Wall clock time and date at job start Tue Mar 31 2020 18:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35897 * 117.00214 * 2 1 4 4 C 1.38811 * 120.01765 * 0.02562 * 3 2 1 5 5 C 1.38174 * 120.08586 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.12399 * 359.67737 * 5 4 3 7 7 C 1.38895 * 120.03882 * 0.59699 * 6 5 4 8 8 N 1.39892 * 120.04247 * 179.70071 * 7 6 5 9 9 C 1.34777 * 119.99730 * 221.37629 * 8 7 6 10 10 S 1.71202 * 120.00305 * 5.63697 * 9 8 7 11 11 N 1.34774 * 120.00053 * 185.64443 * 9 8 7 12 12 C 1.46497 * 120.00365 * 179.97438 * 11 9 8 13 13 C 1.53355 * 109.41636 * 275.12181 * 12 11 9 14 14 C 1.53188 * 109.14998 * 178.67008 * 13 12 11 15 15 N 1.46926 * 108.88980 * 54.58001 * 14 13 12 16 16 C 1.36940 * 120.62979 * 126.29597 * 15 14 13 17 17 H 1.08005 * 120.00091 * 332.87085 * 16 15 14 18 18 C 1.38814 * 120.00154 * 152.86470 * 16 15 14 19 19 N 1.31620 * 120.00051 * 344.05277 * 18 16 15 20 20 Si 1.86800 * 120.00178 * 164.05095 * 18 16 15 21 21 H 1.48505 * 109.46846 * 60.00129 * 20 18 16 22 22 H 1.48501 * 109.47353 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47205 * 300.00221 * 20 18 16 24 24 C 1.46924 * 118.74485 * 306.32177 * 15 14 13 25 25 C 1.53037 * 109.46365 * 154.99793 * 12 11 9 26 26 C 1.38587 * 120.02327 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47005 * 299.99555 * 1 2 3 28 28 H 1.08996 * 109.47335 * 59.99837 * 1 2 3 29 29 H 1.09007 * 109.47415 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.95604 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.93426 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.97829 * 180.32158 * 6 5 4 33 33 H 0.96991 * 119.99994 * 41.37004 * 8 7 6 34 34 H 0.97001 * 119.99835 * 359.97438 * 11 9 8 35 35 H 1.08995 * 109.45897 * 35.02068 * 12 11 9 36 36 H 1.09006 * 109.68199 * 58.71247 * 13 12 11 37 37 H 1.08995 * 109.47795 * 298.51419 * 13 12 11 38 38 H 1.09000 * 109.59076 * 294.72807 * 14 13 12 39 39 H 1.09001 * 109.59058 * 174.43573 * 14 13 12 40 40 H 0.96998 * 119.99855 * 180.02562 * 19 18 16 41 41 H 1.08990 * 109.59322 * 173.39592 * 24 15 14 42 42 H 1.09006 * 109.58202 * 293.68014 * 24 15 14 43 43 H 1.08999 * 109.49850 * 61.43227 * 25 12 11 44 44 H 1.09000 * 109.52211 * 301.35010 * 25 12 11 45 45 H 1.07995 * 120.05889 * 0.04704 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9162 3.6071 0.0011 6 6 3.2957 3.6840 0.0078 7 6 4.0568 2.5222 0.0015 8 7 5.4536 2.6000 0.0020 9 6 6.1751 1.7672 -0.7740 10 16 5.3831 0.7138 -1.8668 11 7 7.5202 1.7635 -0.6898 12 6 8.3045 0.8579 -1.5329 13 6 8.4017 -0.5141 -0.8546 14 6 9.1944 -1.4655 -1.7564 15 7 10.4922 -0.8525 -2.0702 16 6 11.6589 -1.5298 -1.8349 17 1 11.7012 -2.2789 -1.0579 18 6 12.7872 -1.2538 -2.5949 19 7 12.6727 -0.5903 -3.7259 20 14 14.4681 -1.8238 -2.0126 21 1 14.4730 -3.3036 -1.8876 22 1 15.5003 -1.4062 -2.9952 23 1 14.7673 -1.2145 -0.6919 24 6 10.5147 0.5012 -2.6409 25 6 9.7087 1.4333 -1.7308 26 6 3.4299 1.2839 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.2119 2.3183 0.0005 31 1 1.3259 4.5115 0.0011 32 1 3.7824 4.6481 0.0135 33 1 5.9027 3.2533 0.5607 34 1 7.9690 2.3605 -0.0708 35 1 7.8166 0.7496 -2.5015 36 1 7.4011 -0.9154 -0.6929 37 1 8.9118 -0.4108 0.1030 38 1 8.6407 -1.6411 -2.6787 39 1 9.3528 -2.4119 -1.2394 40 1 13.4611 -0.3978 -4.2572 41 1 11.5441 0.8536 -2.7053 42 1 10.0709 0.4855 -3.6364 43 1 10.2065 1.5185 -0.7649 44 1 9.6370 2.4187 -2.1912 45 1 4.0193 0.3790 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730438843.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:17 Heat of formation + Delta-G solvation = 18.751900 kcal Electronic energy + Delta-G solvation = -26111.135298 eV Core-core repulsion = 22448.247578 eV Total energy + Delta-G solvation = -3662.887720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.45208 -40.49302 -39.35363 -37.85232 -36.09274 -34.09587 -32.07553 -31.63096 -31.32155 -30.02066 -28.04492 -27.06438 -25.54348 -23.99162 -23.81531 -23.23167 -22.86428 -21.11978 -19.90596 -19.48439 -18.59495 -17.80546 -17.18420 -17.01672 -16.85950 -16.56757 -16.35322 -16.26069 -15.81348 -15.48153 -15.33167 -14.80545 -14.72296 -14.46891 -14.18038 -14.03145 -13.50128 -13.21719 -13.13120 -12.98606 -12.72736 -12.61818 -12.56068 -12.31399 -12.28328 -12.09089 -12.00162 -11.88567 -11.83182 -11.56362 -11.36143 -10.75776 -10.53234 -9.71528 -9.14655 -8.92574 -8.72087 -8.23156 -7.87126 -5.32633 -0.15253 0.54102 0.61049 0.85540 1.37297 1.49402 1.50481 1.57750 2.31920 2.52135 2.61930 2.82763 3.28615 3.65587 3.78744 3.94211 3.94766 4.13901 4.24034 4.25132 4.31552 4.42049 4.44747 4.45903 4.52171 4.60754 4.63747 4.74587 4.77738 4.80585 4.93492 5.05316 5.12800 5.20946 5.22714 5.29910 5.37622 5.45529 5.48047 5.54640 5.64105 5.68331 5.74903 6.02183 6.33892 6.39155 6.54657 7.14753 7.84121 8.36163 9.19568 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.002331 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.427886 B =12009.541141 C =12567.416272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.115 3.885 4 C -0.205 4.205 5 C -0.072 4.072 6 C -0.157 4.157 7 C 0.156 3.844 8 N -0.615 5.615 9 C 0.580 3.420 10 S -0.707 6.707 11 N -0.647 5.647 12 C 0.163 3.837 13 C -0.119 4.119 14 C 0.148 3.852 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.275 1.275 24 C 0.178 3.822 25 C -0.129 4.129 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.429 0.571 34 H 0.417 0.583 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.008 0.992 39 H 0.056 0.944 40 H 0.251 0.749 41 H 0.070 0.930 42 H -0.005 1.005 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.435 13.736 13.493 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.090 4.090 6 C -0.178 4.178 7 C 0.062 3.938 8 N -0.242 5.242 9 C 0.217 3.783 10 S -0.579 6.579 11 N -0.274 5.274 12 C 0.058 3.942 13 C -0.160 4.160 14 C 0.022 3.978 15 N -0.332 5.332 16 C -0.393 4.393 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.201 1.201 24 C 0.052 3.948 25 C -0.169 4.169 26 C -0.155 4.155 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.170 0.830 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.271 0.729 34 H 0.257 0.743 35 H 0.105 0.895 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.013 0.987 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.642 12.786 12.587 28.889 hybrid contribution 1.702 0.316 0.600 1.832 sum -20.940 13.102 13.187 28.001 Atomic orbital electron populations 1.23324 0.76409 1.05299 1.02404 1.86075 1.23526 1.27347 1.88822 1.18869 0.91519 0.85226 0.97497 1.21581 1.01274 0.91762 1.07790 1.21081 0.93537 0.97984 0.96432 1.21101 0.94442 0.96774 1.05482 1.17141 0.80333 0.93806 1.02479 1.41993 1.05179 1.35258 1.41810 1.21836 0.85170 0.85831 0.85421 1.93786 1.72438 1.47943 1.43758 1.45175 1.02223 1.39475 1.40484 1.21280 0.90500 0.88241 0.94150 1.22164 0.99962 0.94858 0.98993 1.20892 0.86049 0.95122 0.95725 1.44363 1.01139 1.13492 1.74194 1.19498 0.88722 1.18981 1.12055 0.91460 1.25798 1.02303 1.01275 0.95195 1.70159 1.29010 1.45863 1.13170 0.85315 0.79481 0.78124 0.77342 1.20468 1.22083 1.20089 1.20590 0.98934 0.83547 0.91754 1.22306 0.93250 0.99464 1.01832 1.20429 0.92726 0.98337 1.04003 0.90948 0.91798 0.87090 0.82962 0.81800 0.82825 0.72875 0.74258 0.89525 0.91399 0.91666 0.97386 0.92530 0.93991 0.91213 0.98669 0.90843 0.90145 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.39 10.49 -92.39 -0.97 -9.36 16 3 C 0.12 2.75 6.68 22.49 0.15 2.90 16 4 C -0.20 -3.35 9.04 22.39 0.20 -3.15 16 5 C -0.07 -0.93 10.03 22.24 0.22 -0.71 16 6 C -0.16 -2.34 9.97 22.41 0.22 -2.11 16 7 C 0.16 3.30 5.91 38.15 0.23 3.52 16 8 N -0.61 -11.20 5.33 -190.04 -1.01 -12.21 16 9 C 0.58 15.11 7.71 179.06 1.38 16.50 16 10 S -0.71 -26.74 23.87 -56.49 -1.35 -28.09 16 11 N -0.65 -14.94 5.08 -328.96 -1.67 -16.61 16 12 C 0.16 5.21 2.18 45.12 0.10 5.31 16 13 C -0.12 -4.19 5.62 30.78 0.17 -4.02 16 14 C 0.15 6.47 6.50 86.36 0.56 7.03 16 15 N -0.61 -30.43 3.00 -699.11 -2.10 -32.53 16 16 C -0.26 -14.32 9.60 84.03 0.81 -13.51 16 17 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 18 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 19 N -0.94 -54.80 11.05 21.65 0.24 -54.56 16 20 Si 0.97 44.29 29.58 68.60 2.03 46.32 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.18 8.33 5.31 86.36 0.46 8.79 16 25 C -0.13 -4.30 5.55 30.67 0.17 -4.13 16 26 C -0.13 -3.59 7.79 22.49 0.18 -3.42 16 27 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 28 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.15 1.61 6.29 -2.91 -0.02 1.59 16 31 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.43 3.96 8.84 -92.71 -0.82 3.14 16 34 H 0.42 6.24 8.62 -92.71 -0.80 5.45 16 35 H 0.09 3.36 6.82 -2.39 -0.02 3.34 16 36 H 0.07 2.44 7.50 -2.38 -0.02 2.42 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 41 H 0.07 3.66 5.94 -2.39 -0.01 3.64 16 42 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.12 3.99 6.25 -4.83 -0.03 3.96 16 Total: -1.00 -77.41 371.07 0.94 -76.47 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.61 Total: 18.55 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.38 Total: 12.02 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.54 Total: -115.91 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.97 Total: -9.36 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -26.74 SS G_CDS: -1.35 Total: -28.09 kcal Total: -77.41 0.94 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730438843.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.220 kcal (2) G-P(sol) polarization free energy of solvation -77.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds