Wall clock time and date at job start Tue Mar 31 2020 19:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42891 * 113.99845 * 2 1 4 4 C 1.53001 * 109.47165 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47315 * 64.99646 * 4 3 2 6 6 C 1.46501 * 119.99805 * 92.53465 * 5 4 3 7 7 C 1.53004 * 109.46632 * 72.59758 * 6 5 4 8 8 C 1.50700 * 109.47033 * 179.97438 * 7 6 5 9 9 O 1.20826 * 120.00063 * 0.02562 * 8 7 6 10 10 O 1.34227 * 120.00430 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00589 * 180.02562 * 10 8 7 12 12 C 1.34777 * 120.00155 * 272.54185 * 5 4 3 13 13 O 1.21545 * 120.00177 * 2.73449 * 12 5 4 14 14 C 1.47886 * 119.99901 * 182.72860 * 12 5 4 15 15 C 1.39927 * 120.02237 * 29.12805 * 14 12 5 16 16 C 1.38335 * 120.35438 * 179.73695 * 15 14 12 17 17 C 1.37745 * 120.40886 * 0.55891 * 16 15 14 18 18 C 1.40746 * 120.04518 * 359.69544 * 17 16 15 19 19 C 1.41435 * 120.17916 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99781 * 32.89516 * 19 18 17 21 21 C 1.39942 * 120.00394 * 212.89303 * 19 18 17 22 22 N 1.30825 * 119.99395 * 6.63852 * 21 19 18 23 23 Si 1.86793 * 120.00112 * 186.64056 * 21 19 18 24 24 H 1.48495 * 109.47451 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47203 * 119.99962 * 23 21 19 26 26 H 1.48501 * 109.46939 * 239.99778 * 23 21 19 27 27 C 1.38996 * 120.02854 * 209.39649 * 14 12 5 28 28 H 1.08999 * 109.47363 * 59.99801 * 1 2 3 29 29 H 1.08993 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46712 * 300.00035 * 1 2 3 31 31 H 1.09002 * 109.47843 * 60.00214 * 3 2 1 32 32 H 1.08997 * 109.47481 * 299.99699 * 3 2 1 33 33 H 1.09000 * 109.47230 * 304.99917 * 4 3 2 34 34 H 1.08994 * 109.47495 * 184.99912 * 4 3 2 35 35 H 1.08994 * 109.47817 * 312.59825 * 6 5 4 36 36 H 1.09002 * 109.47520 * 192.59357 * 6 5 4 37 37 H 1.08992 * 109.47314 * 299.99730 * 7 6 5 38 38 H 1.08998 * 109.47198 * 60.00271 * 7 6 5 39 39 H 1.08997 * 109.47330 * 180.02562 * 11 10 8 40 40 H 1.09011 * 109.47043 * 299.99809 * 11 10 8 41 41 H 1.08996 * 109.47420 * 59.99276 * 11 10 8 42 42 H 1.07998 * 119.82074 * 359.97438 * 15 14 12 43 43 H 1.08002 * 119.79259 * 180.27732 * 16 15 14 44 44 H 1.08008 * 119.97464 * 179.72094 * 17 16 15 45 45 H 0.97007 * 119.99761 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.19912 * 359.96101 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3397 1.4031 -2.3974 7 6 5.6821 2.0844 -2.1239 8 6 6.0569 2.9468 -3.3016 9 8 5.3251 3.0104 -4.2609 10 8 7.2031 3.6451 -3.2844 11 6 7.4994 4.4548 -4.4526 12 6 4.0458 -0.7780 -1.3516 13 8 3.6966 -1.4751 -0.4192 14 6 4.5475 -1.4026 -2.5946 15 6 5.4777 -0.7265 -3.3919 16 6 5.9557 -1.3067 -4.5531 17 6 5.5132 -2.5512 -4.9441 18 6 4.5738 -3.2442 -4.1578 19 6 4.1179 -4.5223 -4.5563 20 1 4.7813 -5.1921 -5.0834 21 6 2.8074 -4.9193 -4.2675 22 7 1.9650 -4.0647 -3.7464 23 14 2.2611 -6.6692 -4.6259 24 1 3.3936 -7.4316 -5.2101 25 1 1.8245 -7.3197 -3.3643 26 1 1.1307 -6.6475 -5.5886 27 6 4.0913 -2.6593 -2.9748 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1764 0.0889 35 1 3.5720 2.1615 -2.5508 36 1 4.4219 0.7836 -3.2904 37 1 5.5999 2.7040 -1.2310 38 1 6.4498 1.3260 -1.9705 39 1 8.4518 4.9650 -4.3090 40 1 7.5598 3.8144 -5.3327 41 1 6.7092 5.1922 -4.5935 42 1 5.8272 0.2519 -3.0970 43 1 6.6769 -0.7787 -5.1593 44 1 5.8877 -2.9956 -5.8545 45 1 1.0567 -4.3399 -3.5459 46 1 3.3706 -3.1832 -2.3644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733221965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:04 Heat of formation + Delta-G solvation = -119.748492 kcal Electronic energy + Delta-G solvation = -29827.030731 eV Core-core repulsion = 25683.091562 eV Total energy + Delta-G solvation = -4143.939169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66786 -39.60526 -37.62066 -36.83322 -36.72801 -35.50223 -33.63401 -31.97418 -30.47580 -29.46853 -28.99135 -27.75036 -26.14065 -25.32129 -24.26446 -23.36039 -21.34582 -21.02051 -20.67728 -18.76197 -17.89113 -17.36097 -16.85836 -16.66384 -16.32810 -16.08996 -15.61075 -15.43327 -15.15777 -14.93664 -14.67842 -14.02631 -13.82024 -13.65012 -13.23980 -13.19157 -12.87863 -12.60330 -12.49844 -12.37718 -12.28030 -12.06541 -11.87261 -11.58831 -11.54005 -11.23638 -11.10655 -11.02701 -10.90992 -10.88446 -10.57258 -10.41306 -10.28579 -9.95430 -9.58713 -9.43009 -9.22837 -8.84140 -8.33568 -7.55923 -7.35513 -6.67334 -4.39217 2.15326 2.29874 2.56268 2.84561 3.12122 3.15053 3.17105 3.45229 3.85565 3.98461 4.06064 4.65754 4.68159 4.90365 4.93088 4.95794 5.04713 5.20062 5.24476 5.31272 5.31881 5.38521 5.46210 5.53512 5.56003 5.58856 5.69201 5.74694 5.92813 6.03063 6.13254 6.20316 6.29245 6.31468 6.70500 6.91563 7.04238 7.06342 7.26971 7.43320 7.45314 7.65961 7.69605 7.79604 7.90899 8.06504 8.22582 8.55452 8.87234 8.88289 9.00992 10.27762 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009561 B = 0.004253 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.808413 B = 6582.556487 C = 8915.283677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.360 6.360 3 C 0.043 3.957 4 C 0.118 3.882 5 N -0.613 5.613 6 C 0.094 3.906 7 C -0.137 4.137 8 C 0.465 3.535 9 O -0.499 6.499 10 O -0.362 6.362 11 C 0.035 3.965 12 C 0.571 3.429 13 O -0.520 6.520 14 C -0.128 4.128 15 C -0.231 4.231 16 C -0.102 4.102 17 C -0.203 4.203 18 C 0.101 3.899 19 C -0.465 4.465 20 H 0.079 0.921 21 C 0.072 3.928 22 N -0.800 5.800 23 Si 0.913 3.087 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.081 4.081 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.281 0.719 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 15.483 4.307 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C -0.036 4.036 4 C -0.005 4.005 5 N -0.348 5.348 6 C -0.030 4.030 7 C -0.176 4.176 8 C 0.307 3.693 9 O -0.385 6.385 10 O -0.279 6.279 11 C -0.059 4.059 12 C 0.362 3.638 13 O -0.395 6.395 14 C -0.131 4.131 15 C -0.250 4.250 16 C -0.120 4.120 17 C -0.223 4.223 18 C 0.099 3.901 19 C -0.495 4.495 20 H 0.097 0.903 21 C -0.145 4.145 22 N -0.426 5.426 23 Si 0.738 3.262 24 H -0.185 1.185 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.101 4.101 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.974 14.960 4.592 15.929 hybrid contribution -0.618 -0.111 -0.459 0.778 sum 2.356 14.848 4.133 15.592 Atomic orbital electron populations 1.22693 0.82053 1.02725 0.98903 1.88218 1.18569 1.25967 1.95058 1.22959 0.94929 0.86081 0.99589 1.21399 0.92209 0.98491 0.88448 1.47699 1.68126 1.06110 1.12824 1.22114 0.92643 0.95897 0.92300 1.21974 1.01502 0.98904 0.95235 1.23636 0.78720 0.78154 0.88793 1.90711 1.50977 1.61645 1.35203 1.86505 1.40621 1.56759 1.44030 1.23252 1.01709 0.94220 0.86692 1.18817 0.76349 0.80586 0.88026 1.90713 1.47290 1.61293 1.40179 1.19504 1.01562 0.97079 0.94935 1.21020 1.04721 1.00414 0.98889 1.20465 0.99333 0.95785 0.96442 1.21206 1.05285 0.95575 1.00221 1.17612 0.90005 0.92861 0.89633 1.19573 0.96910 0.99845 1.33146 0.90254 1.25893 0.96628 0.99022 0.92984 1.69758 1.05572 1.35061 1.32170 0.86184 0.79168 0.82058 0.78829 1.18525 1.19759 1.20030 1.21598 0.99846 0.92757 0.95913 0.94596 0.89705 0.94874 0.93206 0.93574 0.89227 0.89649 0.91075 0.84598 0.87638 0.86488 0.88262 0.91692 0.91995 0.87285 0.89055 0.88604 0.90838 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -6.46 9.09 -50.62 -0.46 -6.92 16 3 C 0.04 0.58 6.28 37.16 0.23 0.82 16 4 C 0.12 1.59 5.79 -4.04 -0.02 1.57 16 5 N -0.61 -10.31 2.52 -174.78 -0.44 -10.75 16 6 C 0.09 1.39 4.17 -4.04 -0.02 1.38 16 7 C -0.14 -1.60 5.06 -27.88 -0.14 -1.75 16 8 C 0.46 5.96 7.92 36.01 0.29 6.24 16 9 O -0.50 -7.81 15.73 -18.75 -0.29 -8.11 16 10 O -0.36 -4.07 10.56 -39.25 -0.41 -4.49 16 11 C 0.04 0.30 10.56 101.05 1.07 1.36 16 12 C 0.57 12.56 7.09 -12.31 -0.09 12.47 16 13 O -0.52 -12.99 15.15 -10.07 -0.15 -13.14 16 14 C -0.13 -3.02 5.47 -105.03 -0.57 -3.60 16 15 C -0.23 -4.86 7.41 -38.91 -0.29 -5.14 16 16 C -0.10 -2.20 10.01 -39.73 -0.40 -2.60 16 17 C -0.20 -4.87 9.78 -38.81 -0.38 -5.25 16 18 C 0.10 2.70 5.51 -106.88 -0.59 2.11 16 19 C -0.46 -12.40 9.05 -37.73 -0.34 -12.74 16 20 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 21 C 0.07 1.84 5.30 -17.34 -0.09 1.75 16 22 N -0.80 -21.45 10.92 55.55 0.61 -20.84 16 23 Si 0.91 19.23 29.56 -169.99 -5.03 14.21 16 24 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 27 C -0.08 -2.18 8.17 -38.44 -0.31 -2.49 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.33 7.54 -51.93 -0.39 0.94 16 34 H 0.09 0.79 7.17 -51.93 -0.37 0.42 16 35 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.14 2.46 4.09 -51.93 -0.21 2.25 16 37 H 0.11 0.92 7.30 -51.93 -0.38 0.54 16 38 H 0.12 1.40 6.82 -51.93 -0.35 1.04 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.11 1.93 2.88 -52.49 -0.15 1.78 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 45 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 46 H 0.13 3.84 6.24 -52.49 -0.33 3.51 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -33.10 380.96 -7.37 -40.47 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.38 Total: 8.12 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.55 Total: -4.29 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.17 Total: -31.59 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.32 Total: -32.66 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.10 -7.37 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733221965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.282 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds