 -44.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.210 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds