Wall clock time and date at job start Tue Mar 31 2020 19:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99858 * 2 1 4 4 C 1.53007 * 109.47210 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46749 * 64.99707 * 4 3 2 6 6 C 1.46505 * 120.00149 * 270.00002 * 5 4 3 7 7 C 1.50702 * 109.46836 * 270.00364 * 6 5 4 8 8 H 1.07994 * 120.00445 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99368 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00175 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99773 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46664 * 60.00603 * 11 9 7 13 13 H 1.48500 * 109.47160 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47130 * 300.00431 * 11 9 7 15 15 C 1.34777 * 119.99736 * 90.00407 * 5 4 3 16 16 O 1.21282 * 119.99620 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00369 * 359.97438 * 15 5 4 18 18 C 1.52997 * 109.47466 * 180.02562 * 17 15 5 19 19 O 1.42898 * 109.47319 * 180.02562 * 18 17 15 20 20 C 1.35912 * 117.00151 * 180.02562 * 19 18 17 21 21 C 1.38896 * 119.96904 * 359.71802 * 20 19 18 22 22 C 1.38290 * 120.28957 * 179.76866 * 21 20 19 23 23 C 1.37933 * 120.23791 * 0.51098 * 22 21 20 24 24 C 1.39831 * 119.93687 * 359.74749 * 23 22 21 25 25 C 1.47186 * 120.14631 * 180.02562 * 24 23 22 26 26 O 1.21252 * 119.99690 * 179.97438 * 25 24 23 27 27 C 1.38379 * 119.97072 * 180.02562 * 20 19 18 28 28 H 1.09001 * 109.47373 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47479 * 300.00489 * 1 2 3 30 30 H 1.09006 * 109.46787 * 60.00617 * 1 2 3 31 31 H 1.09003 * 109.47687 * 59.99592 * 3 2 1 32 32 H 1.09005 * 109.47292 * 299.99388 * 3 2 1 33 33 H 1.09003 * 109.46871 * 305.00060 * 4 3 2 34 34 H 1.08994 * 109.47270 * 184.99538 * 4 3 2 35 35 H 1.08998 * 109.46420 * 30.00391 * 6 5 4 36 36 H 1.08995 * 109.46904 * 150.00397 * 6 5 4 37 37 H 0.97004 * 119.99914 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.47120 * 59.99760 * 17 15 5 39 39 H 1.08998 * 109.46862 * 300.00562 * 17 15 5 40 40 H 1.09002 * 109.47153 * 59.99773 * 18 17 15 41 41 H 1.09001 * 109.46832 * 299.99964 * 18 17 15 42 42 H 1.07998 * 119.85124 * 0.02562 * 21 20 19 43 43 H 1.08003 * 119.87745 * 180.25834 * 22 21 20 44 44 H 1.07996 * 120.02781 * 179.76315 * 23 22 21 45 45 H 1.08000 * 119.99738 * 359.97438 * 25 24 23 46 46 H 1.08006 * 120.11752 * 359.94747 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3403 7 6 5.5017 -1.2981 -0.9411 8 1 6.2200 -0.5462 -0.6496 9 6 5.8610 -2.6293 -0.9472 10 7 4.9861 -3.5449 -1.3017 11 14 7.5910 -3.1320 -0.4531 12 1 7.8537 -2.6957 0.9418 13 1 7.7223 -4.6084 -0.5436 14 1 8.5721 -2.4913 -1.3653 15 6 4.2633 1.3329 -2.3200 16 8 4.6290 0.8190 -3.3559 17 6 4.1295 2.8311 -2.2283 18 6 4.5119 3.4604 -3.5694 19 8 4.3856 4.8811 -3.4822 20 6 4.6893 5.5972 -4.5968 21 6 5.1064 4.9435 -5.7491 22 6 5.4126 5.6652 -6.8884 23 6 5.3162 7.0411 -6.8858 24 6 4.9024 7.7095 -5.7294 25 6 4.7974 9.1776 -5.7218 26 8 4.4379 9.7544 -4.7177 27 6 4.5889 6.9772 -4.5805 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0901 35 1 3.3857 -1.3631 -0.6713 36 1 3.9139 -1.2123 -2.3644 37 1 5.2388 -4.4815 -1.3055 38 1 4.7909 3.2078 -1.4480 39 1 3.0986 3.0896 -1.9867 40 1 3.8502 3.0836 -4.3494 41 1 5.5428 3.2018 -3.8113 42 1 5.1880 3.8666 -5.7567 43 1 5.7323 5.1498 -7.7820 44 1 5.5598 7.6016 -7.7762 45 1 5.0406 9.7410 -6.6105 46 1 4.2686 7.4867 -3.6836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749305625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:21 Heat of formation + Delta-G solvation = -123.996798 kcal Electronic energy + Delta-G solvation = -28101.143222 eV Core-core repulsion = 23957.019832 eV Total energy + Delta-G solvation = -4144.123390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54133 -39.47674 -39.01066 -37.59172 -37.25790 -34.92855 -32.83927 -32.03264 -31.52531 -30.05348 -29.56441 -27.24539 -25.98971 -25.51958 -24.22071 -22.76115 -22.66655 -22.16145 -20.81191 -18.77005 -18.14746 -16.94050 -16.64765 -16.58526 -16.31055 -16.21712 -16.01787 -15.55138 -15.47947 -15.14436 -14.95492 -14.82028 -14.57744 -14.15353 -14.14070 -14.01608 -13.41898 -13.08863 -12.89511 -12.35130 -12.30641 -12.19695 -11.88424 -11.84939 -11.78305 -11.63258 -11.25435 -11.07914 -10.92957 -10.89362 -10.76574 -10.41247 -10.18596 -10.14173 -9.62384 -9.46267 -9.34424 -9.03816 -8.49985 -8.37970 -7.69543 -5.99506 -4.04023 0.30631 1.12693 2.13376 2.84280 3.27660 3.33721 3.37953 3.41299 3.50806 3.84765 3.99330 4.06114 4.47648 4.48116 4.64956 4.74740 4.82584 4.91265 4.95393 5.02905 5.11367 5.24210 5.31756 5.33408 5.34709 5.44026 5.48220 5.51435 5.56984 5.59938 5.68886 5.74706 5.80187 5.84022 5.91040 6.02320 6.08580 6.19885 6.37231 7.04608 7.16525 7.20394 7.37180 7.51352 7.58586 7.97224 8.28752 8.39147 8.87900 9.04277 9.59858 11.08483 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012021 B = 0.002463 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.634599 B =11365.409340 C =12918.941672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.043 3.957 4 C 0.109 3.891 5 N -0.585 5.585 6 C 0.250 3.750 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.508 3.492 16 O -0.543 6.543 17 C -0.142 4.142 18 C 0.075 3.925 19 O -0.316 6.316 20 C 0.125 3.875 21 C -0.174 4.174 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.160 4.160 25 C 0.385 3.615 26 O -0.458 6.458 27 C -0.097 4.097 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 20.575 -6.279 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.016 4.016 5 N -0.316 5.316 6 C 0.131 3.869 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.294 3.706 16 O -0.421 6.421 17 C -0.182 4.182 18 C 0.000 4.000 19 O -0.230 6.230 20 C 0.079 3.921 21 C -0.193 4.193 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.161 4.161 25 C 0.243 3.757 26 O -0.331 6.331 27 C -0.116 4.116 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.730 20.256 -6.094 21.676 hybrid contribution 0.782 -0.481 0.143 0.929 sum -3.948 19.775 -5.951 21.025 Atomic orbital electron populations 1.22705 0.81977 1.02637 0.99148 1.88103 1.18780 1.26884 1.95143 1.23111 0.95234 0.85498 0.99638 1.21571 0.91293 0.99146 0.89546 1.48164 1.63681 1.09991 1.09718 1.19340 0.96822 0.71788 0.98952 1.21413 0.97440 0.92224 1.45569 0.92693 1.24915 0.97370 0.96413 0.95347 1.69936 1.34364 1.01012 1.47870 0.86594 0.84757 0.77313 0.78928 1.20291 1.21222 1.20288 1.19933 0.78681 0.87555 0.84410 1.90685 1.47065 1.74986 1.29413 1.21600 1.04360 0.94336 0.97928 1.22546 1.02695 0.76265 0.98508 1.86007 1.82993 1.20553 1.33454 1.18898 0.95630 0.91281 0.86275 1.21731 1.02729 1.01550 0.93241 1.20964 0.98410 0.93850 0.97897 1.21253 0.99837 0.94569 0.97310 1.20705 1.04422 0.96446 0.94535 1.24090 0.72196 0.88165 0.91262 1.90538 1.33424 1.72704 1.36423 1.20663 1.00994 0.90722 0.99180 0.89735 0.94631 0.94593 0.92913 0.93720 0.88773 0.89869 0.93486 0.94242 0.92754 0.88229 0.88642 0.90932 0.90743 0.84339 0.84983 0.84958 0.87521 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.24 9.53 -35.23 -0.34 -6.58 16 3 C 0.04 0.59 6.28 37.16 0.23 0.83 16 4 C 0.11 1.70 5.62 -4.04 -0.02 1.68 16 5 N -0.58 -12.06 2.42 -175.05 -0.42 -12.49 16 6 C 0.25 6.55 4.98 -5.19 -0.03 6.52 16 7 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 8 H 0.05 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.51 10.03 7.67 -10.99 -0.08 9.95 16 16 O -0.54 -13.01 15.56 5.56 0.09 -12.92 16 17 C -0.14 -1.98 4.62 -27.89 -0.13 -2.11 16 18 C 0.07 1.02 4.03 37.16 0.15 1.17 16 19 O -0.32 -4.14 10.13 -19.46 -0.20 -4.34 16 20 C 0.12 1.51 6.68 -39.29 -0.26 1.24 16 21 C -0.17 -1.87 9.04 -39.32 -0.36 -2.23 16 22 C -0.09 -0.79 10.02 -39.67 -0.40 -1.18 16 23 C -0.11 -0.81 9.79 -39.10 -0.38 -1.19 16 24 C -0.16 -1.43 5.87 -105.08 -0.62 -2.05 16 25 C 0.38 2.96 11.46 34.36 0.39 3.36 16 26 O -0.46 -5.40 17.16 5.58 0.10 -5.31 16 27 C -0.10 -1.08 9.54 -38.94 -0.37 -1.46 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.58 7.30 -51.93 -0.38 0.20 16 33 H 0.09 1.58 8.07 -51.93 -0.42 1.16 16 34 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 35 H 0.05 1.29 7.11 -51.93 -0.37 0.92 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.10 1.23 7.40 -51.93 -0.38 0.85 16 39 H 0.10 1.14 7.26 -51.93 -0.38 0.76 16 40 H 0.07 0.99 7.62 -51.93 -0.40 0.60 16 41 H 0.07 1.06 7.60 -51.93 -0.39 0.66 16 42 H 0.14 1.49 6.28 -52.49 -0.33 1.16 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.11 0.35 8.06 -52.49 -0.42 -0.08 16 46 H 0.14 1.60 7.65 -52.48 -0.40 1.20 16 LS Contribution 393.41 15.07 5.93 5.93 Total: -1.00 -36.19 393.41 -6.98 -43.17 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.67 Total: -0.79 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.18 Total: 2.44 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.31 Total: -38.51 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.35 Total: -29.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.19 -6.98 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749305625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.823 kcal (2) G-P(sol) polarization free energy of solvation -36.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds